Wall clock time and date at job start Mon Mar 30 2020 01:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.46530 * 110.99784 * 66.04379 * 11 10 9 13 13 C 1.53553 * 110.92763 * 176.26933 * 12 11 10 14 14 C 1.52239 * 107.81427 * 57.39283 * 13 12 11 15 15 H 1.08998 * 109.08708 * 58.20375 * 14 13 12 16 16 C 1.53072 * 113.82747 * 179.42507 * 14 13 12 17 17 S 1.83448 * 104.30055 * 151.10140 * 16 14 13 18 18 O 1.42099 * 109.36596 * 242.87630 * 17 16 14 19 19 O 1.42106 * 109.48910 * 109.67364 * 17 16 14 20 20 C 1.83824 * 96.93548 * 356.25962 * 17 16 14 21 21 C 1.54065 * 101.79608 * 336.50494 * 20 17 16 22 22 H 1.09003 * 109.81857 * 285.78001 * 21 20 17 23 23 C 1.47374 * 110.99889 * 299.84088 * 11 10 9 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 26 26 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 27 27 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 28 28 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 29 29 H 1.08999 * 109.18891 * 296.64722 * 12 11 10 30 30 H 1.09005 * 109.18166 * 55.95065 * 12 11 10 31 31 H 1.09007 * 109.78751 * 176.96759 * 13 12 11 32 32 H 1.09000 * 109.79534 * 297.75377 * 13 12 11 33 33 H 1.08996 * 110.46840 * 269.80572 * 16 14 13 34 34 H 1.09004 * 110.46501 * 32.40188 * 16 14 13 35 35 H 1.08999 * 110.96222 * 218.37598 * 20 17 16 36 36 H 1.09003 * 110.96149 * 94.62695 * 20 17 16 37 37 H 1.09004 * 109.76378 * 305.04292 * 23 11 10 38 38 H 1.09001 * 109.77120 * 65.81384 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 0.7677 -5.1110 -1.2505 13 6 0.0755 -6.4811 -1.2883 14 6 -0.8364 -6.5759 -0.0730 15 1 -1.5539 -5.7558 -0.1010 16 6 -1.6108 -7.8932 0.0178 17 16 -1.8699 -8.1435 1.8165 18 8 -1.2045 -9.3298 2.2278 19 8 -3.2439 -7.9581 2.1280 20 6 -0.9134 -6.6799 2.3843 21 6 0.0331 -6.4405 1.1925 22 1 0.8169 -7.1979 1.1851 23 6 0.6535 -5.0497 1.1930 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 0.8902 26 1 0.6248 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8895 28 1 2.8719 -3.6043 0.8905 29 1 0.0151 -4.3269 -1.3338 30 1 1.4578 -5.0357 -2.0910 31 1 -0.5145 -6.5715 -2.2005 32 1 0.8232 -7.2735 -1.2525 33 1 -2.5679 -7.8089 -0.4970 34 1 -1.0229 -8.7105 -0.4000 35 1 -0.3508 -6.9089 3.2893 36 1 -1.5684 -5.8227 2.5404 37 1 1.2538 -4.9143 2.0928 38 1 -0.1325 -4.2955 1.1566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119323766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:43 Heat of formation + Delta-G solvation = -79.097926 kcal Electronic energy + Delta-G solvation = -19763.313245 eV Core-core repulsion = 16732.331868 eV Total energy + Delta-G solvation = -3030.981377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.60408 -37.14294 -36.16143 -35.69838 -32.95889 -32.22115 -30.12121 -28.18839 -26.80379 -24.33342 -22.52467 -22.13574 -20.76093 -19.40997 -18.93288 -16.62415 -16.55766 -16.44504 -15.80458 -15.20376 -14.96168 -14.56957 -14.33514 -14.08081 -13.98915 -13.26391 -12.87573 -12.64226 -12.32545 -12.23070 -12.15322 -12.10034 -12.06620 -11.46827 -11.26531 -11.16824 -11.00719 -10.87877 -10.77680 -10.66532 -10.23645 -10.07504 -9.94231 -9.81113 -9.21063 -8.43946 -7.61119 -6.10114 -4.13061 -0.08669 2.37195 3.24644 3.32775 3.36552 3.46639 3.83649 4.18858 4.28752 4.38107 4.38833 4.61038 4.73226 4.86550 5.13606 5.25846 5.29218 5.33137 5.35127 5.49987 5.60950 5.72729 5.84840 5.92567 5.96967 6.14883 6.18383 6.29488 6.34188 6.57857 6.80553 7.39341 7.42401 7.58784 7.74260 7.90076 8.32520 8.94187 9.51972 11.01010 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.004103 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.059305 B = 6822.710453 C = 7094.378537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C -0.011 4.011 10 C 0.059 3.941 11 N -0.549 5.549 12 C 0.052 3.948 13 C -0.100 4.100 14 C -0.088 4.088 15 H 0.089 0.911 16 C -0.578 4.578 17 S 2.378 3.622 18 O -0.941 6.941 19 O -0.943 6.943 20 C -0.574 4.574 21 C -0.086 4.086 22 H 0.100 0.900 23 C 0.073 3.927 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -15.022 0.129 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.049 4.049 10 C -0.067 4.067 11 N -0.273 5.273 12 C -0.076 4.076 13 C -0.139 4.139 14 C -0.108 4.108 15 H 0.107 0.893 16 C -0.708 4.708 17 S 2.564 3.436 18 O -0.938 6.938 19 O -0.940 6.940 20 C -0.705 4.705 21 C -0.106 4.106 22 H 0.118 0.882 23 C -0.056 4.056 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.519 -16.014 0.666 16.225 hybrid contribution 0.171 2.329 -0.496 2.387 sum -2.349 -13.686 0.170 13.887 Atomic orbital electron populations 1.69963 1.06118 1.26612 1.50759 1.25021 0.94829 0.99350 0.95135 0.86536 0.80166 0.83695 0.77626 1.19654 1.20998 1.20986 1.21190 0.93091 0.90875 1.50752 0.92505 1.19680 0.95023 0.92871 0.97300 1.22304 0.96750 0.86372 1.01290 1.61869 1.28206 1.36150 1.01100 1.22049 0.97248 0.95435 0.92889 1.21509 0.97646 0.98621 0.96113 1.21444 0.97228 0.94739 0.97343 0.89279 1.30321 1.09870 1.06636 1.23974 1.09394 0.76203 0.78011 0.80036 1.93606 1.76365 1.43463 1.80380 1.93606 1.31120 1.86737 1.82561 1.30480 1.12771 1.19803 1.07397 1.21762 0.96919 1.02048 0.89871 0.88151 1.21843 0.96392 0.93002 0.94394 0.93006 0.96349 0.96489 0.91863 0.91793 0.93733 0.90757 0.90972 0.90793 0.84560 0.84548 0.84326 0.84255 0.90191 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C -0.01 -0.26 4.34 -27.88 -0.12 -0.38 16 10 C 0.06 1.15 5.27 -3.82 -0.02 1.13 16 11 N -0.55 -8.78 4.76 -234.62 -1.12 -9.90 16 12 C 0.05 0.76 5.10 -3.74 -0.02 0.74 16 13 C -0.10 -1.09 5.64 -26.83 -0.15 -1.24 16 14 C -0.09 -0.90 2.08 -90.38 -0.19 -1.09 16 15 H 0.09 0.96 8.13 -51.93 -0.42 0.53 16 16 C -0.58 -4.66 6.86 37.19 0.26 -4.41 16 17 S 2.38 23.61 6.11 -107.50 -0.66 22.95 16 18 O -0.94 -12.27 18.15 -57.72 -1.05 -13.32 16 19 O -0.94 -12.70 18.15 -57.72 -1.05 -13.74 16 20 C -0.57 -5.30 6.81 37.71 0.26 -5.04 16 21 C -0.09 -0.95 2.32 -89.83 -0.21 -1.15 16 22 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 23 C 0.07 1.06 4.47 -3.93 -0.02 1.04 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.47 6.54 -51.93 -0.34 0.13 16 26 H 0.02 0.44 6.62 -51.93 -0.34 0.09 16 27 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.75 6.60 -51.93 -0.34 0.41 16 30 H 0.07 1.06 8.08 -51.93 -0.42 0.65 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.14 0.91 8.05 -51.93 -0.42 0.49 16 35 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -34.07 308.73 -10.10 -44.17 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.97 Total: -2.18 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -0.62 Total: -23.33 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.38 Total: -35.28 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -2.10 Total: -27.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 23.61 SS G_CDS: -0.66 Total: 22.95 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.07 -10.10 -44.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119323766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.927 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds