Wall clock time and date at job start Mon Mar 30 2020 01:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 C 1.53003 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47017 * 179.97438 * 16 15 14 18 18 H 1.08998 * 110.45446 * 52.40205 * 17 16 15 19 19 C 1.54514 * 110.50809 * 175.00086 * 17 16 15 20 20 C 1.54477 * 104.06390 * 118.64666 * 19 17 16 21 21 O 1.44429 * 104.80218 * 23.97515 * 20 19 17 22 22 C 1.44427 * 105.27768 * 319.49315 * 21 20 19 23 23 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 25 25 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 30 30 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 31 31 H 1.08990 * 109.47021 * 299.99845 * 16 15 14 32 32 H 1.09002 * 109.46620 * 60.00037 * 16 15 14 33 33 H 1.09003 * 110.50681 * 237.29172 * 19 17 16 34 34 H 1.08995 * 110.51162 * 0.02562 * 19 17 16 35 35 H 1.09000 * 110.37210 * 142.80373 * 20 19 17 36 36 H 1.09002 * 110.37209 * 265.04076 * 20 19 17 37 37 H 1.09003 * 110.36641 * 281.67599 * 22 21 20 38 38 H 1.09000 * 110.37465 * 159.34432 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 6 2.9662 -10.1313 -0.0138 17 6 4.1383 -11.1147 -0.0194 18 1 4.8317 -10.8855 0.7897 19 6 3.6265 -12.5676 0.1015 20 6 4.1033 -13.2433 -1.2033 21 8 5.2361 -12.4573 -1.6333 22 6 4.8637 -11.0845 -1.3829 23 1 -0.4849 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8894 26 1 3.8011 -6.1834 0.0015 27 1 1.7226 -7.8789 0.8860 28 1 1.7214 -7.8714 -0.8939 29 1 4.1107 -8.5346 -0.8984 30 1 4.1120 -8.5422 0.8815 31 1 2.3585 -10.2949 0.8761 32 1 2.3567 -10.2879 -0.9039 33 1 4.0689 -13.0574 0.9690 34 1 2.5386 -12.5853 0.1647 35 1 4.4072 -14.2719 -1.0088 36 1 3.3140 -13.2170 -1.9546 37 1 4.1918 -10.7254 -2.1624 38 1 5.7516 -10.4547 -1.3265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128943628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:42 Heat of formation + Delta-G solvation = -106.881413 kcal Electronic energy + Delta-G solvation = -17894.367372 eV Core-core repulsion = 14862.181213 eV Total energy + Delta-G solvation = -3032.186159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.93068 -39.12412 -36.07669 -33.95467 -32.42882 -31.44717 -29.80267 -28.56603 -25.65202 -25.26344 -23.35447 -21.77637 -20.82037 -20.17121 -17.82941 -16.85995 -16.33744 -16.19324 -16.13209 -15.57136 -15.41528 -14.80469 -14.65502 -14.05079 -13.84514 -13.34540 -13.14561 -13.05903 -12.77108 -12.54877 -12.08662 -11.87914 -11.78751 -11.36063 -11.23279 -11.06337 -11.02645 -10.97542 -10.83789 -10.74944 -10.17311 -9.81579 -9.39622 -9.07117 -8.88046 -8.23638 -6.50126 -6.21715 -3.92300 3.03867 3.10660 3.22302 3.27945 3.32195 3.57602 3.72533 4.13462 4.20420 4.27809 4.43729 4.64125 4.71353 4.83649 4.87820 4.99305 5.12718 5.13364 5.25962 5.28211 5.30322 5.37502 5.46110 5.49223 5.52557 5.60609 5.66690 5.80778 5.87857 5.94967 5.99545 6.14045 6.39853 6.62700 7.59502 7.71501 8.35191 8.62084 9.23535 10.85738 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.058297 B = 0.002403 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.180151 B =11651.557824 C =11953.738048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.120 3.880 15 C -0.132 4.132 16 C -0.108 4.108 17 C -0.122 4.122 18 H 0.085 0.915 19 C -0.153 4.153 20 C 0.043 3.957 21 O -0.379 6.379 22 C 0.047 3.953 23 H 0.268 0.732 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.398 0.602 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.185 -23.481 -0.217 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.395 5.395 14 C -0.004 4.004 15 C -0.170 4.170 16 C -0.146 4.146 17 C -0.140 4.140 18 H 0.103 0.897 19 C -0.191 4.191 20 C -0.034 4.034 21 O -0.298 6.298 22 C -0.030 4.030 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.231 0.769 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.201 -23.790 -0.303 25.166 hybrid contribution 2.222 1.433 0.116 2.647 sum 10.423 -22.357 -0.187 24.668 Atomic orbital electron populations 1.70020 1.05951 1.27451 1.46871 1.25003 0.95044 0.99056 0.94554 0.86158 0.79392 0.81533 0.78344 1.20271 1.20754 1.19702 1.22868 0.94905 0.91647 1.58925 0.90924 1.85399 1.05005 0.96351 1.96716 1.23531 1.06535 0.95428 1.04908 1.20321 0.86543 0.86336 0.75152 1.90701 1.15401 1.85652 1.47524 1.46013 1.09912 1.05608 1.77956 1.21269 0.96069 0.80692 1.02338 1.21835 0.98081 0.94210 1.02904 1.21575 0.96946 0.93035 1.03069 1.22577 0.97836 0.94916 0.98711 0.89699 1.23030 1.01975 0.95269 0.98813 1.23419 0.89045 0.96128 0.94782 1.89129 1.38168 1.17218 1.85238 1.23578 0.99841 0.84185 0.95370 0.92186 0.89237 0.89232 0.76864 0.91695 0.91721 0.91195 0.91108 0.90987 0.91216 0.90637 0.90156 0.89243 0.92233 0.91902 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.94 7.85 -10.98 -0.09 9.85 16 12 O -0.52 -11.89 15.86 5.55 0.09 -11.81 16 13 N -0.74 -9.71 5.56 -60.30 -0.33 -10.05 16 14 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 15 C -0.13 -0.95 5.21 -26.73 -0.14 -1.09 16 16 C -0.11 -0.69 4.43 -26.73 -0.12 -0.81 16 17 C -0.12 -0.76 3.11 -89.05 -0.28 -1.03 16 18 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.15 -0.88 6.74 -25.16 -0.17 -1.05 16 20 C 0.04 0.29 7.63 37.93 0.29 0.57 16 21 O -0.38 -3.55 11.65 -35.23 -0.41 -3.96 16 22 C 0.05 0.34 6.51 37.93 0.25 0.59 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 25 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 26 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.46 7.63 -51.93 -0.40 0.07 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.40 7.73 -51.93 -0.40 0.00 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.44 7.74 -51.93 -0.40 0.04 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -34.87 331.26 -8.18 -43.05 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.15 Total: -1.70 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 0.14 Total: -7.55 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.40 Total: -35.55 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.32 Total: -15.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.87 -8.18 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128943628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.831 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds