Wall clock time and date at job start Mon Mar 30 2020 01:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86790 * 120.00083 * 2 1 4 4 H 1.48503 * 109.47330 * 239.99903 * 3 2 1 5 5 H 1.48499 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47610 * 120.00007 * 3 2 1 7 7 C 1.40017 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99908 * 185.73825 * 7 2 1 9 9 N 1.35087 * 120.00362 * 5.74239 * 7 2 1 10 10 C 1.46501 * 120.00306 * 45.48733 * 9 7 2 11 11 C 1.50701 * 109.46604 * 94.00820 * 10 9 7 12 12 C 1.38237 * 119.99965 * 85.77313 * 11 10 9 13 13 C 1.38235 * 119.99799 * 179.97438 * 12 11 10 14 14 C 1.38233 * 120.00357 * 0.08938 * 13 12 11 15 15 C 1.38238 * 119.99775 * 359.86066 * 14 13 12 16 16 C 1.38230 * 119.99970 * 0.09528 * 15 14 13 17 17 C 1.34780 * 119.99773 * 225.49358 * 9 7 2 18 18 O 1.21604 * 119.99873 * 175.46088 * 17 9 7 19 19 C 1.48029 * 120.00271 * 355.46078 * 17 9 7 20 20 O 1.20830 * 119.99674 * 5.80008 * 19 17 9 21 21 C 1.50700 * 120.00219 * 185.80155 * 19 17 9 22 22 C 1.52995 * 117.50106 * 223.74797 * 21 19 17 23 23 C 1.52995 * 117.49901 * 155.08242 * 21 19 17 24 24 H 0.96997 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47242 * 334.01044 * 10 9 7 26 26 H 1.08994 * 109.47371 * 214.00592 * 10 9 7 27 27 H 1.07998 * 120.00081 * 359.69231 * 12 11 10 28 28 H 1.08007 * 119.99677 * 179.97438 * 13 12 11 29 29 H 1.07998 * 120.00080 * 179.97438 * 14 13 12 30 30 H 1.07998 * 119.99824 * 180.02562 * 15 14 13 31 31 H 1.07997 * 119.99849 * 179.97438 * 16 15 14 32 32 H 1.08997 * 115.54799 * 9.41935 * 21 19 17 33 33 H 1.09003 * 117.49724 * 359.97438 * 22 21 19 34 34 H 1.08998 * 117.50183 * 145.02278 * 22 21 19 35 35 H 1.08994 * 117.50431 * 214.97945 * 23 21 19 36 36 H 1.09002 * 117.50098 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.0954 1.6963 -1.2125 5 1 1.2767 2.7464 -0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0077 -1.2126 0.0005 8 1 3.0836 -1.2150 0.0941 9 7 1.3373 -2.3796 -0.1160 10 6 0.2838 -2.5218 -1.1241 11 6 0.8663 -3.1214 -2.3780 12 6 0.9683 -4.4942 -2.5048 13 6 1.5021 -5.0442 -3.6553 14 6 1.9355 -4.2215 -4.6781 15 6 1.8325 -2.8487 -4.5516 16 6 1.2979 -2.2988 -3.4016 17 6 1.6376 -3.4132 0.6953 18 8 0.9801 -4.4350 0.6470 19 6 2.7678 -3.3045 1.6451 20 8 3.3547 -2.2555 1.7682 21 6 3.1865 -4.5021 2.4584 22 6 3.4944 -4.2773 3.9401 23 6 4.6332 -4.5488 2.9539 24 1 -0.4849 0.8400 -0.0004 25 1 -0.1364 -1.5421 -1.3511 26 1 -0.5008 -3.1737 -0.7402 27 1 0.6353 -5.1368 -1.7033 28 1 1.5822 -6.1167 -3.7542 29 1 2.3529 -4.6512 -5.5767 30 1 2.1707 -2.2060 -5.3509 31 1 1.2178 -1.2263 -3.3027 32 1 2.7195 -5.4466 2.1790 33 1 3.3945 -3.2630 4.3266 34 1 3.2303 -5.0740 4.6355 35 1 5.1179 -5.5239 3.0010 36 1 5.2824 -3.7135 2.6913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182668947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:15 Heat of formation + Delta-G solvation = -17.912554 kcal Electronic energy + Delta-G solvation = -20963.104480 eV Core-core repulsion = 17799.332348 eV Total energy + Delta-G solvation = -3163.772131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55437 -40.19288 -39.08157 -37.33752 -36.61441 -33.89214 -32.44806 -31.71686 -28.26388 -27.53796 -26.03470 -23.36320 -23.34940 -22.98149 -21.73268 -20.62466 -19.46076 -18.01648 -17.35610 -17.30140 -16.87219 -16.14590 -16.05837 -15.90498 -15.78160 -15.41380 -15.03957 -14.49464 -14.22654 -13.78214 -13.63715 -13.54349 -13.26526 -13.14495 -13.00628 -12.55603 -12.43879 -12.25142 -12.02533 -11.78544 -11.68420 -11.50232 -11.41138 -11.11923 -10.13040 -9.76694 -9.62118 -9.43743 -8.39797 -6.18260 0.25361 0.48144 0.55597 1.39734 1.42920 1.49961 2.18724 2.24265 2.47008 2.90031 2.97050 3.09483 3.71900 3.78926 4.02639 4.05936 4.10098 4.20455 4.24957 4.34676 4.36733 4.52659 4.69126 4.71863 4.83852 4.91081 5.04991 5.11868 5.19185 5.20001 5.25798 5.42723 5.62718 5.63443 5.82131 5.92282 6.15830 6.19843 6.53841 6.95808 7.35618 7.79730 8.59568 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.008861 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.920860 B = 3159.266362 C = 4769.830665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.011 3.989 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.343 4.343 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.143 3.857 11 C -0.107 4.107 12 C -0.123 4.123 13 C -0.128 4.128 14 C -0.120 4.120 15 C -0.125 4.125 16 C -0.115 4.115 17 C 0.400 3.600 18 O -0.606 6.606 19 C 0.368 3.632 20 O -0.439 6.439 21 C -0.224 4.224 22 C -0.137 4.137 23 C -0.134 4.134 24 H 0.279 0.721 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.108 0.892 28 H 0.144 0.856 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -5.874 -3.240 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.472 4.472 8 H 0.113 0.887 9 N -0.107 5.107 10 C 0.021 3.979 11 C -0.108 4.108 12 C -0.142 4.142 13 C -0.145 4.145 14 C -0.138 4.138 15 C -0.143 4.143 16 C -0.133 4.133 17 C 0.189 3.811 18 O -0.494 6.494 19 C 0.242 3.758 20 O -0.310 6.310 21 C -0.243 4.243 22 C -0.174 4.174 23 C -0.170 4.170 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.162 0.838 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.824 -5.631 -3.201 8.710 hybrid contribution -0.307 0.948 0.201 1.017 sum 5.517 -4.682 -3.001 7.833 Atomic orbital electron populations 1.69568 1.07749 1.29467 1.45224 1.26442 0.95938 1.02873 0.94171 0.85152 0.78222 0.76565 0.79489 1.18402 1.19673 1.19869 1.19800 0.92657 0.83089 1.51704 0.88665 1.43221 1.30899 1.11122 1.25475 1.20492 0.89788 1.01967 0.85691 1.20400 1.00262 0.94379 0.95787 1.21283 1.00061 0.94380 0.98434 1.21415 0.98851 1.01040 0.93229 1.21484 0.99530 0.93241 0.99569 1.21428 0.99324 0.96172 0.97377 1.21162 0.98768 0.99442 0.93963 1.21068 0.89483 0.86085 0.84486 1.90547 1.55007 1.31890 1.71987 1.23650 0.81916 0.88859 0.81418 1.90345 1.49531 1.30815 1.60360 1.22485 1.03724 0.98959 0.99158 1.23087 1.01284 1.04053 0.88983 1.23111 0.88356 1.04964 1.00614 0.91029 0.87707 0.93532 0.87375 0.83806 0.82614 0.83464 0.87085 0.85166 0.89365 0.84749 0.84590 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.21 11.16 21.84 0.24 -46.97 16 2 C 0.01 0.56 5.22 85.28 0.45 1.00 16 3 Si 0.98 41.36 29.56 68.60 2.03 43.39 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.34 -18.60 7.69 84.62 0.65 -17.94 16 8 H 0.10 5.29 6.07 -2.91 -0.02 5.27 16 9 N -0.39 -20.90 2.43 -643.28 -1.56 -22.47 16 10 C 0.14 7.22 5.02 85.63 0.43 7.65 16 11 C -0.11 -4.71 5.43 -19.86 -0.11 -4.82 16 12 C -0.12 -4.93 9.57 22.27 0.21 -4.72 16 13 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 14 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 15 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 16 C -0.11 -4.46 9.68 22.27 0.22 -4.25 16 17 C 0.40 20.86 7.60 86.84 0.66 21.52 16 18 O -0.61 -32.24 14.89 -4.04 -0.06 -32.30 16 19 C 0.37 16.93 6.83 28.29 0.19 17.12 16 20 O -0.44 -21.55 13.54 -1.66 -0.02 -21.57 16 21 C -0.22 -7.79 5.93 -11.54 -0.07 -7.85 16 22 C -0.14 -3.72 10.14 30.62 0.31 -3.40 16 23 C -0.13 -3.51 10.05 30.62 0.31 -3.20 16 24 H 0.28 13.91 8.29 -92.71 -0.77 13.15 16 25 H 0.11 5.55 5.49 -2.39 -0.01 5.53 16 26 H 0.05 2.45 7.45 -2.39 -0.02 2.43 16 27 H 0.11 4.68 7.07 -2.91 -0.02 4.66 16 28 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.13 4.46 7.74 -2.39 -0.02 4.44 16 33 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.09 2.63 7.89 -2.39 -0.02 2.61 16 Total: -1.00 -65.47 312.86 5.64 -59.83 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 1.09 Total: 29.45 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 3.92 Total: -9.37 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.32 Total: -69.43 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.08 Total: -53.87 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -65.47 5.64 -59.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182668947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.921 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds