Wall clock time and date at job start Mon Mar 30 2020 00:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48501 * 109.46913 * 270.00383 * 3 2 1 5 5 H 1.48501 * 109.47074 * 29.99783 * 3 2 1 6 6 H 1.48495 * 109.46985 * 150.00132 * 3 2 1 7 7 C 1.38811 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64676 * 359.97433 * 9 7 2 11 11 C 1.54324 * 107.27156 * 178.99688 * 10 9 7 12 12 C 1.55160 * 102.94044 * 337.80513 * 11 10 9 13 13 H 1.09001 * 111.00651 * 277.39077 * 12 11 10 14 14 O 1.42904 * 111.00051 * 153.57667 * 12 11 10 15 15 C 1.35930 * 116.99560 * 156.20890 * 14 12 11 16 16 C 1.39211 * 119.71486 * 185.46775 * 15 14 12 17 17 C 1.36658 * 120.36085 * 180.02562 * 16 15 14 18 18 C 1.39432 * 119.79293 * 0.02562 * 17 16 15 19 19 C 1.46842 * 134.28922 * 179.67685 * 18 17 16 20 20 C 1.33953 * 106.19237 * 179.89423 * 19 18 17 21 21 O 1.34509 * 110.15379 * 0.40037 * 20 19 18 22 22 C 1.34818 * 110.88675 * 359.74053 * 21 20 19 23 23 C 1.38306 * 119.72206 * 5.49379 * 15 14 12 24 24 C 1.47470 * 125.62946 * 179.97438 * 9 7 2 25 25 H 0.97005 * 119.99465 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.88445 * 59.58156 * 10 9 7 27 27 H 1.08998 * 110.01212 * 298.48490 * 10 9 7 28 28 H 1.09006 * 110.72277 * 219.44418 * 11 10 9 29 29 H 1.08999 * 110.72369 * 96.17124 * 11 10 9 30 30 H 1.07999 * 119.81734 * 0.04841 * 16 15 14 31 31 H 1.08007 * 120.10537 * 179.97438 * 17 16 15 32 32 H 1.08006 * 126.90258 * 359.97438 * 19 18 17 33 33 H 1.07995 * 124.92177 * 180.17192 * 20 19 18 34 34 H 1.08005 * 120.11386 * 359.97438 * 23 15 14 35 35 H 1.09000 * 110.34693 * 85.23513 * 24 9 7 36 36 H 1.08995 * 110.40583 * 322.89608 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0257 12 6 0.8514 -4.6562 -0.6112 13 1 0.8553 -4.5972 -1.6996 14 8 1.0244 -6.0055 -0.1735 15 6 1.7925 -6.8130 -0.9518 16 6 1.9061 -8.1654 -0.6418 17 6 2.6751 -8.9890 -1.4149 18 6 3.3498 -8.4714 -2.5198 19 6 4.2411 -9.0429 -3.5373 20 6 4.5739 -8.0332 -4.3521 21 8 3.9891 -6.8938 -3.9409 22 6 3.2412 -7.1076 -2.8398 23 6 2.4549 -6.2839 -2.0446 24 6 1.9340 -3.7314 -0.0016 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5583 -2.0523 -0.8829 27 1 -0.5561 -2.0837 0.9012 28 1 -1.2991 -4.2516 -0.6751 29 1 -0.6311 -4.4178 0.9818 30 1 1.3833 -8.5658 0.2142 31 1 2.7607 -10.0376 -1.1703 32 1 4.5625 -10.0712 -3.6141 33 1 5.2212 -8.1204 -5.2122 34 1 2.3616 -5.2336 -2.2785 35 1 2.1685 -4.0420 1.0165 36 1 2.8325 -3.7411 -0.6186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228724789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:55 Heat of formation + Delta-G solvation = 26.132537 kcal Electronic energy + Delta-G solvation = -20331.880298 eV Core-core repulsion = 17170.018105 eV Total energy + Delta-G solvation = -3161.862193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.40094 -39.76537 -37.31725 -35.86104 -32.56152 -32.20768 -30.53940 -29.43896 -28.45846 -27.34936 -24.64530 -23.37980 -22.13543 -21.44226 -20.33326 -20.12052 -18.12954 -17.45459 -16.93635 -16.69704 -16.09615 -14.99152 -14.83578 -14.55215 -14.47168 -14.17888 -13.73972 -13.48518 -12.90634 -12.70494 -12.38866 -12.24307 -12.01295 -11.85265 -11.49074 -11.00655 -10.95868 -10.79031 -10.40749 -10.35069 -10.11854 -9.90240 -9.81064 -9.66462 -8.65031 -8.60554 -7.80165 -6.90740 -5.75905 -3.10572 0.95020 1.39320 2.33932 2.74869 3.37332 3.39563 3.44653 3.46869 3.71215 4.43408 4.47405 4.66003 5.02262 5.04522 5.14721 5.23209 5.27155 5.35315 5.47852 5.53748 5.57058 5.64889 5.73609 6.04012 6.17676 6.18294 6.27062 6.31950 6.40294 6.41387 6.51525 6.57664 6.67536 7.09427 7.49469 7.52625 7.61406 7.77261 8.19107 9.16246 9.75745 10.39963 11.35903 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025864 B = 0.004236 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.308855 B = 6608.874454 C = 7410.577180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.178 3.822 11 C -0.136 4.136 12 C 0.061 3.939 13 H 0.084 0.916 14 O -0.297 6.297 15 C 0.172 3.828 16 C -0.163 4.163 17 C -0.036 4.036 18 C -0.178 4.178 19 C -0.202 4.202 20 C -0.009 4.009 21 O -0.196 6.196 22 C 0.095 3.905 23 C -0.209 4.209 24 C 0.120 3.880 25 H 0.253 0.747 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.204 0.796 34 H 0.144 0.856 35 H 0.031 0.969 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -18.249 -5.608 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.174 4.174 12 C 0.004 3.996 13 H 0.101 0.899 14 O -0.209 6.209 15 C 0.125 3.875 16 C -0.181 4.181 17 C -0.054 4.054 18 C -0.179 4.179 19 C -0.221 4.221 20 C -0.073 4.073 21 O -0.097 6.097 22 C 0.047 3.953 23 C -0.228 4.228 24 C -0.007 4.007 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.221 0.779 34 H 0.161 0.839 35 H 0.049 0.951 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.468 -17.779 -5.531 19.148 hybrid contribution 0.613 0.839 -0.228 1.064 sum 5.080 -16.940 -5.759 18.599 Atomic orbital electron populations 1.69947 1.04912 1.25216 1.56874 1.24815 0.95759 0.97729 1.01960 0.86081 0.78608 0.83238 0.77616 1.21516 1.21577 1.20618 1.19068 0.90524 0.82126 1.44179 0.90280 1.44347 1.01665 0.99559 1.87447 1.21207 0.84430 0.87217 1.01790 1.23048 0.94573 0.98877 1.00886 1.23968 0.98964 0.77537 0.99129 0.89866 1.86160 1.64141 1.23078 1.47527 1.18646 0.89725 0.90423 0.88705 1.20107 1.04311 0.90591 1.03101 1.20005 0.93976 0.99420 0.92017 1.19846 1.04531 0.93548 0.99994 1.22428 1.02672 1.00286 0.96698 1.23863 0.99774 0.82940 1.00750 1.84037 1.52787 1.34825 1.38045 1.19213 0.94462 0.93934 0.87675 1.20003 1.03950 1.00994 0.97879 1.21925 0.94180 0.86489 0.98078 0.93620 0.93054 0.93151 0.91293 0.91026 0.84483 0.85014 0.82763 0.77905 0.83868 0.95084 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.54 3.40 -170.05 -0.58 -16.12 16 10 C 0.18 4.30 5.37 -3.06 -0.02 4.29 16 11 C -0.14 -2.57 6.69 -24.89 -0.17 -2.74 16 12 C 0.06 1.12 2.80 -24.59 -0.07 1.05 16 13 H 0.08 1.50 6.21 -51.93 -0.32 1.18 16 14 O -0.30 -5.07 9.94 -19.52 -0.19 -5.27 16 15 C 0.17 2.68 6.68 -39.20 -0.26 2.41 16 16 C -0.16 -2.11 9.91 -39.79 -0.39 -2.51 16 17 C -0.04 -0.42 10.04 -39.71 -0.40 -0.82 16 18 C -0.18 -2.35 6.40 -105.12 -0.67 -3.03 16 19 C -0.20 -2.10 11.14 -37.61 -0.42 -2.52 16 20 C -0.01 -0.09 11.96 29.23 0.35 0.26 16 21 O -0.20 -2.78 10.58 3.72 0.04 -2.74 16 22 C 0.09 1.44 7.41 -38.49 -0.29 1.16 16 23 C -0.21 -3.33 8.95 -39.31 -0.35 -3.69 16 24 C 0.12 2.58 6.85 -2.51 -0.02 2.56 16 25 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 27 H 0.05 1.33 7.50 -51.93 -0.39 0.94 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 2.37 5.59 -52.48 -0.29 2.08 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.91 7.79 -51.93 -0.40 0.51 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -31.50 302.35 -7.88 -39.38 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.30 Total: -0.08 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.95 Total: -10.47 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.01 Total: -42.44 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.15 Total: -8.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.50 -7.88 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228724789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.508 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds