Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46210 * 126.95924 * 2 1 4 4 C 1.39728 * 134.18041 * 0.04281 * 3 2 1 5 5 C 1.36622 * 119.70855 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.77670 * 180.02562 * 5 4 3 7 7 C 1.38837 * 120.44026 * 359.97438 * 5 4 3 8 8 C 1.37818 * 120.74990 * 0.02562 * 7 5 4 9 9 C 1.38999 * 119.85855 * 0.25090 * 8 7 5 10 10 O 1.34736 * 133.22358 * 180.47917 * 9 8 7 11 11 C 1.34951 * 110.86580 * 179.52461 * 10 9 8 12 12 C 1.46805 * 125.14807 * 179.75089 * 11 10 9 13 13 O 1.21705 * 120.00367 * 168.83545 * 12 11 10 14 14 N 1.34787 * 119.99748 * 348.83495 * 12 11 10 15 15 C 1.46496 * 119.99929 * 185.33950 * 14 12 11 16 16 C 1.36786 * 119.99556 * 5.34307 * 14 12 11 17 17 H 1.07999 * 120.00317 * 318.52110 * 16 14 12 18 18 C 1.39079 * 119.99446 * 138.52917 * 16 14 12 19 19 N 1.31347 * 120.00277 * 349.80204 * 18 16 14 20 20 Si 1.86807 * 119.99623 * 169.80520 * 18 16 14 21 21 H 1.48493 * 109.47314 * 59.99611 * 20 18 16 22 22 H 1.48501 * 109.46913 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46865 * 299.99527 * 20 18 16 24 24 H 1.09004 * 109.47073 * 90.00014 * 1 2 3 25 25 H 1.09004 * 109.46914 * 209.99403 * 1 2 3 26 26 H 1.09002 * 109.47570 * 329.99652 * 1 2 3 27 27 H 1.08006 * 120.14171 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47023 * 269.98171 * 6 5 4 29 29 H 1.08997 * 109.47225 * 29.98354 * 6 5 4 30 30 H 1.09004 * 109.46839 * 149.97654 * 6 5 4 31 31 H 1.07998 * 119.62095 * 180.02562 * 7 5 4 32 32 H 1.08002 * 120.07027 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47294 * 1.42988 * 15 14 12 34 34 H 1.09000 * 109.47084 * 121.43059 * 15 14 12 35 35 H 1.09002 * 109.47498 * 241.42625 * 15 14 12 36 36 H 0.97000 * 120.00342 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3861 1.1683 0.0000 4 6 2.1709 2.5489 0.0007 5 6 3.2391 3.4007 0.0010 6 6 3.0087 4.8900 0.0024 7 6 4.5353 2.9034 0.0011 8 6 4.7689 1.5451 0.0004 9 6 3.6982 0.6588 -0.0057 10 8 3.6134 -0.6859 0.0003 11 6 2.3246 -1.0862 0.0000 12 6 1.8736 -2.4833 0.0005 13 8 0.7026 -2.7447 0.2042 14 7 2.7566 -3.4765 -0.2248 15 6 2.2889 -4.8600 -0.3407 16 6 4.0892 -3.1926 -0.3451 17 1 4.4083 -2.3251 -0.9037 18 6 5.0333 -4.0212 0.2519 19 7 4.6499 -4.9548 1.0925 20 14 6.8467 -3.8065 -0.1420 21 1 7.2776 -2.4378 0.2404 22 1 7.6400 -4.8053 0.6184 23 1 7.0640 -4.0053 -1.5975 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.1645 2.9409 0.0019 28 1 2.9531 5.2500 -1.0249 29 1 2.0738 5.1126 0.5166 30 1 3.8328 5.3846 0.5167 31 1 5.3700 3.5887 0.0017 32 1 5.7818 1.1702 0.0000 33 1 1.2035 -4.8860 -0.2434 34 1 2.5762 -5.2604 -1.3130 35 1 2.7390 -5.4630 0.4479 36 1 5.3083 -5.5325 1.5092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150775183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -7.849225 kcal Electronic energy + Delta-G solvation = -20887.345001 eV Core-core repulsion = 17724.009248 eV Total energy + Delta-G solvation = -3163.335753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.86033 -38.53331 -37.68953 -35.05745 -33.21550 -31.95548 -31.58805 -29.74307 -27.70292 -26.44504 -26.13610 -24.72872 -22.78127 -21.33073 -19.91374 -19.36104 -17.96207 -16.75384 -16.07176 -15.63504 -15.07040 -14.93379 -14.48931 -14.21170 -13.81523 -13.73746 -13.49648 -13.26404 -12.76647 -12.55458 -12.21991 -12.11949 -11.98388 -11.77054 -11.37726 -11.36138 -11.22626 -11.21610 -10.99638 -10.58544 -10.46277 -10.41688 -9.43949 -9.30840 -8.80459 -8.07746 -7.76721 -7.47661 -6.41091 -4.22698 1.11512 1.65682 2.45204 3.11735 3.15624 3.17731 3.30321 3.95460 4.00237 4.19156 4.48769 4.91979 4.96151 4.98902 5.09433 5.29889 5.46240 5.49797 5.59410 5.70366 5.79113 5.92474 5.98900 6.08986 6.16889 6.30514 6.43563 6.53523 6.65838 6.67584 6.75330 6.77211 6.97513 7.00282 7.22470 7.48567 7.70983 7.77667 8.27390 8.93052 9.26074 9.69000 10.54442 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.006729 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.641129 B = 4160.309646 C = 5529.092686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.147 4.147 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.102 4.102 8 C -0.102 4.102 9 C 0.044 3.956 10 O -0.146 6.146 11 C 0.042 3.958 12 C 0.527 3.473 13 O -0.584 6.584 14 N -0.415 5.415 15 C 0.078 3.922 16 C -0.339 4.339 17 H 0.102 0.898 18 C 0.049 3.951 19 N -0.860 5.860 20 Si 0.924 3.076 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.270 1.270 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 12.655 -2.290 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.151 4.151 3 C -0.126 4.126 4 C -0.089 4.089 5 C -0.116 4.116 6 C -0.162 4.162 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.005 4.005 10 O -0.045 6.045 11 C -0.010 4.010 12 C 0.316 3.684 13 O -0.472 6.472 14 N -0.130 5.130 15 C -0.065 4.065 16 C -0.467 4.467 17 H 0.120 0.880 18 C -0.158 4.158 19 N -0.496 5.496 20 Si 0.750 3.250 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.195 1.195 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.423 12.081 -2.074 12.265 hybrid contribution 1.113 0.063 -0.141 1.123 sum 0.690 12.144 -2.214 12.363 Atomic orbital electron populations 1.20252 0.88357 1.03137 1.01913 1.21135 0.96551 0.89373 1.08045 1.19815 0.92755 0.93964 1.06044 1.20076 0.98667 0.90349 0.99840 1.19378 0.92931 0.95776 1.03526 1.20691 1.02155 0.91422 1.01934 1.20696 0.96424 0.93652 1.01255 1.19935 0.96835 0.91107 1.04209 1.20031 0.95218 0.83259 1.02021 1.84697 1.27257 1.18441 1.74099 1.22226 0.80345 0.95276 1.03102 1.17059 0.86156 0.82220 0.83014 1.90657 1.17651 1.81974 1.56872 1.43339 1.06601 1.05504 1.57592 1.21829 0.98651 0.83880 1.02109 1.19661 0.80130 1.13281 1.33582 0.88041 1.25537 1.00737 0.95844 0.93676 1.69742 1.35472 1.19256 1.25144 0.86037 0.81518 0.78631 0.78837 1.19343 1.20660 1.19549 0.91955 0.88976 0.92574 0.86071 0.91599 0.91843 0.91799 0.85415 0.85212 0.92436 0.94080 0.88438 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 9.95 36.01 0.36 -1.06 16 2 C -0.15 -3.05 6.39 -102.24 -0.65 -3.70 16 3 C -0.12 -2.36 6.37 -105.19 -0.67 -3.03 16 4 C -0.07 -1.08 9.68 -39.61 -0.38 -1.47 16 5 C -0.12 -1.54 5.85 -104.98 -0.61 -2.15 16 6 C -0.11 -0.99 10.00 36.01 0.36 -0.63 16 7 C -0.10 -1.37 9.66 -39.51 -0.38 -1.76 16 8 C -0.10 -1.67 10.07 -39.45 -0.40 -2.07 16 9 C 0.04 0.88 7.41 -38.35 -0.28 0.59 16 10 O -0.15 -3.39 7.44 2.70 0.02 -3.37 16 11 C 0.04 0.98 6.75 -36.94 -0.25 0.73 16 12 C 0.53 13.62 7.58 -12.79 -0.10 13.52 16 13 O -0.58 -15.37 13.98 5.18 0.07 -15.30 16 14 N -0.42 -10.92 2.90 -123.65 -0.36 -11.28 16 15 C 0.08 1.88 10.01 59.84 0.60 2.48 16 16 C -0.34 -8.92 7.96 -15.03 -0.12 -9.04 16 17 H 0.10 2.65 5.94 -52.49 -0.31 2.34 16 18 C 0.05 1.26 5.26 -17.45 -0.09 1.17 16 19 N -0.86 -22.79 11.12 55.50 0.62 -22.18 16 20 Si 0.92 19.79 29.57 -169.99 -5.03 14.77 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.09 1.81 6.21 -51.93 -0.32 1.48 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.06 1.33 6.92 -51.93 -0.36 0.97 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 2.47 5.88 -51.93 -0.31 2.17 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -29.55 305.40 -6.93 -36.48 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.23 Total: 2.68 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.62 Total: -6.40 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.26 Total: -33.45 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.09 Total: -18.67 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.55 -6.93 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150775183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.632 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds