Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46210 * 126.95924 * 2 1 4 4 C 1.39728 * 134.18041 * 0.04281 * 3 2 1 5 5 C 1.36622 * 119.70855 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.77670 * 180.02562 * 5 4 3 7 7 C 1.38837 * 120.44026 * 359.97438 * 5 4 3 8 8 C 1.37818 * 120.74990 * 0.02562 * 7 5 4 9 9 C 1.38999 * 119.85855 * 0.25090 * 8 7 5 10 10 O 1.34736 * 133.22358 * 180.47917 * 9 8 7 11 11 C 1.34951 * 110.86580 * 179.52461 * 10 9 8 12 12 C 1.46805 * 125.14807 * 179.75089 * 11 10 9 13 13 O 1.21705 * 120.00367 * 168.83545 * 12 11 10 14 14 N 1.34787 * 119.99748 * 348.83495 * 12 11 10 15 15 C 1.46496 * 119.99929 * 185.33950 * 14 12 11 16 16 C 1.36786 * 119.99556 * 5.34307 * 14 12 11 17 17 H 1.07999 * 120.00317 * 318.52110 * 16 14 12 18 18 C 1.39079 * 119.99446 * 138.52917 * 16 14 12 19 19 N 1.31347 * 120.00277 * 349.80204 * 18 16 14 20 20 Si 1.86807 * 119.99623 * 169.80520 * 18 16 14 21 21 H 1.48493 * 109.47314 * 59.99611 * 20 18 16 22 22 H 1.48501 * 109.46913 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46865 * 299.99527 * 20 18 16 24 24 H 1.09004 * 109.47073 * 90.00014 * 1 2 3 25 25 H 1.09004 * 109.46914 * 209.99403 * 1 2 3 26 26 H 1.09002 * 109.47570 * 329.99652 * 1 2 3 27 27 H 1.08006 * 120.14171 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47023 * 269.98171 * 6 5 4 29 29 H 1.08997 * 109.47225 * 29.98354 * 6 5 4 30 30 H 1.09004 * 109.46839 * 149.97654 * 6 5 4 31 31 H 1.07998 * 119.62095 * 180.02562 * 7 5 4 32 32 H 1.08002 * 120.07027 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47294 * 1.42988 * 15 14 12 34 34 H 1.09000 * 109.47084 * 121.43059 * 15 14 12 35 35 H 1.09002 * 109.47498 * 241.42625 * 15 14 12 36 36 H 0.97000 * 120.00342 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3861 1.1683 0.0000 4 6 2.1709 2.5489 0.0007 5 6 3.2391 3.4007 0.0010 6 6 3.0087 4.8900 0.0024 7 6 4.5353 2.9034 0.0011 8 6 4.7689 1.5451 0.0004 9 6 3.6982 0.6588 -0.0057 10 8 3.6134 -0.6859 0.0003 11 6 2.3246 -1.0862 0.0000 12 6 1.8736 -2.4833 0.0005 13 8 0.7026 -2.7447 0.2042 14 7 2.7566 -3.4765 -0.2248 15 6 2.2889 -4.8600 -0.3407 16 6 4.0892 -3.1926 -0.3451 17 1 4.4083 -2.3251 -0.9037 18 6 5.0333 -4.0212 0.2519 19 7 4.6499 -4.9548 1.0925 20 14 6.8467 -3.8065 -0.1420 21 1 7.2776 -2.4378 0.2404 22 1 7.6400 -4.8053 0.6184 23 1 7.0640 -4.0053 -1.5975 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.1645 2.9409 0.0019 28 1 2.9531 5.2500 -1.0249 29 1 2.0738 5.1126 0.5166 30 1 3.8328 5.3846 0.5167 31 1 5.3700 3.5887 0.0017 32 1 5.7818 1.1702 0.0000 33 1 1.2035 -4.8860 -0.2434 34 1 2.5762 -5.2604 -1.3130 35 1 2.7390 -5.4630 0.4479 36 1 5.3083 -5.5325 1.5092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150775183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -24.100442 kcal Electronic energy + Delta-G solvation = -20888.049706 eV Core-core repulsion = 17724.009248 eV Total energy + Delta-G solvation = -3164.040458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.36458 -40.35624 -39.02702 -36.98796 -34.75151 -33.60333 -33.02007 -31.08595 -29.34616 -28.04335 -27.43397 -26.54144 -24.26224 -22.61625 -21.52349 -21.03068 -19.72014 -18.34903 -17.68318 -17.26111 -16.71801 -16.58758 -16.09640 -15.71640 -15.63481 -15.02651 -14.73375 -14.39404 -14.25407 -14.06645 -13.87168 -13.64692 -13.25299 -13.08367 -13.03636 -12.85495 -12.77682 -12.65998 -12.51064 -12.34813 -12.14510 -11.77261 -11.21757 -10.83000 -10.71874 -9.66976 -9.34579 -9.03017 -8.34350 -6.24437 -0.29906 0.40340 0.92030 1.39434 1.42915 1.50683 1.78548 2.21712 2.31011 2.72531 2.77991 3.02768 3.60322 3.68773 3.92605 4.03016 4.18503 4.34943 4.43597 4.51578 4.65399 4.70508 4.77889 4.80663 4.85149 4.95898 5.00765 5.10051 5.20333 5.25331 5.28460 5.34992 5.50897 5.53318 5.63458 5.80813 5.83926 6.22325 6.32008 6.96074 7.30646 7.72842 8.62162 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.006729 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.641129 B = 4160.309646 C = 5529.092686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.127 4.127 3 C -0.148 4.148 4 C -0.072 4.072 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.079 4.079 8 C -0.122 4.122 9 C 0.014 3.986 10 O -0.175 6.175 11 C -0.017 4.017 12 C 0.520 3.480 13 O -0.603 6.603 14 N -0.435 5.435 15 C 0.084 3.916 16 C -0.355 4.355 17 H 0.097 0.903 18 C 0.007 3.993 19 N -0.892 5.892 20 Si 0.989 3.011 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.261 1.261 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.171 0.829 32 H 0.139 0.861 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 16.620 -2.669 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C -0.149 4.149 4 C -0.090 4.090 5 C -0.107 4.107 6 C -0.160 4.160 7 C -0.097 4.097 8 C -0.141 4.141 9 C -0.035 4.035 10 O -0.076 6.076 11 C -0.067 4.067 12 C 0.310 3.690 13 O -0.492 6.492 14 N -0.150 5.150 15 C -0.058 4.058 16 C -0.483 4.483 17 H 0.114 0.886 18 C -0.197 4.197 19 N -0.528 5.528 20 Si 0.811 3.189 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.186 1.186 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.166 0.834 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.188 0.812 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.542 16.054 -2.458 16.251 hybrid contribution 0.757 -0.871 -0.014 1.154 sum 1.299 15.183 -2.472 15.438 Atomic orbital electron populations 1.20320 0.86568 1.03645 1.02945 1.21653 0.97788 0.89485 1.04147 1.19998 0.91707 0.95134 1.08036 1.20472 1.00892 0.88702 0.98927 1.19942 0.92153 0.97961 1.00651 1.20794 1.03718 0.88037 1.03453 1.21280 0.98152 0.92791 0.97456 1.20320 0.96546 0.91973 1.05245 1.20678 0.97198 0.82310 1.03282 1.84551 1.27070 1.20534 1.75417 1.21892 0.81529 0.94846 1.08409 1.17454 0.85995 0.83450 0.82141 1.90605 1.18112 1.82928 1.57554 1.43569 1.06947 1.06087 1.58435 1.21741 0.98533 0.83415 1.02139 1.19798 0.80481 1.13710 1.34268 0.88607 1.26405 1.04827 0.95268 0.93174 1.69848 1.36857 1.20058 1.26068 0.85059 0.76131 0.78635 0.79034 1.19059 1.19826 1.18590 0.90480 0.91319 0.89071 0.83427 0.89982 0.90630 0.89779 0.81163 0.84269 0.92234 0.92996 0.89860 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 9.95 71.24 0.71 -2.03 16 2 C -0.13 -5.32 6.39 -18.32 -0.12 -5.44 16 3 C -0.15 -5.46 6.37 -20.23 -0.13 -5.59 16 4 C -0.07 -1.95 9.68 22.25 0.22 -1.73 16 5 C -0.11 -2.33 5.85 -20.10 -0.12 -2.45 16 6 C -0.10 -1.33 10.00 71.24 0.71 -0.62 16 7 C -0.08 -1.79 9.66 22.31 0.22 -1.57 16 8 C -0.12 -3.79 10.07 22.35 0.23 -3.56 16 9 C 0.01 0.55 7.41 23.07 0.17 0.72 16 10 O -0.17 -8.54 7.44 -13.24 -0.10 -8.64 16 11 C -0.02 -0.84 6.75 23.98 0.16 -0.68 16 12 C 0.52 28.44 7.58 86.48 0.66 29.09 16 13 O -0.60 -33.43 13.98 -4.36 -0.06 -33.50 16 14 N -0.43 -24.14 2.90 -663.33 -1.93 -26.07 16 15 C 0.08 4.28 10.01 127.77 1.28 5.56 16 16 C -0.36 -19.58 7.96 84.12 0.67 -18.91 16 17 H 0.10 5.29 5.94 -2.91 -0.02 5.27 16 18 C 0.01 0.37 5.26 84.97 0.45 0.82 16 19 N -0.89 -48.87 11.12 21.69 0.24 -48.63 16 20 Si 0.99 41.20 29.57 68.60 2.03 43.23 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 24 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.07 2.75 6.21 -2.39 -0.01 2.74 16 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.06 2.91 6.92 -2.39 -0.02 2.89 16 34 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 4.46 5.88 -2.39 -0.01 4.45 16 36 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -68.53 305.40 6.38 -62.15 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.10 Total: 17.84 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.10 Total: -6.39 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.68 Total: -74.69 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.16 Total: -42.13 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -68.53 6.38 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150775183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.047 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds