Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00295 * 2 1 4 4 H 1.48497 * 109.46978 * 184.72887 * 3 2 1 5 5 H 1.48499 * 109.47039 * 304.72785 * 3 2 1 6 6 H 1.48500 * 109.47093 * 64.73023 * 3 2 1 7 7 C 1.37880 * 119.99597 * 179.72125 * 2 1 3 8 8 H 1.08001 * 119.99710 * 174.84686 * 7 2 1 9 9 C 1.50705 * 119.99973 * 354.85059 * 7 2 1 10 10 N 1.46503 * 110.01651 * 64.35341 * 9 7 2 11 11 S 1.65604 * 120.00031 * 53.00791 * 10 9 7 12 12 O 1.42104 * 104.27378 * 179.97438 * 11 10 9 13 13 O 1.42097 * 104.27829 * 307.82482 * 11 10 9 14 14 C 1.81396 * 104.44846 * 63.90066 * 11 10 9 15 15 C 1.52999 * 109.47131 * 175.07479 * 14 11 10 16 16 C 1.52996 * 117.49975 * 244.11453 * 15 14 11 17 17 C 1.53001 * 117.49749 * 175.48853 * 15 14 11 18 18 C 1.54262 * 110.03121 * 302.96123 * 9 7 2 19 19 C 1.54960 * 104.15818 * 217.13821 * 18 9 7 20 20 C 1.54893 * 102.77897 * 37.88719 * 19 18 9 21 21 C 1.53871 * 110.02881 * 185.74304 * 9 7 2 22 22 H 0.97007 * 119.99625 * 5.28038 * 1 2 3 23 23 H 0.97003 * 119.99425 * 233.00897 * 10 9 7 24 24 H 1.09003 * 109.46843 * 295.07558 * 14 11 10 25 25 H 1.08997 * 109.47290 * 55.07631 * 14 11 10 26 26 H 1.09000 * 115.54857 * 29.82598 * 15 14 11 27 27 H 1.08998 * 117.50143 * 359.97438 * 16 15 14 28 28 H 1.08997 * 117.49742 * 145.01912 * 16 15 14 29 29 H 1.08999 * 117.50190 * 214.97605 * 17 15 14 30 30 H 1.08999 * 117.50044 * 0.02562 * 17 15 14 31 31 H 1.08995 * 110.48712 * 335.78437 * 18 9 7 32 32 H 1.09002 * 110.49000 * 98.42727 * 18 9 7 33 33 H 1.08997 * 110.72119 * 279.57135 * 19 18 9 34 34 H 1.09006 * 110.76685 * 156.22303 * 19 18 9 35 35 H 1.08998 * 110.48330 * 203.40136 * 20 19 18 36 36 H 1.09004 * 110.48146 * 80.76083 * 20 19 18 37 37 H 1.08998 * 110.03208 * 238.56686 * 21 9 7 38 38 H 1.08994 * 110.03485 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7051 1.3486 -0.1154 5 1 1.8060 2.4452 -1.1507 6 1 1.9792 2.3452 1.2661 7 6 2.0045 -1.1941 0.0058 8 1 3.0812 -1.1964 -0.0782 9 6 1.2554 -2.4960 0.1293 10 7 0.3948 -2.6922 -1.0400 11 16 1.0341 -2.5941 -2.5645 12 8 -0.0716 -2.8341 -3.4242 13 8 1.7163 -1.3477 -2.5789 14 6 2.2160 -3.9677 -2.6489 15 6 2.7904 -4.0600 -4.0639 16 6 2.4832 -5.3235 -4.8701 17 6 3.8900 -5.0941 -4.3139 18 6 0.4058 -2.4967 1.4169 19 6 0.5001 -3.9550 1.9323 20 6 1.9677 -4.3361 1.6160 21 6 2.2479 -3.6651 0.2555 22 1 -0.4850 0.8366 -0.0773 23 1 -0.5495 -2.8796 -0.9211 24 1 3.0248 -3.7951 -1.9388 25 1 1.7080 -4.8998 -2.4015 26 1 2.8525 -3.1178 -4.6085 27 1 1.8722 -6.0892 -4.3922 28 1 2.3428 -5.2127 -5.9453 29 1 4.6751 -4.8325 -5.0233 30 1 4.2038 -5.7089 -3.4703 31 1 0.8228 -1.8057 2.1494 32 1 -0.6285 -2.2369 1.1916 33 1 -0.1918 -4.6007 1.3915 34 1 0.3123 -3.9986 3.0052 35 1 2.0722 -5.4181 1.5365 36 1 2.6373 -3.9422 2.3807 37 1 2.0886 -4.3789 -0.5527 38 1 3.2712 -3.2909 0.2269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189007261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -71.041523 kcal Electronic energy + Delta-G solvation = -20805.133057 eV Core-core repulsion = 17774.501032 eV Total energy + Delta-G solvation = -3030.632025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42036 -38.41160 -37.61935 -36.45331 -34.49909 -33.18048 -30.58409 -29.01631 -28.68539 -25.61342 -23.25925 -22.25360 -21.23021 -20.59820 -19.98470 -18.70070 -17.72952 -17.49233 -16.81418 -16.44002 -15.91141 -15.81569 -15.45235 -15.12028 -14.73680 -14.19784 -13.88158 -13.46314 -13.13700 -12.95191 -12.88041 -12.74349 -12.62580 -12.45697 -12.35268 -12.33237 -12.06802 -11.89997 -11.64518 -11.49294 -11.32864 -11.13495 -11.08759 -10.97480 -10.76613 -10.32689 -9.56713 -7.98170 -6.05149 -0.26481 1.37484 1.45109 1.50629 2.36335 2.53913 2.78474 3.20758 3.38035 3.62437 3.69109 3.96845 4.08903 4.12374 4.20214 4.22679 4.34296 4.48866 4.63101 4.78686 4.84901 4.97150 5.00875 5.07505 5.13879 5.18138 5.23979 5.26328 5.27373 5.36919 5.47300 5.62996 5.76026 5.88134 6.11083 6.46601 6.79870 7.01418 7.65079 9.04423 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.008981 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.156466 B = 3117.114509 C = 3860.356985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.055 3.945 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.286 3.714 10 N -1.083 6.083 11 S 2.607 3.393 12 O -1.028 7.028 13 O -0.977 6.977 14 C -0.583 4.583 15 C -0.188 4.188 16 C -0.171 4.171 17 C -0.147 4.147 18 C -0.084 4.084 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.155 4.155 22 H 0.252 0.748 23 H 0.397 0.603 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -13.604 -1.840 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.147 4.147 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.201 3.799 10 N -0.840 5.840 11 S 2.703 3.297 12 O -1.018 7.018 13 O -0.967 6.967 14 C -0.714 4.714 15 C -0.207 4.207 16 C -0.208 4.208 17 C -0.185 4.185 18 C -0.124 4.124 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.194 4.194 22 H 0.061 0.939 23 H 0.229 0.771 24 H 0.166 0.834 25 H 0.168 0.832 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.962 -12.788 -2.449 13.934 hybrid contribution 0.008 1.235 0.150 1.244 sum 4.970 -11.554 -2.299 12.786 Atomic orbital electron populations 1.70034 1.06518 1.26366 1.50126 1.25277 0.95118 1.00901 0.93446 0.86111 0.80071 0.82405 0.76532 1.19336 1.22770 1.20480 1.21650 0.92971 0.91494 1.49809 0.92927 1.18493 0.86877 0.91327 0.83237 1.55582 1.18279 1.88191 1.21921 1.04794 0.75122 0.76797 0.72953 1.93424 1.52847 1.87942 1.67598 1.93575 1.76928 1.40165 1.86047 1.30398 1.16942 1.20462 1.03585 1.21780 1.08517 0.96454 0.93979 1.23282 0.99633 0.97345 1.00539 1.23121 0.91808 0.99770 1.03809 1.22214 0.98933 0.95009 0.96290 1.22610 0.97140 0.96152 1.00348 1.22237 0.96236 1.00061 0.96212 1.23172 0.99609 0.97410 0.99171 0.93887 0.77099 0.83441 0.83168 0.88493 0.87261 0.87285 0.86974 0.86967 0.94127 0.93681 0.91317 0.91485 0.90025 0.91996 0.90233 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.58 11.81 21.45 0.25 -50.33 16 2 C 0.06 3.06 4.62 84.65 0.39 3.45 16 3 Si 0.92 46.16 29.54 68.60 2.03 48.19 16 4 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.52 -26.84 5.69 25.60 0.15 -26.69 16 8 H 0.05 2.76 7.35 -2.91 -0.02 2.73 16 9 C 0.29 12.24 0.61 3.58 0.00 12.24 16 10 N -1.08 -46.06 4.89 -152.30 -0.75 -46.80 16 11 S 2.61 110.51 5.36 -56.49 -0.30 110.21 16 12 O -1.03 -48.10 18.08 -127.65 -2.31 -50.41 16 13 O -0.98 -50.91 15.15 -127.65 -1.93 -52.85 16 14 C -0.58 -17.20 4.46 71.98 0.32 -16.88 16 15 C -0.19 -5.08 5.75 -10.80 -0.06 -5.14 16 16 C -0.17 -3.59 10.18 30.59 0.31 -3.28 16 17 C -0.15 -2.86 10.25 30.60 0.31 -2.55 16 18 C -0.08 -3.48 4.88 31.69 0.15 -3.33 16 19 C -0.12 -3.81 6.91 31.91 0.22 -3.59 16 20 C -0.11 -3.07 6.83 31.67 0.22 -2.85 16 21 C -0.15 -5.13 4.64 31.32 0.15 -4.99 16 22 H 0.25 14.15 8.32 -92.70 -0.77 13.38 16 23 H 0.40 16.47 8.38 -96.74 -0.81 15.66 16 24 H 0.15 4.17 6.11 -2.39 -0.01 4.16 16 25 H 0.15 3.52 7.39 -2.39 -0.02 3.51 16 26 H 0.10 2.85 8.06 -2.39 -0.02 2.83 16 27 H 0.11 2.03 8.03 -2.39 -0.02 2.01 16 28 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.84 7.84 -2.39 -0.02 1.82 16 32 H 0.04 2.02 7.52 -2.39 -0.02 2.00 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 2.21 4.62 -2.39 -0.01 2.20 16 38 H 0.06 2.13 7.32 -2.39 -0.02 2.11 16 Total: -1.00 -69.83 308.89 -0.60 -70.44 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.25 Total: 25.14 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 2.16 Total: -53.59 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -0.49 Total: -97.13 kcal Atomic # 8 Polarization: -99.01 SS G_CDS: -4.24 Total: -103.25 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 110.51 SS G_CDS: -0.30 Total: 110.21 kcal Total: -69.83 -0.60 -70.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189007261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.604 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds