Wall clock time and date at job start Mon Mar 30 2020 01:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.47005 * 111.00207 * 66.04922 * 11 10 9 13 13 C 1.52961 * 108.83251 * 172.42653 * 12 11 10 14 14 C 1.52114 * 110.26236 * 58.73812 * 13 12 11 15 15 H 1.08994 * 109.56110 * 184.85854 * 14 13 12 16 16 C 1.54620 * 110.49706 * 64.85686 * 14 13 12 17 17 S 1.83426 * 102.18765 * 195.40147 * 16 14 13 18 18 O 1.42099 * 109.35780 * 269.69345 * 17 16 14 19 19 O 1.42103 * 109.47694 * 136.51721 * 17 16 14 20 20 C 1.82979 * 97.00918 * 23.08939 * 17 16 14 21 21 C 1.53533 * 111.35435 * 306.20802 * 14 13 12 22 22 H 1.09001 * 110.22471 * 289.74591 * 21 14 13 23 23 C 1.46634 * 111.00193 * 302.51649 * 11 10 9 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08998 * 109.57298 * 292.23239 * 12 11 10 30 30 H 1.08997 * 109.57812 * 52.49182 * 12 11 10 31 31 H 1.08997 * 109.34341 * 178.98349 * 13 12 11 32 32 H 1.08998 * 109.33892 * 298.66275 * 13 12 11 33 33 H 1.08998 * 110.85969 * 313.57898 * 16 14 13 34 34 H 1.09003 * 110.85271 * 77.23326 * 16 14 13 35 35 H 1.09001 * 110.34100 * 243.97103 * 20 17 16 36 36 H 1.09001 * 110.43538 * 121.75358 * 20 17 16 37 37 H 1.09005 * 109.34016 * 306.98664 * 23 11 10 38 38 H 1.09007 * 109.33496 * 66.49010 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7654 -5.1116 -1.2557 13 6 0.1769 -6.5232 -1.2850 14 6 -0.7382 -6.7373 -0.0889 15 1 -1.0827 -7.7712 -0.0734 16 6 -1.9660 -5.8012 -0.1721 17 16 -2.6324 -5.8839 1.5348 18 8 -3.5781 -6.9409 1.6206 19 8 -2.9889 -4.5783 1.9680 20 6 -1.0786 -6.3922 2.3567 21 6 -0.0199 -6.4152 1.2293 22 1 0.7382 -7.1697 1.4394 23 6 0.6105 -5.0218 1.1528 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 -0.0398 -4.3789 -1.3086 30 1 1.4382 -4.9767 -2.1025 31 1 -0.3932 -6.6576 -2.2042 32 1 0.9863 -7.2525 -1.2522 33 1 -1.6627 -4.7845 -0.4216 34 1 -2.6933 -6.1781 -0.8913 35 1 -1.1884 -7.3847 2.7939 36 1 -0.7998 -5.6697 3.1238 37 1 1.1742 -4.8300 2.0659 38 1 -0.1767 -4.2743 1.0539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119323765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:41 Heat of formation + Delta-G solvation = -102.913682 kcal Electronic energy + Delta-G solvation = -20271.480998 eV Core-core repulsion = 17239.466892 eV Total energy + Delta-G solvation = -3032.014105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84899 -38.11422 -37.14354 -36.84727 -34.85108 -33.36376 -31.37086 -29.27417 -27.72459 -26.33230 -24.64472 -23.27656 -21.99709 -19.93386 -19.63407 -18.60171 -17.66458 -17.45751 -16.79543 -16.63475 -16.21998 -16.12165 -15.68031 -15.10160 -14.90746 -14.45301 -14.32827 -14.13227 -13.64212 -13.42486 -13.23548 -13.12236 -13.02261 -12.91461 -12.79001 -12.67839 -12.42808 -12.19208 -11.93130 -11.83597 -11.49633 -11.39036 -11.33726 -11.19091 -10.99518 -10.56430 -9.10499 -8.21864 -6.34467 -0.90249 1.37612 1.38817 1.49996 1.59256 2.38064 2.61020 2.96639 3.10650 3.11021 3.43914 3.58478 3.60847 3.87946 4.03223 4.23046 4.31195 4.36157 4.46913 4.54384 4.62236 4.66144 4.72507 4.86252 4.91870 4.98324 5.02687 5.03914 5.14922 5.24529 5.39056 5.47304 5.57767 5.73847 6.01362 6.25065 6.32927 6.84141 7.35412 8.88566 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.005543 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.435244 B = 5049.834595 C = 5719.442595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.063 0.937 9 C -0.003 4.003 10 C 0.068 3.932 11 N -0.521 5.521 12 C 0.037 3.963 13 C -0.089 4.089 14 C -0.082 4.082 15 H 0.134 0.866 16 C -0.581 4.581 17 S 2.369 3.631 18 O -0.969 6.969 19 O -0.997 6.997 20 C -0.565 4.565 21 C -0.061 4.061 22 H 0.141 0.859 23 C 0.036 3.964 24 H 0.262 0.738 25 H -0.009 1.009 26 H -0.007 1.007 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.016 0.984 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -18.208 0.070 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.041 4.041 10 C -0.060 4.060 11 N -0.243 5.243 12 C -0.091 4.091 13 C -0.128 4.128 14 C -0.101 4.101 15 H 0.152 0.848 16 C -0.712 4.712 17 S 2.560 3.440 18 O -0.966 6.966 19 O -0.994 6.994 20 C -0.698 4.698 21 C -0.081 4.081 22 H 0.159 0.841 23 C -0.093 4.093 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.181 0.819 35 H 0.195 0.805 36 H 0.161 0.839 37 H 0.097 0.903 38 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.521 -18.300 0.498 18.315 hybrid contribution 0.065 2.342 -0.284 2.360 sum -0.457 -15.958 0.214 15.966 Atomic orbital electron populations 1.70111 1.07907 1.27690 1.51615 1.25991 0.95667 1.03462 0.94750 0.85465 0.78724 0.78474 0.78497 1.19724 1.21142 1.18461 1.21629 0.93617 0.92228 1.50510 0.91868 1.19575 0.95297 0.94453 0.94818 1.22120 0.95910 0.86446 1.01535 1.62525 1.26695 1.32712 1.02418 1.22325 0.96554 0.97781 0.92467 1.21230 0.98893 0.95425 0.97243 1.21709 0.92386 1.00294 0.95750 0.84799 1.30653 1.10161 1.09192 1.21238 1.09281 0.79491 0.74057 0.81203 1.93548 1.59986 1.56701 1.86401 1.93583 1.83875 1.40770 1.81182 1.30546 1.15045 1.14884 1.09359 1.21663 0.97269 0.98214 0.90919 0.84140 1.22419 0.95555 0.96165 0.95141 0.92940 0.99082 0.98917 0.91412 0.91550 0.96583 0.90621 0.89127 0.88412 0.86485 0.81941 0.80463 0.83905 0.90281 0.96748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.00 -0.16 4.25 29.85 0.13 -0.03 16 10 C 0.07 2.68 5.30 86.31 0.46 3.14 16 11 N -0.52 -16.37 4.87 -896.44 -4.37 -20.74 16 12 C 0.04 1.05 4.81 86.27 0.41 1.47 16 13 C -0.09 -1.63 5.56 30.29 0.17 -1.46 16 14 C -0.08 -1.37 2.68 -10.36 -0.03 -1.40 16 15 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 16 C -0.58 -12.54 6.03 72.53 0.44 -12.10 16 17 S 2.37 59.81 5.99 -56.49 -0.34 59.47 16 18 O -0.97 -27.63 18.15 -127.47 -2.31 -29.94 16 19 O -1.00 -37.62 18.15 -127.47 -2.31 -39.93 16 20 C -0.57 -9.68 6.68 72.55 0.48 -9.20 16 21 C -0.06 -1.13 3.04 -10.00 -0.03 -1.16 16 22 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 23 C 0.04 1.06 3.51 86.40 0.30 1.36 16 24 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 25 H -0.01 -0.51 6.73 -2.39 -0.02 -0.53 16 26 H -0.01 -0.42 6.51 -2.39 -0.02 -0.44 16 27 H 0.07 2.62 8.05 -2.39 -0.02 2.60 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.02 0.56 5.24 -2.39 -0.01 0.55 16 30 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.12 3.30 5.68 -2.39 -0.01 3.29 16 34 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.18 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.14 2.55 7.83 -2.39 -0.02 2.53 16 37 H 0.08 2.32 8.11 -2.38 -0.02 2.30 16 38 H 0.01 0.52 5.47 -2.38 -0.01 0.51 16 Total: -1.00 -79.52 302.44 -2.95 -82.47 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.04 Total: 9.04 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 3.03 Total: -49.32 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -4.09 Total: -78.42 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -4.63 Total: -69.88 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 59.81 SS G_CDS: -0.34 Total: 59.47 kcal Total: -79.52 -2.95 -82.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119323765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.446 kcal (2) G-P(sol) polarization free energy of solvation -79.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds