Wall clock time and date at job start Mon Mar 30 2020 01:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47137 * 269.99813 * 3 2 1 5 5 H 1.48498 * 109.47312 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.47136 * 149.99978 * 3 2 1 7 7 C 1.37882 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99959 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00117 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47313 * 180.02562 * 9 7 2 11 11 O 1.21273 * 120.00121 * 359.97438 * 10 9 7 12 12 N 1.34788 * 120.00063 * 180.02562 * 10 9 7 13 13 C 1.39308 * 119.99696 * 174.58641 * 12 10 9 14 14 C 1.39217 * 119.90206 * 326.31918 * 13 12 10 15 15 C 1.37088 * 120.10113 * 179.72225 * 14 13 12 16 16 C 1.40051 * 119.89537 * 0.57882 * 15 14 13 17 17 C 1.46849 * 120.09766 * 179.72121 * 16 15 14 18 18 O 1.21299 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.50705 * 120.00263 * 359.97438 * 17 16 15 20 20 C 1.52991 * 117.50056 * 223.74940 * 19 17 16 21 21 C 1.52995 * 117.50163 * 155.08595 * 19 17 16 22 22 C 1.40057 * 119.80275 * 359.69632 * 16 15 14 23 23 C 1.37083 * 119.89774 * 0.02562 * 22 16 15 24 24 H 0.96996 * 119.99913 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47246 * 60.00090 * 9 7 2 26 26 H 1.09010 * 109.47526 * 300.00344 * 9 7 2 27 27 H 0.97001 * 119.99776 * 354.85930 * 12 10 9 28 28 H 1.08002 * 119.94694 * 0.02562 * 14 13 12 29 29 H 1.07996 * 120.04940 * 180.29891 * 15 14 13 30 30 H 1.09005 * 115.54345 * 9.41861 * 19 17 16 31 31 H 1.09002 * 117.49908 * 359.97438 * 20 19 17 32 32 H 1.08996 * 117.50081 * 145.01834 * 20 19 17 33 33 H 1.08999 * 117.49716 * 214.98203 * 21 19 17 34 34 H 1.08998 * 117.49882 * 359.97438 * 21 19 17 35 35 H 1.07998 * 120.04891 * 180.02562 * 22 16 15 36 36 H 1.07999 * 119.94964 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 8 3.2258 -3.5367 0.0011 12 7 5.3390 -2.8612 0.0001 13 6 5.8042 -4.1694 0.1141 14 6 5.1011 -5.0914 0.8845 15 6 5.5522 -6.3813 0.9948 16 6 6.7288 -6.7676 0.3409 17 6 7.2193 -8.1466 0.4610 18 8 8.2384 -8.4794 -0.1065 19 6 6.4566 -9.1482 1.2894 20 6 7.2640 -10.0607 2.2147 21 6 6.6286 -10.6285 0.9431 22 6 7.4360 -5.8351 -0.4284 23 6 6.9744 -4.5490 -0.5377 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8894 26 1 3.8746 -0.6808 -0.8905 27 1 5.9687 -2.1273 -0.0752 28 1 4.1962 -4.7914 1.3920 29 1 5.0034 -7.0971 1.5888 30 1 5.4752 -8.8227 1.6344 31 1 8.3470 -9.9368 2.2240 32 1 6.8138 -10.3359 3.1683 33 1 5.7605 -11.2770 1.0608 34 1 7.2931 -10.8779 0.1159 35 1 8.3436 -6.1288 -0.9347 36 1 7.5193 -3.8291 -1.1304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:44 Heat of formation + Delta-G solvation = -42.386822 kcal Electronic energy + Delta-G solvation = -19473.138110 eV Core-core repulsion = 16308.304695 eV Total energy + Delta-G solvation = -3164.833415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69905 -40.87777 -39.11529 -37.03565 -35.82429 -35.05114 -32.29505 -32.18543 -30.75495 -26.86612 -25.29396 -23.95870 -23.35379 -23.25136 -21.27588 -20.44350 -19.15082 -18.94213 -18.19222 -17.58543 -16.89489 -16.33765 -16.24106 -15.95010 -15.54416 -15.29782 -15.26133 -14.94723 -14.44757 -14.24209 -13.90625 -13.76790 -13.55108 -13.38081 -12.82821 -12.45431 -12.42426 -12.29230 -11.87758 -11.56055 -11.55394 -11.47174 -11.40289 -10.83235 -10.78497 -10.65059 -10.07194 -9.20213 -8.26894 -6.36312 -0.46311 0.38619 1.15856 1.41124 1.44779 1.54714 1.75698 2.10578 2.38192 2.70077 2.90770 3.02848 3.07038 3.67686 3.83426 3.89822 4.01348 4.04317 4.13770 4.20038 4.30855 4.46758 4.55142 4.67923 4.71720 4.88768 4.96795 5.01295 5.06959 5.13577 5.19327 5.25378 5.33203 5.42706 5.46157 5.90029 6.20264 6.49769 6.51782 6.80124 7.19487 7.31647 8.90447 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041452 B = 0.003223 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.321706 B = 8684.431519 C = 9170.062940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.226 1.226 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.026 4.026 10 C 0.522 3.478 11 O -0.553 6.553 12 N -0.668 5.668 13 C 0.180 3.820 14 C -0.163 4.163 15 C -0.040 4.040 16 C -0.205 4.205 17 C 0.431 3.569 18 O -0.495 6.495 19 C -0.234 4.234 20 C -0.139 4.139 21 C -0.150 4.150 22 C -0.042 4.042 23 C -0.157 4.157 24 H 0.268 0.732 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.430 0.570 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.191 -12.614 3.505 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.148 1.148 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.066 4.066 10 C 0.313 3.687 11 O -0.428 6.428 12 N -0.314 5.314 13 C 0.083 3.917 14 C -0.184 4.184 15 C -0.058 4.058 16 C -0.207 4.207 17 C 0.313 3.687 18 O -0.374 6.374 19 C -0.253 4.253 20 C -0.176 4.176 21 C -0.187 4.187 22 C -0.061 4.061 23 C -0.178 4.178 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.270 0.730 28 H 0.135 0.865 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.950 -13.255 3.224 23.349 hybrid contribution -0.426 1.164 -0.139 1.247 sum 18.525 -12.091 3.084 22.335 Atomic orbital electron populations 1.70087 1.08859 1.28470 1.51876 1.26127 0.95753 1.03904 0.93645 0.85555 0.79944 0.76850 0.79572 1.18747 1.21459 1.14831 1.21147 0.90840 0.93817 1.51659 0.95044 1.19644 0.95913 0.89810 1.01222 1.21485 0.81045 0.93114 0.73064 1.90610 1.56451 1.47743 1.48031 1.43637 1.07762 1.07415 1.72617 1.18379 0.94294 0.85495 0.93504 1.21088 1.01625 0.94769 1.00894 1.21360 0.93574 0.95142 0.95737 1.20410 0.98948 0.95894 1.05439 1.21717 0.82814 0.87526 0.76601 1.90482 1.24422 1.81129 1.41360 1.22832 1.03421 0.92847 1.06188 1.23059 0.99371 0.99528 0.95619 1.23063 1.04035 0.91953 0.99600 1.21242 0.98600 0.91785 0.94451 1.20980 0.97253 0.97666 1.01853 0.92293 0.90403 0.90664 0.73033 0.86504 0.82693 0.83986 0.88933 0.85314 0.85660 0.89084 0.83657 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 2 C 0.00 0.13 5.47 84.66 0.46 0.60 16 3 Si 0.96 40.28 27.47 68.60 1.88 42.16 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.23 -7.97 6.54 99.48 0.65 -7.32 16 7 C -0.54 -30.89 9.48 25.60 0.24 -30.65 16 8 H 0.03 2.14 7.00 -2.91 -0.02 2.12 16 9 C -0.03 -1.11 4.53 29.10 0.13 -0.98 16 10 C 0.52 21.15 7.55 87.65 0.66 21.81 16 11 O -0.55 -27.63 13.15 -3.01 -0.04 -27.67 16 12 N -0.67 -19.22 5.31 -303.46 -1.61 -20.83 16 13 C 0.18 5.10 6.27 38.42 0.24 5.35 16 14 C -0.16 -5.01 8.60 22.23 0.19 -4.81 16 15 C -0.04 -0.98 9.43 22.44 0.21 -0.76 16 16 C -0.21 -4.96 5.87 -20.14 -0.12 -5.08 16 17 C 0.43 10.06 6.87 27.94 0.19 10.25 16 18 O -0.49 -13.88 16.41 -3.09 -0.05 -13.93 16 19 C -0.23 -4.00 5.76 -11.54 -0.07 -4.06 16 20 C -0.14 -1.89 10.15 30.61 0.31 -1.58 16 21 C -0.15 -2.18 10.05 30.62 0.31 -1.87 16 22 C -0.04 -0.97 9.57 22.44 0.21 -0.75 16 23 C -0.16 -3.52 9.92 22.23 0.22 -3.30 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.08 2.93 7.20 -2.39 -0.02 2.91 16 26 H 0.08 2.79 7.57 -2.38 -0.02 2.77 16 27 H 0.43 8.54 8.81 -92.71 -0.82 7.73 16 28 H 0.12 4.23 6.42 -2.91 -0.02 4.22 16 29 H 0.16 2.93 6.11 -2.91 -0.02 2.91 16 30 H 0.14 1.95 6.18 -2.38 -0.01 1.94 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.13 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.57 7.89 -2.39 -0.02 1.55 16 35 H 0.15 2.98 7.64 -2.91 -0.02 2.96 16 36 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -78.01 312.16 3.93 -74.07 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.25 Total: 21.53 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.20 Total: -15.84 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.31 Total: -80.31 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.09 Total: -41.61 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.16 kcal Total: -78.01 3.93 -74.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.687 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds