Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.84356 * 180.28098 * 7 2 1 9 9 C 1.53661 * 108.30723 * 231.37849 * 8 7 2 10 10 C 1.52955 * 109.32473 * 305.14049 * 9 8 7 11 11 H 1.08993 * 109.41712 * 303.61934 * 10 9 8 12 12 N 1.46507 * 109.35689 * 183.80059 * 10 9 8 13 13 S 1.65592 * 120.00357 * 94.67896 * 12 10 9 14 14 O 1.42103 * 104.28070 * 181.07396 * 13 12 10 15 15 O 1.42095 * 104.27753 * 308.93092 * 13 12 10 16 16 C 1.81400 * 104.44925 * 65.00117 * 13 12 10 17 17 C 1.53003 * 109.47419 * 179.97438 * 16 13 12 18 18 C 1.52996 * 117.49859 * 243.74787 * 17 16 13 19 19 C 1.53001 * 117.49804 * 175.08864 * 17 16 13 20 20 C 1.52959 * 109.81871 * 63.73117 * 10 9 8 21 21 C 1.51265 * 120.85558 * 359.97438 * 7 2 1 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.63062 * 351.03460 * 8 7 2 24 24 H 1.09001 * 109.62905 * 111.61311 * 8 7 2 25 25 H 1.09005 * 109.41865 * 185.24731 * 9 8 7 26 26 H 1.09000 * 109.62903 * 65.16130 * 9 8 7 27 27 H 0.97006 * 119.99565 * 274.68046 * 12 10 9 28 28 H 1.08997 * 109.47443 * 300.00518 * 16 13 12 29 29 H 1.09004 * 109.47183 * 60.00111 * 16 13 12 30 30 H 1.08997 * 115.54306 * 29.41525 * 17 16 13 31 31 H 1.09005 * 117.50283 * 0.02562 * 18 17 16 32 32 H 1.08996 * 117.49863 * 145.01633 * 18 17 16 33 33 H 1.09002 * 117.49506 * 214.98004 * 19 17 16 34 34 H 1.08991 * 117.49682 * 359.97438 * 19 17 16 35 35 H 1.09003 * 109.48108 * 176.42377 * 20 10 9 36 36 H 1.08995 * 109.49355 * 56.38407 * 20 10 9 37 37 H 1.08996 * 109.62656 * 248.39702 * 21 7 2 38 38 H 1.09001 * 109.62152 * 8.77046 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 6 3.5169 -1.2166 0.0058 9 6 3.9909 -2.1309 -1.1346 10 6 3.3400 -3.5069 -0.9840 11 1 3.5736 -3.9124 0.0004 12 7 3.8605 -4.4060 -2.0170 13 16 5.1397 -5.4020 -1.6799 14 8 5.3775 -6.0920 -2.8992 15 8 6.1206 -4.5368 -1.1244 16 6 4.5066 -6.5403 -0.4173 17 6 5.6089 -7.5235 -0.0182 18 6 5.3766 -9.0055 -0.3193 19 6 5.3078 -8.4972 1.1229 20 6 1.8230 -3.3824 -1.1356 21 6 1.2676 -2.5152 -0.0005 22 1 -0.4850 0.8401 0.0004 23 1 3.8988 -0.2076 -0.1496 24 1 3.8734 -1.6029 0.9607 25 1 5.0750 -2.2346 -1.0892 26 1 3.7069 -1.6974 -2.0935 27 1 3.4557 -4.4178 -2.8984 28 1 4.1910 -5.9729 0.4581 29 1 3.6564 -7.0917 -0.8188 30 1 6.6281 -7.1465 -0.1026 31 1 4.4387 -9.2800 -0.8022 32 1 6.2431 -9.6036 -0.6014 33 1 6.1291 -8.7611 1.7892 34 1 4.3247 -8.4370 1.5895 35 1 1.3707 -4.3731 -1.0908 36 1 1.5902 -2.9194 -2.0945 37 1 1.4197 -3.0193 0.9538 38 1 0.2030 -2.3406 -0.1566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188989669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -68.155781 kcal Electronic energy + Delta-G solvation = -19747.150490 eV Core-core repulsion = 16716.643600 eV Total energy + Delta-G solvation = -3030.506890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.75816 -37.58538 -36.80722 -35.75473 -33.70867 -31.26031 -29.65644 -29.39745 -26.87889 -22.67422 -22.11861 -21.52836 -21.35790 -19.63592 -19.07534 -17.45953 -16.85719 -16.13906 -15.81195 -15.28384 -14.64940 -14.47924 -14.45288 -13.53757 -13.22674 -12.89963 -12.52353 -12.42246 -12.23738 -12.05565 -11.94383 -11.81453 -11.79297 -11.41974 -11.37179 -11.07297 -10.90936 -10.65272 -10.50922 -10.24248 -10.16697 -10.03448 -9.65213 -9.18469 -8.94089 -8.53419 -8.42717 -6.13125 -4.03985 0.40400 2.94565 3.27278 3.35818 3.37544 3.40716 3.85085 4.26392 4.32861 4.37132 4.64155 4.69102 4.81393 5.11096 5.14803 5.26612 5.35878 5.37309 5.61270 5.80155 5.83341 5.84702 5.96689 6.04060 6.49129 6.59612 6.71579 6.87605 6.94946 7.03819 7.14905 7.33953 7.41852 7.62943 7.67508 7.78437 8.34231 8.93341 9.51927 10.96255 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031500 B = 0.004796 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.681607 B = 5837.201633 C = 6077.734744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.290 1.290 7 C -0.489 4.489 8 C -0.021 4.021 9 C -0.123 4.123 10 C 0.162 3.838 11 H 0.070 0.930 12 N -1.115 6.115 13 S 2.612 3.388 14 O -0.969 6.969 15 O -0.953 6.953 16 C -0.603 4.603 17 C -0.154 4.154 18 C -0.173 4.173 19 C -0.164 4.164 20 C -0.113 4.113 21 C 0.010 3.990 22 H 0.264 0.736 23 H 0.037 0.963 24 H 0.019 0.981 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.414 0.586 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.005 0.995 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -14.090 -0.447 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.217 1.217 7 C -0.508 4.508 8 C -0.060 4.060 9 C -0.163 4.163 10 C 0.057 3.943 11 H 0.088 0.912 12 N -0.875 5.875 13 S 2.704 3.296 14 O -0.959 6.959 15 O -0.943 6.943 16 C -0.731 4.731 17 C -0.173 4.173 18 C -0.210 4.210 19 C -0.202 4.202 20 C -0.153 4.153 21 C -0.028 4.028 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.248 0.752 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.009 -13.931 -0.663 16.083 hybrid contribution -0.411 0.724 0.055 0.835 sum 7.598 -13.207 -0.608 15.248 Atomic orbital electron populations 1.69833 1.06169 1.26981 1.49863 1.24847 0.94713 0.98642 0.94453 0.86680 0.80085 0.83190 0.78551 1.20397 1.18811 1.21690 1.20066 0.89466 0.91438 1.49866 1.19906 0.96512 0.95818 0.93731 1.22133 0.98123 0.94890 1.01164 1.20858 0.95919 0.89874 0.87664 0.91226 1.55782 1.54800 1.54288 1.22582 1.04864 0.74455 0.74858 0.75391 1.93564 1.84433 1.75914 1.41983 1.93609 1.57233 1.62600 1.80818 1.30281 1.08584 1.14405 1.19797 1.21661 0.97797 0.91149 1.06712 1.23146 1.03915 0.94930 0.98968 1.23008 1.03638 1.02202 0.91315 1.21967 0.92212 0.98579 1.02516 1.19384 0.98884 0.92926 0.91595 0.92588 0.94431 0.96247 0.93146 0.92527 0.75245 0.84489 0.84965 0.86815 0.88157 0.88070 0.88168 0.88154 0.94576 0.92346 0.97694 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 12.73 55.43 0.71 -24.27 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.79 27.52 -169.99 -4.68 16.11 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.26 -6.00 6.11 56.52 0.35 -5.66 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.49 -12.43 5.50 -98.92 -0.54 -12.97 16 8 C -0.02 -0.49 5.62 -27.26 -0.15 -0.65 16 9 C -0.12 -2.53 5.54 -26.41 -0.15 -2.67 16 10 C 0.16 2.88 2.45 -67.97 -0.17 2.72 16 11 H 0.07 1.16 7.14 -51.93 -0.37 0.79 16 12 N -1.12 -16.49 5.35 -4.93 -0.03 -16.52 16 13 S 2.61 37.23 5.33 -107.50 -0.57 36.66 16 14 O -0.97 -15.83 18.08 -57.54 -1.04 -16.87 16 15 O -0.95 -16.84 17.01 -57.54 -0.98 -17.82 16 16 C -0.60 -6.58 6.24 37.16 0.23 -6.35 16 17 C -0.15 -1.60 5.75 -90.62 -0.52 -2.12 16 18 C -0.17 -1.51 10.18 -26.70 -0.27 -1.78 16 19 C -0.16 -1.40 10.25 -26.69 -0.27 -1.68 16 20 C -0.11 -2.17 5.46 -26.62 -0.15 -2.31 16 21 C 0.01 0.24 5.97 -27.47 -0.16 0.07 16 22 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.04 0.87 4.60 -51.93 -0.24 0.63 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.01 7.33 -51.93 -0.38 0.63 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.41 5.47 8.80 -34.47 -0.30 5.17 16 28 H 0.14 1.41 7.44 -51.93 -0.39 1.03 16 29 H 0.13 1.20 7.87 -51.92 -0.41 0.80 16 30 H 0.11 1.15 8.06 -51.93 -0.42 0.73 16 31 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -31.50 314.57 -9.97 -41.47 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.86 Total: 2.30 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.25 Total: -25.80 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.68 Total: -40.79 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -2.02 Total: -34.68 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.68 Total: 16.11 kcal Atomic # 16 Polarization: 37.23 SS G_CDS: -0.57 Total: 36.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.50 -9.97 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188989669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.686 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds