Wall clock time and date at job start Mon Mar 30 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41379 * 126.80739 * 2 1 4 4 C 1.35450 * 103.99123 * 180.09278 * 3 2 1 5 5 C 1.50695 * 126.78012 * 179.91046 * 4 3 2 6 6 O 1.42905 * 109.47098 * 89.71281 * 5 4 3 7 7 C 1.42905 * 113.99667 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47319 * 329.99653 * 7 6 5 9 9 C 1.50702 * 109.47397 * 90.00100 * 7 6 5 10 10 H 1.07999 * 119.99759 * 32.31089 * 9 7 6 11 11 C 1.37872 * 119.99687 * 212.31218 * 9 7 6 12 12 N 1.31508 * 120.00421 * 3.01570 * 11 9 7 13 13 Si 1.86803 * 119.99777 * 183.28586 * 11 9 7 14 14 H 1.48501 * 109.47350 * 179.72198 * 13 11 9 15 15 H 1.48494 * 109.47222 * 299.72998 * 13 11 9 16 16 H 1.48507 * 109.46837 * 59.72599 * 13 11 9 17 17 C 1.50698 * 109.46499 * 209.99629 * 7 6 5 18 18 C 1.38233 * 120.00484 * 322.41351 * 17 7 6 19 19 C 1.38236 * 120.00115 * 179.78943 * 18 17 7 20 20 C 1.38237 * 120.00042 * 0.43492 * 19 18 17 21 21 C 1.38230 * 119.99662 * 359.81934 * 20 19 18 22 22 C 1.38230 * 120.00457 * 359.97201 * 21 20 19 23 23 O 1.34038 * 106.44444 * 359.64851 * 4 3 2 24 24 N 1.20926 * 111.56734 * 0.24090 * 23 4 3 25 25 H 1.08994 * 109.46654 * 270.28899 * 1 2 3 26 26 H 1.09004 * 109.46653 * 30.29215 * 1 2 3 27 27 H 1.09000 * 109.46857 * 150.29049 * 1 2 3 28 28 H 1.08006 * 128.00602 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47261 * 329.71326 * 5 4 3 30 30 H 1.09003 * 109.47622 * 209.71405 * 5 4 3 31 31 H 0.97001 * 119.99604 * 355.08086 * 12 11 9 32 32 H 1.08000 * 119.99576 * 359.97438 * 18 17 7 33 33 H 1.08000 * 119.99839 * 180.27856 * 19 18 17 34 34 H 1.07996 * 119.99943 * 179.83620 * 20 19 18 35 35 H 1.08005 * 120.00144 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.00501 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6026 0.6067 -0.0021 5 6 4.9023 1.3694 -0.0050 6 8 5.3122 1.6169 1.3415 7 6 6.5406 2.3389 1.4515 8 1 7.1742 2.1109 0.5945 9 6 6.2528 3.8179 1.4841 10 1 5.3414 4.1808 1.9357 11 6 7.1531 4.7075 0.9374 12 7 8.2341 4.2624 0.3351 13 14 6.8412 6.5453 1.0590 14 1 7.9526 7.2804 0.4034 15 1 5.5616 6.8760 0.3821 16 1 6.7616 6.9403 2.4883 17 6 7.2475 1.9367 2.7201 18 6 6.5190 1.6867 3.8680 19 6 7.1673 1.3135 5.0305 20 6 8.5448 1.1990 5.0476 21 6 9.2737 1.4541 3.9011 22 6 8.6252 1.8231 2.7374 23 8 3.4538 -0.7254 0.0047 24 7 2.2868 -1.0423 0.0057 25 1 -0.3632 0.0052 1.0276 26 1 -0.3633 0.8874 -0.5184 27 1 -0.3633 -0.8926 -0.5093 28 1 2.0711 2.1743 0.0004 29 1 4.7656 2.3184 -0.5234 30 1 5.6664 0.7833 -0.5155 31 1 8.4347 3.3134 0.3373 32 1 5.4432 1.7801 3.8558 33 1 6.5977 1.1139 5.9261 34 1 9.0514 0.9100 5.9565 35 1 10.3500 1.3650 3.9144 36 1 9.1946 2.0220 1.8415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222442632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:05 Heat of formation + Delta-G solvation = 33.252856 kcal Electronic energy + Delta-G solvation = -20280.918285 eV Core-core repulsion = 17119.364852 eV Total energy + Delta-G solvation = -3161.553433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.68350 -38.68539 -36.93037 -34.62333 -33.55832 -32.10237 -30.51550 -30.13301 -28.61337 -26.79477 -25.63215 -23.20454 -22.82439 -21.75449 -20.50395 -19.94669 -17.55165 -17.21724 -17.07697 -16.23370 -15.55559 -14.94588 -14.54255 -14.23791 -13.87481 -13.66723 -13.49401 -13.37456 -12.98491 -12.87712 -12.70615 -12.51910 -12.07027 -12.01926 -11.46276 -11.09047 -10.94325 -10.65131 -10.39231 -10.26192 -9.88061 -9.85564 -9.77611 -9.25395 -8.71837 -8.49472 -8.18825 -7.74554 -6.60261 -4.37232 1.60890 2.13723 2.16409 2.37903 3.27888 3.32281 3.35750 3.53145 4.30606 4.32453 4.45490 4.61508 4.89224 5.12654 5.27829 5.39921 5.41558 5.44291 5.55410 5.61414 5.69351 5.73875 5.81543 5.97209 6.05945 6.09619 6.24744 6.28241 6.33495 6.58455 6.77688 6.80552 7.17327 7.25469 7.44047 7.71006 7.81140 7.89775 8.38358 8.43926 8.56810 9.34897 10.73740 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.005909 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.500539 B = 4737.125343 C = 6090.792379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 C -0.219 4.219 4 C -0.008 4.008 5 C 0.151 3.849 6 O -0.387 6.387 7 C 0.229 3.771 8 H 0.039 0.961 9 C -0.605 4.605 10 H 0.062 0.938 11 C 0.029 3.971 12 N -0.897 5.897 13 Si 1.069 2.931 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.036 4.036 18 C -0.104 4.104 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.124 4.124 22 C -0.118 4.118 23 O 0.099 5.901 24 N -0.372 5.372 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.172 0.828 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 -4.954 0.892 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.150 4.150 3 C -0.241 4.241 4 C -0.072 4.072 5 C 0.073 3.927 6 O -0.307 6.307 7 C 0.173 3.827 8 H 0.056 0.944 9 C -0.643 4.643 10 H 0.080 0.920 11 C -0.177 4.177 12 N -0.533 5.533 13 Si 0.896 3.104 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.037 4.037 18 C -0.122 4.122 19 C -0.148 4.148 20 C -0.166 4.166 21 C -0.142 4.142 22 C -0.137 4.137 23 O 0.033 5.967 24 N -0.078 5.078 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.190 0.810 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.771 -4.855 0.587 8.353 hybrid contribution -0.470 -0.419 0.457 0.778 sum -7.241 -5.274 1.044 9.019 Atomic orbital electron populations 1.20122 0.86147 1.03460 1.03208 1.23581 0.98886 0.89091 1.03411 1.22461 0.91100 1.01169 1.09365 1.24491 0.98372 0.83076 1.01227 1.20450 0.87969 0.96572 0.87704 1.87796 1.43348 1.77035 1.22495 1.18926 0.81272 0.91245 0.91261 0.94362 1.22268 1.08591 0.90377 1.43022 0.91991 1.25924 0.93173 1.06545 0.92027 1.70876 1.26046 1.17531 1.38803 0.83539 0.76084 0.74084 0.76722 1.20526 1.21159 1.21106 1.20342 0.93344 0.93027 0.96959 1.20883 0.99907 0.99201 0.92193 1.21017 0.94516 1.01522 0.97733 1.20871 0.94246 1.03704 0.97778 1.20949 0.98975 1.01012 0.93310 1.20945 0.94164 1.00282 0.98295 1.84795 1.21352 1.23231 1.67341 1.73807 0.89504 1.24352 1.20102 0.90340 0.90104 0.90825 0.81023 0.89390 0.92202 0.91826 0.86510 0.87247 0.87324 0.87069 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.47 36.01 0.38 -0.36 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.22 -3.38 11.06 -39.38 -0.44 -3.82 16 4 C -0.01 -0.14 7.12 -35.31 -0.25 -0.39 16 5 C 0.15 2.80 6.30 36.00 0.23 3.03 16 6 O -0.39 -8.56 9.19 -35.23 -0.32 -8.89 16 7 C 0.23 5.44 2.22 -29.03 -0.06 5.38 16 8 H 0.04 0.95 5.89 -51.93 -0.31 0.64 16 9 C -0.61 -15.75 8.62 -34.44 -0.30 -16.05 16 10 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 11 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 12 N -0.90 -24.55 13.62 55.43 0.75 -23.80 16 13 Si 1.07 23.64 29.90 -169.99 -5.08 18.55 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.04 -0.82 4.97 -104.62 -0.52 -1.34 16 18 C -0.10 -2.19 9.36 -39.58 -0.37 -2.57 16 19 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 20 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 21 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 22 C -0.12 -2.53 9.60 -39.58 -0.38 -2.91 16 23 O 0.10 1.76 11.20 17.18 0.19 1.95 16 24 N -0.37 -6.35 12.07 33.43 0.40 -5.95 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.27 7.22 5.43 -40.82 -0.22 7.00 16 32 H 0.12 2.48 7.71 -52.49 -0.40 2.07 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.12 2.52 7.04 -52.48 -0.37 2.15 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -29.29 316.70 -7.20 -36.49 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.31 Total: 4.12 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -3.61 Total: -27.26 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 1.16 Total: -29.75 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.13 Total: -6.93 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.08 Total: 18.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.29 -7.20 -36.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222442632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.747 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds