Wall clock time and date at job start Mon Mar 30 2020 01:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35447 * 126.77970 * 2 1 4 4 C 1.41381 * 103.98617 * 180.10342 * 3 2 1 5 5 C 1.50696 * 126.80424 * 179.89288 * 4 3 2 6 6 O 1.42905 * 109.47061 * 359.70410 * 5 4 3 7 7 C 1.42901 * 113.99940 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47151 * 329.99691 * 7 6 5 9 9 C 1.50701 * 109.47191 * 90.00035 * 7 6 5 10 10 H 1.07997 * 119.99870 * 32.31377 * 9 7 6 11 11 C 1.37876 * 119.99712 * 212.31253 * 9 7 6 12 12 N 1.31517 * 120.00222 * 3.01229 * 11 9 7 13 13 Si 1.86802 * 119.99647 * 183.29327 * 11 9 7 14 14 H 1.48508 * 109.46956 * 179.72504 * 13 11 9 15 15 H 1.48503 * 109.47123 * 299.72069 * 13 11 9 16 16 H 1.48501 * 109.47544 * 59.72230 * 13 11 9 17 17 C 1.50703 * 109.46679 * 209.99831 * 7 6 5 18 18 C 1.38230 * 120.00485 * 322.41319 * 17 7 6 19 19 C 1.38233 * 120.00301 * 179.78783 * 18 17 7 20 20 C 1.38237 * 120.00041 * 0.44081 * 19 18 17 21 21 C 1.38236 * 119.99545 * 359.80844 * 20 19 18 22 22 C 1.38235 * 120.00337 * 359.97438 * 21 20 19 23 23 N 1.30177 * 106.39493 * 359.62256 * 4 3 2 24 24 O 1.20922 * 111.60543 * 0.24558 * 23 4 3 25 25 H 1.08995 * 109.47383 * 180.30133 * 1 2 3 26 26 H 1.09009 * 109.46770 * 300.29872 * 1 2 3 27 27 H 1.08999 * 109.47255 * 60.29230 * 1 2 3 28 28 H 1.07998 * 128.00701 * 359.96691 * 3 2 1 29 29 H 1.09003 * 109.47442 * 239.70639 * 5 4 3 30 30 H 1.08996 * 109.47968 * 119.70420 * 5 4 3 31 31 H 0.96999 * 119.99708 * 355.08929 * 12 11 9 32 32 H 1.08005 * 119.99876 * 359.97438 * 18 17 7 33 33 H 1.07995 * 120.00039 * 180.26941 * 19 18 17 34 34 H 1.07998 * 120.00306 * 179.83009 * 20 19 18 35 35 H 1.08004 * 120.00132 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.00252 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 -0.0025 5 6 4.9211 1.2998 -0.0058 6 8 4.6501 2.7029 -0.0131 7 6 5.8217 3.5211 -0.0173 8 1 6.6291 3.0022 0.4993 9 6 6.2335 3.8014 -1.4396 10 1 5.4838 3.8836 -2.2126 11 6 7.5674 3.9528 -1.7539 12 7 8.4842 3.7941 -0.8243 13 14 8.0720 4.3911 -3.4982 14 1 9.5510 4.5018 -3.5727 15 1 7.6074 3.3314 -4.4290 16 1 7.4587 5.6887 -3.8798 17 6 5.5288 4.8212 0.6864 18 6 4.2955 5.4267 0.5348 19 6 4.0254 6.6169 1.1838 20 6 4.9918 7.2064 1.9771 21 6 6.2270 6.6035 2.1246 22 6 6.4955 5.4109 1.4792 23 7 3.4763 -0.7565 0.0046 24 8 2.3094 -1.0737 0.0060 25 1 -0.3634 -1.0276 0.0054 26 1 -0.3633 0.5185 0.8874 27 1 -0.3634 0.5093 -0.8926 28 1 2.0346 2.1270 -0.0005 29 1 5.4950 1.0360 -0.8942 30 1 5.4942 1.0451 0.8857 31 1 8.2199 3.6411 0.0963 32 1 3.5418 4.9682 -0.0883 33 1 3.0602 7.0877 1.0688 34 1 4.7818 8.1378 2.4819 35 1 6.9820 7.0638 2.7447 36 1 7.4607 4.9401 1.5941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222977839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:31 Heat of formation + Delta-G solvation = 33.609107 kcal Electronic energy + Delta-G solvation = -20317.984832 eV Core-core repulsion = 17156.446847 eV Total energy + Delta-G solvation = -3161.537984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.67906 -38.68556 -36.94780 -34.18955 -33.33270 -32.87794 -30.64492 -30.15102 -27.70933 -27.14676 -25.82293 -23.26452 -22.58531 -21.73777 -20.52834 -19.86583 -17.49000 -17.27907 -17.01170 -16.24619 -15.51005 -14.88673 -14.46312 -14.18580 -13.84952 -13.75412 -13.55193 -13.36478 -13.32939 -12.85405 -12.58967 -12.41756 -12.06641 -11.97229 -11.51102 -10.98023 -10.91481 -10.67302 -10.40772 -10.25404 -10.13684 -9.80609 -9.47237 -9.11585 -8.67796 -8.44196 -8.20293 -7.73750 -6.57127 -4.33589 1.65809 2.12293 2.15122 2.51600 3.29300 3.35667 3.37224 3.55550 3.97792 4.36440 4.59212 4.65714 5.07963 5.15771 5.21882 5.30735 5.43584 5.52223 5.53756 5.59816 5.71543 5.84030 5.88045 5.93434 6.09920 6.14913 6.27375 6.33804 6.34215 6.60944 6.78483 6.79933 7.15873 7.25168 7.45265 7.72058 7.82424 7.94601 8.42337 8.51617 8.60155 9.38467 10.77000 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.005996 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.137115 B = 4668.336158 C = 6023.620574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.054 4.054 3 C -0.202 4.202 4 C 0.033 3.967 5 C 0.152 3.848 6 O -0.387 6.387 7 C 0.230 3.770 8 H 0.037 0.963 9 C -0.604 4.604 10 H 0.061 0.939 11 C 0.029 3.971 12 N -0.898 5.898 13 Si 1.069 2.931 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.034 4.034 18 C -0.104 4.104 19 C -0.130 4.130 20 C -0.149 4.149 21 C -0.124 4.124 22 C -0.119 4.119 23 N -0.370 5.370 24 O 0.094 5.906 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.173 0.827 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.269 0.731 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.181 -1.634 3.694 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C -0.223 4.223 4 C -0.125 4.125 5 C 0.074 3.926 6 O -0.307 6.307 7 C 0.174 3.826 8 H 0.054 0.946 9 C -0.642 4.642 10 H 0.080 0.920 11 C -0.177 4.177 12 N -0.533 5.533 13 Si 0.896 3.104 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.035 4.035 18 C -0.123 4.123 19 C -0.148 4.148 20 C -0.167 4.167 21 C -0.142 4.142 22 C -0.138 4.138 23 N -0.077 5.077 24 O 0.028 5.972 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.191 0.809 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.175 -2.338 2.727 10.790 hybrid contribution -1.308 0.659 0.899 1.719 sum -11.483 -1.680 3.626 12.158 Atomic orbital electron populations 1.20258 0.84271 1.04155 1.03904 1.24466 0.96241 0.86404 1.04607 1.22372 0.90960 1.01095 1.07871 1.23547 0.97889 0.89722 1.01310 1.20084 0.88598 0.82608 1.01275 1.87656 1.34242 1.13316 1.95454 1.18888 0.83022 0.84950 0.95773 0.94577 1.22265 0.95208 1.53920 0.92766 0.92035 1.25929 0.92514 0.93120 1.06166 1.70876 1.35888 1.43703 1.02869 0.83541 0.76395 0.76766 0.73724 1.20510 1.21183 1.21085 1.20359 0.92932 0.98177 0.92052 1.20868 0.97154 0.94926 0.99310 1.21009 0.98750 0.96340 0.98701 1.20867 0.94427 1.00052 1.01336 1.20952 0.96732 0.96023 1.00497 1.20956 0.99171 0.96331 0.97295 1.73747 0.96882 1.15890 1.21171 1.84787 1.11222 1.33135 1.68089 0.90246 0.89460 0.89414 0.80949 0.90777 0.92457 0.91883 0.86472 0.87244 0.87344 0.87101 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 36.01 0.38 -0.17 16 2 C -0.05 -0.72 7.49 -35.30 -0.26 -0.98 16 3 C -0.20 -3.23 10.45 -39.38 -0.41 -3.64 16 4 C 0.03 0.63 7.28 -82.10 -0.60 0.03 16 5 C 0.15 3.14 6.36 36.00 0.23 3.37 16 6 O -0.39 -8.71 8.71 -35.23 -0.31 -9.01 16 7 C 0.23 5.61 2.22 -29.03 -0.06 5.54 16 8 H 0.04 0.93 5.89 -51.93 -0.31 0.63 16 9 C -0.60 -16.26 8.62 -34.44 -0.30 -16.56 16 10 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 12 N -0.90 -25.36 13.62 55.43 0.75 -24.61 16 13 Si 1.07 24.47 29.90 -169.99 -5.08 19.39 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.03 -0.79 4.97 -104.62 -0.52 -1.31 16 18 C -0.10 -2.16 9.35 -39.59 -0.37 -2.53 16 19 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 20 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 21 C -0.12 -2.29 10.05 -39.58 -0.40 -2.69 16 22 C -0.12 -2.56 9.60 -39.58 -0.38 -2.94 16 23 N -0.37 -6.77 12.07 33.42 0.40 -6.37 16 24 O 0.09 1.47 11.20 17.16 0.19 1.66 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.17 2.60 8.05 -52.49 -0.42 2.18 16 29 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.27 7.45 5.43 -40.82 -0.22 7.23 16 32 H 0.12 2.37 7.71 -52.48 -0.40 1.97 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.12 2.55 7.04 -52.48 -0.37 2.18 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -30.25 315.96 -7.18 -37.42 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.31 Total: 3.60 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -3.59 Total: -26.85 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 1.16 Total: -30.98 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.11 Total: -7.35 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.25 -7.18 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222977839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.032 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds