Wall clock time and date at job start Mon Mar 30 2020 01:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35447 * 126.77970 * 2 1 4 4 C 1.41381 * 103.98617 * 180.10342 * 3 2 1 5 5 C 1.50696 * 126.80424 * 179.89288 * 4 3 2 6 6 O 1.42905 * 109.47061 * 359.70410 * 5 4 3 7 7 C 1.42901 * 113.99940 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47151 * 329.99691 * 7 6 5 9 9 C 1.50701 * 109.47191 * 90.00035 * 7 6 5 10 10 H 1.07997 * 119.99870 * 32.31377 * 9 7 6 11 11 C 1.37876 * 119.99712 * 212.31253 * 9 7 6 12 12 N 1.31517 * 120.00222 * 3.01229 * 11 9 7 13 13 Si 1.86802 * 119.99647 * 183.29327 * 11 9 7 14 14 H 1.48508 * 109.46956 * 179.72504 * 13 11 9 15 15 H 1.48503 * 109.47123 * 299.72069 * 13 11 9 16 16 H 1.48501 * 109.47544 * 59.72230 * 13 11 9 17 17 C 1.50703 * 109.46679 * 209.99831 * 7 6 5 18 18 C 1.38230 * 120.00485 * 322.41319 * 17 7 6 19 19 C 1.38233 * 120.00301 * 179.78783 * 18 17 7 20 20 C 1.38237 * 120.00041 * 0.44081 * 19 18 17 21 21 C 1.38236 * 119.99545 * 359.80844 * 20 19 18 22 22 C 1.38235 * 120.00337 * 359.97438 * 21 20 19 23 23 N 1.30177 * 106.39493 * 359.62256 * 4 3 2 24 24 O 1.20922 * 111.60543 * 0.24558 * 23 4 3 25 25 H 1.08995 * 109.47383 * 180.30133 * 1 2 3 26 26 H 1.09009 * 109.46770 * 300.29872 * 1 2 3 27 27 H 1.08999 * 109.47255 * 60.29230 * 1 2 3 28 28 H 1.07998 * 128.00701 * 359.96691 * 3 2 1 29 29 H 1.09003 * 109.47442 * 239.70639 * 5 4 3 30 30 H 1.08996 * 109.47968 * 119.70420 * 5 4 3 31 31 H 0.96999 * 119.99708 * 355.08929 * 12 11 9 32 32 H 1.08005 * 119.99876 * 359.97438 * 18 17 7 33 33 H 1.07995 * 120.00039 * 180.26941 * 19 18 17 34 34 H 1.07998 * 120.00306 * 179.83009 * 20 19 18 35 35 H 1.08004 * 120.00132 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.00252 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 -0.0025 5 6 4.9211 1.2998 -0.0058 6 8 4.6501 2.7029 -0.0131 7 6 5.8217 3.5211 -0.0173 8 1 6.6291 3.0022 0.4993 9 6 6.2335 3.8014 -1.4396 10 1 5.4838 3.8836 -2.2126 11 6 7.5674 3.9528 -1.7539 12 7 8.4842 3.7941 -0.8243 13 14 8.0720 4.3911 -3.4982 14 1 9.5510 4.5018 -3.5727 15 1 7.6074 3.3314 -4.4290 16 1 7.4587 5.6887 -3.8798 17 6 5.5288 4.8212 0.6864 18 6 4.2955 5.4267 0.5348 19 6 4.0254 6.6169 1.1838 20 6 4.9918 7.2064 1.9771 21 6 6.2270 6.6035 2.1246 22 6 6.4955 5.4109 1.4792 23 7 3.4763 -0.7565 0.0046 24 8 2.3094 -1.0737 0.0060 25 1 -0.3634 -1.0276 0.0054 26 1 -0.3633 0.5185 0.8874 27 1 -0.3634 0.5093 -0.8926 28 1 2.0346 2.1270 -0.0005 29 1 5.4950 1.0360 -0.8942 30 1 5.4942 1.0451 0.8857 31 1 8.2199 3.6411 0.0963 32 1 3.5418 4.9682 -0.0883 33 1 3.0602 7.0877 1.0688 34 1 4.7818 8.1378 2.4819 35 1 6.9820 7.0638 2.7447 36 1 7.4607 4.9401 1.5941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222977839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:31 Heat of formation + Delta-G solvation = 16.933380 kcal Electronic energy + Delta-G solvation = -20318.707945 eV Core-core repulsion = 17156.446847 eV Total energy + Delta-G solvation = -3162.261098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.02017 -40.31499 -38.64530 -35.76648 -34.84738 -34.26805 -32.29884 -31.66975 -28.90660 -28.55288 -27.69238 -25.10899 -23.98449 -23.25538 -22.17271 -21.19911 -19.27843 -18.79741 -18.35398 -17.78608 -17.24399 -16.42313 -16.26010 -15.68526 -15.54695 -15.28433 -14.91464 -14.69310 -14.47163 -14.12706 -13.95010 -13.80034 -13.64851 -13.27245 -13.11071 -12.72851 -12.41962 -12.15820 -12.01987 -11.95486 -11.88779 -11.59343 -11.06874 -10.68565 -10.35012 -10.23132 -9.72261 -9.42820 -8.71168 -6.49226 0.45744 0.58991 0.61944 1.14533 1.48019 1.54593 1.74502 2.17949 2.38172 2.49735 2.99004 3.13492 3.42395 3.68135 4.05298 4.08773 4.19393 4.20991 4.27997 4.30757 4.37856 4.42430 4.51131 4.63656 4.76278 4.81778 4.86349 4.92871 4.96272 5.21031 5.26059 5.26757 5.66081 5.68421 5.74140 5.85652 5.92095 6.23786 6.42477 6.48162 7.23755 7.30611 8.62541 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.005996 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.137115 B = 4668.336158 C = 6023.620574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.023 4.023 3 C -0.225 4.225 4 C 0.005 3.995 5 C 0.156 3.844 6 O -0.385 6.385 7 C 0.234 3.766 8 H 0.010 0.990 9 C -0.616 4.616 10 H 0.048 0.952 11 C -0.015 4.015 12 N -0.921 5.921 13 Si 1.109 2.891 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.271 1.271 17 C -0.067 4.067 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.143 4.143 23 N -0.392 5.392 24 O 0.101 5.899 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.179 0.821 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.261 0.739 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -0.016 4.028 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.247 4.247 4 C -0.151 4.151 5 C 0.078 3.922 6 O -0.305 6.305 7 C 0.178 3.822 8 H 0.028 0.972 9 C -0.653 4.653 10 H 0.066 0.934 11 C -0.215 4.215 12 N -0.558 5.558 13 Si 0.931 3.069 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.196 1.196 17 C -0.067 4.067 18 C -0.138 4.138 19 C -0.139 4.139 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.161 4.161 23 N -0.098 5.098 24 O 0.034 5.966 25 H 0.120 0.880 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.196 0.804 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.950 -0.725 3.075 13.329 hybrid contribution -0.601 0.133 0.891 1.083 sum -13.551 -0.591 3.965 14.131 Atomic orbital electron populations 1.20608 0.79754 1.06297 1.05807 1.25353 0.98173 0.84493 1.00695 1.22482 0.90100 1.02230 1.09843 1.23368 0.98014 0.90291 1.03477 1.19935 0.90127 0.82063 1.00046 1.87628 1.33434 1.14061 1.95355 1.18719 0.82768 0.86031 0.94708 0.97248 1.22443 0.95132 1.53829 0.93890 0.93412 1.27173 0.92769 0.92616 1.08966 1.70949 1.36250 1.45695 1.02873 0.83033 0.76196 0.77463 0.70230 1.20390 1.19855 1.19606 1.20276 0.94759 0.97628 0.94074 1.20959 0.96183 0.96422 1.00237 1.21431 1.00585 0.94801 0.97079 1.21392 0.93055 1.00943 0.99930 1.21311 0.98360 0.94655 0.99797 1.20978 0.98298 0.98071 0.98757 1.73736 0.98373 1.15647 1.22021 1.84749 1.10716 1.33858 1.67305 0.88036 0.87259 0.87446 0.80398 0.93170 0.92777 0.92789 0.86935 0.83321 0.82809 0.84218 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.45 71.24 0.74 -0.07 16 2 C -0.02 -0.58 7.49 25.04 0.19 -0.39 16 3 C -0.22 -7.16 10.45 22.40 0.23 -6.92 16 4 C 0.01 0.21 7.28 43.58 0.32 0.52 16 5 C 0.16 6.95 6.36 71.23 0.45 7.40 16 6 O -0.39 -18.43 8.71 -148.98 -1.30 -19.72 16 7 C 0.23 12.17 2.22 29.10 0.06 12.24 16 8 H 0.01 0.55 5.89 -2.39 -0.01 0.53 16 9 C -0.62 -34.76 8.62 25.60 0.22 -34.54 16 10 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 11 C -0.01 -0.84 5.46 84.65 0.46 -0.38 16 12 N -0.92 -54.50 13.62 21.45 0.29 -54.20 16 13 Si 1.11 50.22 29.90 68.60 2.05 52.27 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 C -0.07 -3.15 4.97 -19.87 -0.10 -3.24 16 18 C -0.12 -4.91 9.35 22.27 0.21 -4.70 16 19 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 20 C -0.14 -4.10 10.05 22.27 0.22 -3.88 16 21 C -0.12 -4.32 10.05 22.27 0.22 -4.10 16 22 C -0.14 -6.28 9.60 22.27 0.21 -6.07 16 23 N -0.39 -14.64 12.07 -49.55 -0.60 -15.24 16 24 O 0.10 3.09 11.20 71.58 0.80 3.89 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.18 5.35 8.05 -2.91 -0.02 5.32 16 29 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 2.37 8.08 -2.39 -0.02 2.35 16 31 H 0.26 15.46 5.43 -92.71 -0.50 14.95 16 32 H 0.11 4.59 7.71 -2.91 -0.02 4.57 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 35 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.10 4.51 7.04 -2.91 -0.02 4.49 16 Total: -1.00 -69.72 315.96 6.28 -63.44 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.35 Total: 17.40 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 3.68 Total: -47.83 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.31 Total: -69.44 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.50 Total: -15.83 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -69.72 6.28 -63.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222977839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.377 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds