Wall clock time and date at job start Mon Mar 30 2020 01:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 C 1.53003 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47017 * 179.97438 * 16 15 14 18 18 H 1.08998 * 110.45446 * 52.40205 * 17 16 15 19 19 C 1.54514 * 110.50809 * 175.00086 * 17 16 15 20 20 C 1.54477 * 104.06390 * 118.64666 * 19 17 16 21 21 O 1.44429 * 104.80218 * 23.97515 * 20 19 17 22 22 C 1.44427 * 105.27768 * 319.49315 * 21 20 19 23 23 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 25 25 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 30 30 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 31 31 H 1.08990 * 109.47021 * 299.99845 * 16 15 14 32 32 H 1.09002 * 109.46620 * 60.00037 * 16 15 14 33 33 H 1.09003 * 110.50681 * 237.29172 * 19 17 16 34 34 H 1.08995 * 110.51162 * 0.02562 * 19 17 16 35 35 H 1.09000 * 110.37210 * 142.80373 * 20 19 17 36 36 H 1.09002 * 110.37209 * 265.04076 * 20 19 17 37 37 H 1.09003 * 110.36641 * 281.67599 * 22 21 20 38 38 H 1.09000 * 110.37465 * 159.34432 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 6 2.9662 -10.1313 -0.0138 17 6 4.1383 -11.1147 -0.0194 18 1 4.8317 -10.8855 0.7897 19 6 3.6265 -12.5676 0.1015 20 6 4.1033 -13.2433 -1.2033 21 8 5.2361 -12.4573 -1.6333 22 6 4.8637 -11.0845 -1.3829 23 1 -0.4849 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8894 26 1 3.8011 -6.1834 0.0015 27 1 1.7226 -7.8789 0.8860 28 1 1.7214 -7.8714 -0.8939 29 1 4.1107 -8.5346 -0.8984 30 1 4.1120 -8.5422 0.8815 31 1 2.3585 -10.2949 0.8761 32 1 2.3567 -10.2879 -0.9039 33 1 4.0689 -13.0574 0.9690 34 1 2.5386 -12.5853 0.1647 35 1 4.4072 -14.2719 -1.0088 36 1 3.3140 -13.2170 -1.9546 37 1 4.1918 -10.7254 -2.1624 38 1 5.7516 -10.4547 -1.3265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128943628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:41 Heat of formation + Delta-G solvation = -131.709233 kcal Electronic energy + Delta-G solvation = -17895.443987 eV Core-core repulsion = 14862.181213 eV Total energy + Delta-G solvation = -3033.262774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67816 -40.34117 -36.97999 -34.91876 -34.58203 -32.32068 -30.85132 -29.49194 -27.68538 -26.19117 -23.94113 -22.47440 -21.83202 -21.06401 -19.81483 -17.79460 -17.36467 -17.25754 -16.93848 -16.87836 -16.48401 -16.33079 -15.75115 -15.58884 -14.76640 -14.64454 -14.40068 -13.90302 -13.75291 -13.54941 -13.22668 -13.16632 -12.88868 -12.61987 -12.61695 -12.36441 -12.05508 -11.80840 -11.69704 -11.50563 -11.34345 -11.14262 -10.92324 -10.73712 -10.27792 -10.10517 -8.67153 -8.34689 -6.12985 1.27470 1.42821 1.47654 1.58120 1.61630 2.26596 2.32034 2.99383 3.08189 3.32415 3.63181 3.74086 3.88491 3.98700 4.09632 4.17612 4.27779 4.31555 4.33374 4.45781 4.51410 4.63168 4.71720 4.73359 4.86816 4.88981 4.93580 4.98484 5.10864 5.17167 5.31933 5.39824 5.41908 5.48191 5.88403 6.19903 6.52609 7.06522 7.25862 8.74573 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.058297 B = 0.002403 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.180151 B =11651.557824 C =11953.738048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.713 5.713 14 C 0.118 3.882 15 C -0.120 4.120 16 C -0.104 4.104 17 C -0.116 4.116 18 H 0.089 0.911 19 C -0.152 4.152 20 C 0.036 3.964 21 O -0.406 6.406 22 C 0.042 3.958 23 H 0.271 0.729 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.417 0.583 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 -23.879 0.034 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.281 4.281 11 C 0.316 3.684 12 O -0.447 6.447 13 N -0.367 5.367 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.142 4.142 17 C -0.135 4.135 18 H 0.108 0.892 19 C -0.189 4.189 20 C -0.040 4.040 21 O -0.326 6.326 22 C -0.035 4.035 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.254 0.746 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.623 -24.231 -0.051 26.457 hybrid contribution 1.527 1.403 0.026 2.073 sum 12.150 -22.828 -0.026 25.860 Atomic orbital electron populations 1.70186 1.07990 1.28613 1.48018 1.26156 0.95995 1.03396 0.93761 0.84934 0.78189 0.75932 0.78796 1.19302 1.20332 1.18142 1.23205 0.95356 0.91942 1.58835 0.89845 1.85590 1.10760 0.99363 1.97058 1.23377 1.03472 0.94360 1.06848 1.20104 0.86273 0.86821 0.75162 1.90689 1.17534 1.86184 1.50313 1.45784 1.10320 1.05293 1.75350 1.21443 0.97652 0.79983 1.01469 1.21766 0.96537 0.93377 1.04099 1.21529 0.97037 0.92430 1.03188 1.22519 0.97603 0.95069 0.98277 0.89217 1.23037 1.02498 0.94872 0.98514 1.23582 0.88608 0.96488 0.95322 1.89097 1.39487 1.18353 1.85650 1.23696 1.00286 0.83558 0.95921 0.91997 0.87154 0.87146 0.74598 0.92599 0.92727 0.90070 0.89812 0.90732 0.91359 0.90103 0.89372 0.88366 0.91871 0.91874 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 2 C 0.01 0.66 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.55 -31.15 9.50 67.96 0.65 -30.50 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.45 7.85 87.66 0.69 20.14 16 12 O -0.57 -26.51 15.86 -3.04 -0.05 -26.56 16 13 N -0.71 -17.18 5.56 -463.07 -2.57 -19.76 16 14 C 0.12 2.41 5.67 86.38 0.49 2.90 16 15 C -0.12 -1.40 5.21 30.59 0.16 -1.24 16 16 C -0.10 -1.09 4.43 30.60 0.14 -0.95 16 17 C -0.12 -1.18 3.11 -9.78 -0.03 -1.21 16 18 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 19 C -0.15 -1.46 6.74 31.61 0.21 -1.24 16 20 C 0.04 0.43 7.63 72.48 0.55 0.99 16 21 O -0.41 -7.15 11.65 -148.98 -1.74 -8.89 16 22 C 0.04 0.53 6.51 72.48 0.47 1.00 16 23 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 24 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 25 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 26 H 0.42 6.95 8.47 -92.71 -0.79 6.17 16 27 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 0.81 7.63 -2.38 -0.02 0.79 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.76 7.96 -2.39 -0.02 0.74 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.71 7.73 -2.39 -0.02 0.69 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.78 7.74 -2.39 -0.02 0.76 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.44 331.26 1.28 -76.16 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.25 Total: 12.80 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.23 Total: -13.63 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -2.29 Total: -75.62 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.78 Total: -35.45 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -77.44 1.28 -76.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128943628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.551 kcal (2) G-P(sol) polarization free energy of solvation -77.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds