Wall clock time and date at job start Mon Mar 30 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99799 * 2 1 4 4 H 1.48498 * 109.47008 * 274.71639 * 3 2 1 5 5 H 1.48498 * 109.47199 * 34.72195 * 3 2 1 6 6 H 1.48501 * 109.46917 * 154.72118 * 3 2 1 7 7 C 1.37873 * 120.00053 * 179.71970 * 2 1 3 8 8 H 1.08004 * 120.00049 * 175.61619 * 7 2 1 9 9 C 1.50695 * 120.00343 * 355.61926 * 7 2 1 10 10 N 1.46504 * 110.01668 * 61.67423 * 9 7 2 11 11 S 1.65607 * 119.99751 * 50.96353 * 10 9 7 12 12 O 1.42100 * 104.27381 * 182.56095 * 11 10 9 13 13 O 1.42108 * 104.27445 * 310.41618 * 11 10 9 14 14 C 1.81393 * 104.44892 * 66.48719 * 11 10 9 15 15 C 1.53784 * 113.61801 * 270.84935 * 14 11 10 16 16 C 1.53774 * 87.08320 * 220.02131 * 15 14 11 17 17 C 1.53781 * 113.61094 * 173.35589 * 14 11 10 18 18 C 1.54265 * 110.03104 * 300.28704 * 9 7 2 19 19 C 1.54963 * 104.15901 * 217.12933 * 18 9 7 20 20 C 1.54896 * 102.77569 * 37.89153 * 19 18 9 21 21 C 1.53869 * 110.03554 * 183.06652 * 9 7 2 22 22 H 0.97000 * 120.00006 * 5.28033 * 1 2 3 23 23 H 0.96995 * 120.00464 * 230.96694 * 10 9 7 24 24 H 1.09000 * 112.84901 * 42.15979 * 14 11 10 25 25 H 1.09007 * 113.61141 * 334.57594 * 15 14 11 26 26 H 1.09000 * 113.61364 * 105.46664 * 15 14 11 27 27 H 1.09000 * 113.61530 * 270.88350 * 16 15 14 28 28 H 1.09007 * 113.60945 * 139.98235 * 16 15 14 29 29 H 1.09002 * 113.61228 * 254.52474 * 17 14 11 30 30 H 1.09000 * 113.61837 * 25.35004 * 17 14 11 31 31 H 1.08996 * 110.48518 * 335.78124 * 18 9 7 32 32 H 1.09004 * 110.48750 * 98.42600 * 18 9 7 33 33 H 1.09001 * 110.72663 * 279.57404 * 19 18 9 34 34 H 1.09000 * 110.92178 * 156.29399 * 19 18 9 35 35 H 1.09004 * 110.48300 * 203.40211 * 20 19 18 36 36 H 1.08996 * 110.48898 * 80.75978 * 20 19 18 37 37 H 1.09004 * 110.03665 * 238.57065 * 21 9 7 38 38 H 1.08993 * 110.03343 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3968 2.1040 -1.3953 5 1 1.5000 2.6219 0.7975 6 1 3.5930 1.4135 0.5979 7 6 2.0045 -1.1940 0.0058 8 1 3.0821 -1.1957 -0.0656 9 6 1.2544 -2.4967 0.1119 10 7 0.3598 -2.6553 -1.0374 11 16 0.9449 -2.4633 -2.5747 12 8 -0.1956 -2.6267 -3.4066 13 8 1.6486 -1.2295 -2.5303 14 6 2.0978 -3.8461 -2.7962 15 6 3.5353 -3.5268 -2.3530 16 6 4.0067 -4.3079 -3.5908 17 6 2.6491 -3.9653 -4.2268 18 6 0.4421 -2.5335 1.4228 19 6 0.5453 -4.0069 1.8915 20 6 2.0018 -4.3827 1.5219 21 6 2.2454 -3.6720 0.1745 22 1 -0.4850 0.8365 -0.0773 23 1 -0.5752 -2.8726 -0.8980 24 1 1.7145 -4.7849 -2.3963 25 1 3.7774 -2.4645 -2.3886 26 1 3.8152 -3.9942 -1.4089 27 1 4.1467 -5.3733 -3.4076 28 1 4.8552 -3.8497 -4.0992 29 1 2.2137 -4.7870 -4.7955 30 1 2.6477 -3.0234 -4.7753 31 1 0.8825 -1.8659 2.1634 32 1 -0.5974 -2.2640 1.2352 33 1 -0.1643 -4.6340 1.3518 34 1 0.3873 -4.0852 2.9672 35 1 2.0998 -5.4622 1.4071 36 1 2.6946 -4.0141 2.2783 37 1 2.0604 -4.3609 -0.6498 38 1 3.2690 -3.3003 0.1277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188166763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:52 Heat of formation + Delta-G solvation = -47.579352 kcal Electronic energy + Delta-G solvation = -21373.914331 eV Core-core repulsion = 18344.299703 eV Total energy + Delta-G solvation = -3029.614629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.45400 -37.53586 -35.79716 -34.57945 -32.71661 -31.31978 -28.13417 -26.95249 -25.79665 -25.37475 -23.78251 -19.88507 -19.66108 -19.14118 -18.18793 -17.02059 -16.04227 -15.91100 -15.31730 -14.85688 -14.38547 -14.23264 -13.67200 -13.22931 -12.93140 -12.51463 -12.25972 -12.12828 -11.72559 -11.61650 -11.33465 -11.01662 -10.92733 -10.68754 -10.62872 -10.52121 -10.47184 -10.37026 -10.11827 -10.06403 -9.81107 -9.69398 -9.55658 -9.32243 -9.11785 -8.29373 -7.77713 -5.92285 -3.97541 1.46284 3.42653 3.49834 3.53993 4.02416 4.49454 4.57945 4.67954 4.93269 5.00567 5.18559 5.37397 5.61154 5.62937 5.67832 5.68456 5.75520 5.90677 5.94447 6.00292 6.23710 6.28480 6.33802 6.35271 6.54085 6.56337 6.61699 6.71622 6.75819 6.80908 7.10116 7.15249 7.42345 7.70323 8.03392 8.32982 8.57897 8.99610 9.70973 11.12705 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.010980 C = 0.008734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.374643 B = 2549.394695 C = 3205.207231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.101 3.899 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.299 3.701 10 N -1.076 6.076 11 S 2.611 3.389 12 O -1.006 7.006 13 O -0.919 6.919 14 C -0.636 4.636 15 C -0.108 4.108 16 C -0.135 4.135 17 C -0.113 4.113 18 C -0.087 4.087 19 C -0.134 4.134 20 C -0.118 4.118 21 C -0.151 4.151 22 H 0.259 0.741 23 H 0.392 0.608 24 H 0.137 0.863 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -9.363 -1.441 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.105 4.105 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.214 3.786 10 N -0.833 5.833 11 S 2.702 3.298 12 O -0.996 6.996 13 O -0.908 6.908 14 C -0.741 4.741 15 C -0.146 4.146 16 C -0.173 4.173 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.172 4.172 20 C -0.156 4.156 21 C -0.190 4.190 22 H 0.069 0.931 23 H 0.224 0.776 24 H 0.155 0.845 25 H 0.124 0.876 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.423 -8.554 -2.048 9.845 hybrid contribution 0.155 0.140 0.194 0.285 sum 4.578 -8.414 -1.853 9.757 Atomic orbital electron populations 1.69949 1.06070 1.26775 1.47910 1.24755 0.94486 0.98868 0.92400 0.86650 0.79845 0.83817 0.78040 1.20358 1.21839 1.20010 1.21252 0.93016 0.89538 1.51483 0.91897 1.18339 0.85570 0.91515 0.83178 1.55818 1.18407 1.87363 1.21677 1.05317 0.74708 0.76218 0.73525 1.93449 1.49254 1.88005 1.68898 1.93642 1.75399 1.36466 1.85325 1.32311 1.14753 1.22441 1.04630 1.22873 0.90334 1.02630 0.98756 1.22815 0.96346 1.00434 0.97680 1.22466 0.97376 1.02477 0.92818 1.22383 1.00861 0.92139 0.97310 1.22663 0.96099 0.99349 0.99091 1.22273 0.97164 0.98103 0.98035 1.23296 1.01247 0.98182 0.96272 0.93149 0.77589 0.84544 0.87614 0.89321 0.90281 0.91357 0.90596 0.89864 0.91641 0.91607 0.92866 0.93271 0.93575 0.92275 0.92614 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.77 11.86 55.43 0.66 -23.12 16 2 C 0.10 2.70 4.29 -17.82 -0.08 2.62 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -12.79 5.69 -34.44 -0.20 -12.99 16 8 H 0.06 1.58 7.33 -52.48 -0.38 1.19 16 9 C 0.30 6.42 0.62 -131.86 -0.08 6.34 16 10 N -1.08 -23.10 4.73 0.51 0.00 -23.10 16 11 S 2.61 56.00 5.44 -107.50 -0.58 55.42 16 12 O -1.01 -24.06 18.08 -57.54 -1.04 -25.10 16 13 O -0.92 -22.97 13.74 -57.54 -0.79 -23.76 16 14 C -0.64 -10.31 2.94 -25.92 -0.08 -10.38 16 15 C -0.11 -1.65 6.10 -25.92 -0.16 -1.81 16 16 C -0.13 -1.70 8.08 -25.92 -0.21 -1.91 16 17 C -0.11 -1.60 7.67 -25.92 -0.20 -1.80 16 18 C -0.09 -1.80 4.99 -25.03 -0.12 -1.92 16 19 C -0.13 -2.25 6.91 -24.69 -0.17 -2.42 16 20 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 21 C -0.15 -2.69 3.89 -25.62 -0.10 -2.78 16 22 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 23 H 0.39 8.19 8.40 -34.47 -0.29 7.90 16 24 H 0.14 1.97 7.11 -51.93 -0.37 1.60 16 25 H 0.11 1.81 7.33 -51.93 -0.38 1.43 16 26 H 0.09 1.27 5.34 -51.93 -0.28 0.99 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.06 1.45 7.85 -51.93 -0.41 1.05 16 32 H 0.07 1.46 7.60 -51.93 -0.39 1.06 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.90 4.30 -51.93 -0.22 0.68 16 38 H 0.07 1.24 5.85 -51.93 -0.30 0.94 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -30.60 297.26 -9.41 -40.01 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.55 Total: 7.47 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -1.56 Total: -29.11 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.66 Total: -46.22 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -1.83 Total: -48.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 56.00 SS G_CDS: -0.58 Total: 55.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.60 -9.41 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188166763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.572 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds