Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00055 * 2 1 4 4 H 1.48500 * 109.47675 * 270.00450 * 3 2 1 5 5 H 1.48500 * 109.47272 * 30.00591 * 3 2 1 6 6 H 1.48503 * 109.47140 * 150.00458 * 3 2 1 7 7 C 1.37877 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99705 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46798 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46908 * 179.97438 * 10 9 7 12 12 C 1.46485 * 111.00166 * 66.04306 * 11 10 9 13 13 C 1.52947 * 108.74392 * 173.12113 * 12 11 10 14 14 C 1.53153 * 109.26821 * 63.80330 * 13 12 11 15 15 H 1.09001 * 109.09671 * 66.53717 * 14 13 12 16 16 C 1.54457 * 107.68186 * 184.82501 * 14 13 12 17 17 S 1.83270 * 105.33787 * 116.58733 * 16 14 13 18 18 O 1.42098 * 109.60406 * 94.40461 * 17 16 14 19 19 O 1.42099 * 109.60640 * 228.33410 * 17 16 14 20 20 C 1.84072 * 95.38430 * 341.36736 * 17 16 14 21 21 C 1.51874 * 111.09701 * 306.96529 * 14 13 12 22 22 H 1.09004 * 106.67495 * 159.66172 * 21 14 13 23 23 C 1.45391 * 111.00048 * 299.78834 * 11 10 9 24 24 H 0.97005 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47597 * 59.99989 * 9 7 2 26 26 H 1.09003 * 109.47249 * 299.99334 * 9 7 2 27 27 H 1.08997 * 109.47133 * 59.99610 * 10 9 7 28 28 H 1.08999 * 109.46739 * 299.99141 * 10 9 7 29 29 H 1.09004 * 109.59371 * 53.34309 * 12 11 10 30 30 H 1.09002 * 109.59727 * 292.89550 * 12 11 10 31 31 H 1.08997 * 109.50633 * 303.86240 * 13 12 11 32 32 H 1.09010 * 109.53897 * 183.75871 * 13 12 11 33 33 H 1.09000 * 110.27426 * 357.62162 * 16 14 13 34 34 H 1.09003 * 110.27108 * 235.55271 * 16 14 13 35 35 H 1.08996 * 111.22721 * 153.65277 * 20 17 16 36 36 H 1.08999 * 111.22265 * 278.07875 * 20 17 16 37 37 H 1.08996 * 108.37573 * 295.47369 * 23 11 10 38 38 H 1.08997 * 108.37326 * 52.60854 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 0.0001 12 6 0.7668 -5.1116 -1.2493 13 6 0.1647 -6.5174 -1.2675 14 6 -0.8494 -6.6477 -0.1272 15 1 -1.6954 -5.9896 -0.3254 16 6 -1.3423 -8.1113 -0.1026 17 16 -0.7981 -8.7790 1.5150 18 8 -1.8484 -8.6471 2.4630 19 8 -0.1622 -10.0352 1.3228 20 6 0.4736 -7.4831 1.8178 21 6 -0.2311 -6.2509 1.2021 22 1 -1.0570 -6.0138 1.8728 23 6 0.6665 -5.0480 1.1784 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8898 27 1 2.8719 -3.6043 0.8894 28 1 2.8717 -3.6044 -0.8906 29 1 1.4419 -4.9922 -2.0968 30 1 -0.0312 -4.3715 -1.3079 31 1 0.9569 -7.2544 -1.1361 32 1 -0.3360 -6.6873 -2.2208 33 1 -0.8882 -8.6765 -0.9165 34 1 -2.4291 -8.1450 -0.1787 35 1 0.6500 -7.3448 2.8845 36 1 1.4014 -7.7104 1.2927 37 1 1.3082 -5.0806 2.0589 38 1 0.0457 -4.1545 1.2438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119323767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -74.623656 kcal Electronic energy + Delta-G solvation = -19822.913713 eV Core-core repulsion = 16792.126355 eV Total energy + Delta-G solvation = -3030.787358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.65563 -37.17552 -36.15021 -35.74721 -32.93420 -32.29401 -30.08393 -28.13351 -26.87432 -24.38007 -22.97980 -22.61315 -20.56589 -18.98623 -18.56801 -16.72323 -16.67679 -16.33841 -16.00506 -15.15951 -14.80483 -14.61332 -14.50969 -14.19263 -13.71805 -13.45033 -12.93917 -12.55141 -12.37472 -12.27049 -12.18816 -12.14288 -11.83213 -11.52655 -11.45577 -11.19136 -10.97985 -10.79544 -10.66650 -10.46729 -10.41456 -10.01315 -9.90369 -9.76977 -9.21139 -8.42507 -7.52890 -6.09314 -4.12270 -0.05931 2.35485 3.26062 3.32936 3.35960 3.44102 3.82288 4.18756 4.31371 4.39947 4.46252 4.56421 4.60864 4.86243 5.09856 5.26507 5.30700 5.33495 5.43681 5.56345 5.64759 5.73209 5.86808 5.93930 6.01181 6.13911 6.20561 6.33340 6.36571 6.59055 6.81771 7.42359 7.48293 7.61173 7.78992 7.91180 8.33360 8.94730 9.52580 11.01768 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.042170 B = 0.003955 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.813230 B = 7077.791874 C = 7174.674829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.056 0.944 9 C -0.011 4.011 10 C 0.060 3.940 11 N -0.547 5.547 12 C 0.054 3.946 13 C -0.112 4.112 14 C -0.073 4.073 15 H 0.094 0.906 16 C -0.581 4.581 17 S 2.372 3.628 18 O -0.938 6.938 19 O -0.945 6.945 20 C -0.562 4.562 21 C -0.080 4.080 22 H 0.083 0.917 23 C 0.071 3.929 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -15.417 -0.325 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.049 4.049 10 C -0.066 4.066 11 N -0.271 5.271 12 C -0.074 4.074 13 C -0.150 4.150 14 C -0.093 4.093 15 H 0.113 0.887 16 C -0.711 4.711 17 S 2.557 3.443 18 O -0.936 6.936 19 O -0.942 6.942 20 C -0.693 4.693 21 C -0.100 4.100 22 H 0.102 0.898 23 C -0.058 4.058 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.095 0.905 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.906 -16.519 0.263 16.631 hybrid contribution -0.017 2.378 -0.518 2.434 sum -1.923 -14.141 -0.255 14.273 Atomic orbital electron populations 1.69953 1.06116 1.26710 1.50661 1.25014 0.94830 0.99334 0.95136 0.86588 0.79880 0.83368 0.78144 1.20642 1.21219 1.19803 1.21145 0.93047 0.90881 1.50878 0.92567 1.19676 0.95080 0.92846 0.97316 1.22294 0.96756 0.86298 1.01273 1.61237 1.28583 1.36115 1.01137 1.21938 0.97346 0.95153 0.92977 1.21789 0.97644 0.98598 0.96994 1.21055 0.99607 0.92505 0.96116 0.88721 1.30597 1.11534 1.06839 1.22096 1.09505 0.78452 0.77387 0.78954 1.93625 1.53992 1.87421 1.58514 1.93595 1.75840 1.38832 1.85938 1.30600 1.15407 1.13352 1.09914 1.20846 0.98231 0.95042 0.95898 0.89827 1.20927 0.95228 0.95004 0.94643 0.92960 0.96456 0.96230 0.91895 0.91775 0.90678 0.93747 0.90914 0.91143 0.84374 0.84864 0.84633 0.83917 0.90519 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C -0.01 -0.27 4.34 -27.88 -0.12 -0.39 16 10 C 0.06 1.17 5.26 -3.82 -0.02 1.15 16 11 N -0.55 -8.71 4.80 -238.10 -1.14 -9.85 16 12 C 0.05 0.79 5.04 -4.08 -0.02 0.77 16 13 C -0.11 -1.22 4.99 -26.68 -0.13 -1.35 16 14 C -0.07 -0.75 2.72 -90.35 -0.25 -0.99 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.58 -4.64 6.94 37.92 0.26 -4.37 16 17 S 2.37 23.55 6.03 -107.50 -0.65 22.90 16 18 O -0.94 -12.49 18.16 -57.67 -1.05 -13.54 16 19 O -0.95 -12.35 18.16 -57.67 -1.05 -13.40 16 20 C -0.56 -5.25 6.75 38.07 0.26 -5.00 16 21 C -0.08 -0.91 2.17 -91.72 -0.20 -1.10 16 22 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 23 C 0.07 1.05 4.81 -6.07 -0.03 1.02 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.02 0.44 6.71 -51.93 -0.35 0.10 16 26 H 0.02 0.50 6.24 -51.93 -0.32 0.18 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 30 H 0.04 0.74 6.82 -51.93 -0.35 0.39 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.14 0.90 7.58 -51.93 -0.39 0.51 16 34 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.14 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 38 H 0.05 0.93 5.82 -51.93 -0.30 0.62 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -33.90 307.20 -10.09 -43.99 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.89 Total: -2.23 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -0.66 Total: -23.21 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.41 Total: -35.23 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -2.09 Total: -26.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 23.55 SS G_CDS: -0.65 Total: 22.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.90 -10.09 -43.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119323767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.635 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds