Wall clock time and date at job start Mon Mar 30 2020 00:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00295 * 2 1 4 4 H 1.48497 * 109.46978 * 184.72887 * 3 2 1 5 5 H 1.48499 * 109.47039 * 304.72785 * 3 2 1 6 6 H 1.48500 * 109.47093 * 64.73023 * 3 2 1 7 7 C 1.37880 * 119.99597 * 179.72125 * 2 1 3 8 8 H 1.08001 * 119.99710 * 174.84686 * 7 2 1 9 9 C 1.50705 * 119.99973 * 354.85059 * 7 2 1 10 10 N 1.46503 * 110.01651 * 64.35341 * 9 7 2 11 11 S 1.65604 * 120.00031 * 53.00791 * 10 9 7 12 12 O 1.42104 * 104.27378 * 179.97438 * 11 10 9 13 13 O 1.42097 * 104.27829 * 307.82482 * 11 10 9 14 14 C 1.81396 * 104.44846 * 63.90066 * 11 10 9 15 15 C 1.52999 * 109.47131 * 175.07479 * 14 11 10 16 16 C 1.52996 * 117.49975 * 244.11453 * 15 14 11 17 17 C 1.53001 * 117.49749 * 175.48853 * 15 14 11 18 18 C 1.54262 * 110.03121 * 302.96123 * 9 7 2 19 19 C 1.54960 * 104.15818 * 217.13821 * 18 9 7 20 20 C 1.54893 * 102.77897 * 37.88719 * 19 18 9 21 21 C 1.53871 * 110.02881 * 185.74304 * 9 7 2 22 22 H 0.97007 * 119.99625 * 5.28038 * 1 2 3 23 23 H 0.97003 * 119.99425 * 233.00897 * 10 9 7 24 24 H 1.09003 * 109.46843 * 295.07558 * 14 11 10 25 25 H 1.08997 * 109.47290 * 55.07631 * 14 11 10 26 26 H 1.09000 * 115.54857 * 29.82598 * 15 14 11 27 27 H 1.08998 * 117.50143 * 359.97438 * 16 15 14 28 28 H 1.08997 * 117.49742 * 145.01912 * 16 15 14 29 29 H 1.08999 * 117.50190 * 214.97605 * 17 15 14 30 30 H 1.08999 * 117.50044 * 0.02562 * 17 15 14 31 31 H 1.08995 * 110.48712 * 335.78437 * 18 9 7 32 32 H 1.09002 * 110.49000 * 98.42727 * 18 9 7 33 33 H 1.08997 * 110.72119 * 279.57135 * 19 18 9 34 34 H 1.09006 * 110.76685 * 156.22303 * 19 18 9 35 35 H 1.08998 * 110.48330 * 203.40136 * 20 19 18 36 36 H 1.09004 * 110.48146 * 80.76083 * 20 19 18 37 37 H 1.08998 * 110.03208 * 238.56686 * 21 9 7 38 38 H 1.08994 * 110.03485 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7051 1.3486 -0.1154 5 1 1.8060 2.4452 -1.1507 6 1 1.9792 2.3452 1.2661 7 6 2.0045 -1.1941 0.0058 8 1 3.0812 -1.1964 -0.0782 9 6 1.2554 -2.4960 0.1293 10 7 0.3948 -2.6922 -1.0400 11 16 1.0341 -2.5941 -2.5645 12 8 -0.0716 -2.8341 -3.4242 13 8 1.7163 -1.3477 -2.5789 14 6 2.2160 -3.9677 -2.6489 15 6 2.7904 -4.0600 -4.0639 16 6 2.4832 -5.3235 -4.8701 17 6 3.8900 -5.0941 -4.3139 18 6 0.4058 -2.4967 1.4169 19 6 0.5001 -3.9550 1.9323 20 6 1.9677 -4.3361 1.6160 21 6 2.2479 -3.6651 0.2555 22 1 -0.4850 0.8366 -0.0773 23 1 -0.5495 -2.8796 -0.9211 24 1 3.0248 -3.7951 -1.9388 25 1 1.7080 -4.8998 -2.4015 26 1 2.8525 -3.1178 -4.6085 27 1 1.8722 -6.0892 -4.3922 28 1 2.3428 -5.2127 -5.9453 29 1 4.6751 -4.8325 -5.0233 30 1 4.2038 -5.7089 -3.4703 31 1 0.8228 -1.8057 2.1494 32 1 -0.6285 -2.2369 1.1916 33 1 -0.1918 -4.6007 1.3915 34 1 0.3123 -3.9986 3.0052 35 1 2.0722 -5.4181 1.5365 36 1 2.6373 -3.9422 2.3807 37 1 2.0886 -4.3789 -0.5527 38 1 3.2712 -3.2909 0.2269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189007261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:54 Heat of formation + Delta-G solvation = -49.593433 kcal Electronic energy + Delta-G solvation = -20804.202998 eV Core-core repulsion = 17774.501032 eV Total energy + Delta-G solvation = -3029.701966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.86681 -37.35271 -35.83388 -34.63331 -32.74635 -31.40890 -29.24255 -27.55731 -26.97543 -23.84030 -22.36246 -21.06296 -19.79743 -19.05482 -18.27829 -16.95123 -16.11869 -15.94557 -15.18147 -14.65291 -14.49185 -14.33823 -14.03344 -13.78080 -13.00138 -12.83948 -12.42417 -11.76306 -11.63872 -11.50273 -11.34947 -11.06764 -10.98389 -10.89026 -10.68497 -10.60574 -10.46616 -10.38598 -10.17072 -10.06633 -9.93728 -9.72497 -9.64371 -9.39429 -9.19621 -8.34842 -7.85168 -5.96285 -4.02218 1.37278 3.38707 3.49554 3.52330 3.78851 4.01667 4.54600 4.61011 4.86197 4.91912 5.11217 5.21162 5.31688 5.45670 5.56992 5.61719 5.63902 5.64543 5.73366 5.90234 6.03389 6.12763 6.21635 6.27467 6.33557 6.49931 6.53924 6.67989 6.69846 6.73513 7.06366 7.12643 7.41418 7.68499 8.00261 8.28466 8.53170 8.96294 9.66838 11.08685 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.008981 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.156466 B = 3117.114509 C = 3860.356985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.098 3.902 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.296 3.704 10 N -1.078 6.078 11 S 2.612 3.388 12 O -1.000 7.000 13 O -0.924 6.924 14 C -0.620 4.620 15 C -0.143 4.143 16 C -0.176 4.176 17 C -0.170 4.170 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.155 4.155 22 H 0.259 0.741 23 H 0.395 0.605 24 H 0.138 0.862 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -10.165 -1.876 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.109 4.109 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.210 3.790 10 N -0.836 5.836 11 S 2.703 3.297 12 O -0.990 6.990 13 O -0.913 6.913 14 C -0.744 4.744 15 C -0.162 4.162 16 C -0.213 4.213 17 C -0.207 4.207 18 C -0.124 4.124 19 C -0.173 4.173 20 C -0.153 4.153 21 C -0.194 4.194 22 H 0.069 0.931 23 H 0.227 0.773 24 H 0.157 0.843 25 H 0.137 0.863 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.606 -9.414 -2.524 10.392 hybrid contribution 0.371 0.240 0.266 0.516 sum 3.977 -9.174 -2.258 10.251 Atomic orbital electron populations 1.69959 1.06054 1.26817 1.47672 1.24794 0.94564 0.99014 0.92517 0.86545 0.80558 0.83909 0.76891 1.19706 1.21067 1.21524 1.21331 0.93202 0.89669 1.51459 0.91846 1.18394 0.86172 0.91329 0.83075 1.55953 1.18085 1.87658 1.21869 1.05231 0.74970 0.76047 0.73499 1.93465 1.51119 1.87342 1.67111 1.93633 1.76205 1.35813 1.85687 1.30853 1.18891 1.22961 1.01709 1.21677 1.04622 0.95328 0.94579 1.23079 0.98977 0.99274 0.99952 1.22955 0.91943 1.02467 1.03373 1.22348 1.00766 0.92348 0.96971 1.22678 0.95954 0.99385 0.99248 1.22238 0.97163 0.98189 0.97759 1.23226 1.01166 0.98319 0.96695 0.93079 0.77306 0.84348 0.86347 0.87258 0.88498 0.88433 0.88594 0.88547 0.91564 0.91448 0.92770 0.93157 0.93461 0.92176 0.92643 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.65 11.81 55.43 0.65 -22.99 16 2 C 0.10 2.62 4.62 -17.82 -0.08 2.54 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -13.11 5.69 -34.44 -0.20 -13.31 16 8 H 0.06 1.63 7.35 -52.49 -0.39 1.25 16 9 C 0.30 6.38 0.61 -131.85 -0.08 6.30 16 10 N -1.08 -22.99 4.89 0.51 0.00 -22.99 16 11 S 2.61 55.44 5.36 -107.50 -0.58 54.86 16 12 O -1.00 -23.26 18.08 -57.54 -1.04 -24.30 16 13 O -0.92 -23.37 15.15 -57.54 -0.87 -24.24 16 14 C -0.62 -10.04 4.46 37.16 0.17 -9.87 16 15 C -0.14 -2.13 5.75 -90.62 -0.52 -2.65 16 16 C -0.18 -2.19 10.18 -26.73 -0.27 -2.46 16 17 C -0.17 -2.02 10.25 -26.73 -0.27 -2.30 16 18 C -0.08 -1.74 4.88 -25.04 -0.12 -1.87 16 19 C -0.13 -2.25 6.91 -24.70 -0.17 -2.42 16 20 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 21 C -0.15 -2.79 4.64 -25.62 -0.12 -2.91 16 22 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 23 H 0.39 8.12 8.38 -34.48 -0.29 7.83 16 24 H 0.14 2.19 6.11 -51.92 -0.32 1.87 16 25 H 0.12 1.67 7.39 -51.93 -0.38 1.29 16 26 H 0.11 1.64 8.06 -51.93 -0.42 1.23 16 27 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.47 7.84 -51.93 -0.41 1.07 16 32 H 0.07 1.48 7.52 -51.93 -0.39 1.09 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.89 4.62 -51.93 -0.24 0.65 16 38 H 0.07 1.21 7.32 -51.93 -0.38 0.83 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -31.02 308.89 -9.76 -40.79 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.72 Total: 8.23 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -1.84 Total: -30.95 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.66 Total: -45.99 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.91 Total: -48.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 55.44 SS G_CDS: -0.58 Total: 54.86 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.02 -9.76 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189007261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.807 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds