Wall clock time and date at job start Mon Mar 30 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48501 * 109.46913 * 270.00383 * 3 2 1 5 5 H 1.48501 * 109.47074 * 29.99783 * 3 2 1 6 6 H 1.48495 * 109.46985 * 150.00132 * 3 2 1 7 7 C 1.38811 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64676 * 359.97433 * 9 7 2 11 11 C 1.54324 * 107.27156 * 178.99688 * 10 9 7 12 12 C 1.55160 * 102.94044 * 337.80513 * 11 10 9 13 13 H 1.09001 * 111.00651 * 277.39077 * 12 11 10 14 14 O 1.42904 * 111.00051 * 153.57667 * 12 11 10 15 15 C 1.35930 * 116.99560 * 156.20890 * 14 12 11 16 16 C 1.39211 * 119.71486 * 185.46775 * 15 14 12 17 17 C 1.36658 * 120.36085 * 180.02562 * 16 15 14 18 18 C 1.39432 * 119.79293 * 0.02562 * 17 16 15 19 19 C 1.46842 * 134.28922 * 179.67685 * 18 17 16 20 20 C 1.33953 * 106.19237 * 179.89423 * 19 18 17 21 21 O 1.34509 * 110.15379 * 0.40037 * 20 19 18 22 22 C 1.34818 * 110.88675 * 359.74053 * 21 20 19 23 23 C 1.38306 * 119.72206 * 5.49379 * 15 14 12 24 24 C 1.47470 * 125.62946 * 179.97438 * 9 7 2 25 25 H 0.97005 * 119.99465 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.88445 * 59.58156 * 10 9 7 27 27 H 1.08998 * 110.01212 * 298.48490 * 10 9 7 28 28 H 1.09006 * 110.72277 * 219.44418 * 11 10 9 29 29 H 1.08999 * 110.72369 * 96.17124 * 11 10 9 30 30 H 1.07999 * 119.81734 * 0.04841 * 16 15 14 31 31 H 1.08007 * 120.10537 * 179.97438 * 17 16 15 32 32 H 1.08006 * 126.90258 * 359.97438 * 19 18 17 33 33 H 1.07995 * 124.92177 * 180.17192 * 20 19 18 34 34 H 1.08005 * 120.11386 * 359.97438 * 23 15 14 35 35 H 1.09000 * 110.34693 * 85.23513 * 24 9 7 36 36 H 1.08995 * 110.40583 * 322.89608 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0257 12 6 0.8514 -4.6562 -0.6112 13 1 0.8553 -4.5972 -1.6996 14 8 1.0244 -6.0055 -0.1735 15 6 1.7925 -6.8130 -0.9518 16 6 1.9061 -8.1654 -0.6418 17 6 2.6751 -8.9890 -1.4149 18 6 3.3498 -8.4714 -2.5198 19 6 4.2411 -9.0429 -3.5373 20 6 4.5739 -8.0332 -4.3521 21 8 3.9891 -6.8938 -3.9409 22 6 3.2412 -7.1076 -2.8398 23 6 2.4549 -6.2839 -2.0446 24 6 1.9340 -3.7314 -0.0016 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5583 -2.0523 -0.8829 27 1 -0.5561 -2.0837 0.9012 28 1 -1.2991 -4.2516 -0.6751 29 1 -0.6311 -4.4178 0.9818 30 1 1.3833 -8.5658 0.2142 31 1 2.7607 -10.0376 -1.1703 32 1 4.5625 -10.0712 -3.6141 33 1 5.2212 -8.1204 -5.2122 34 1 2.3616 -5.2336 -2.2785 35 1 2.1685 -4.0420 1.0165 36 1 2.8325 -3.7411 -0.6186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228724789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:54 Heat of formation + Delta-G solvation = 7.430270 kcal Electronic energy + Delta-G solvation = -20332.691289 eV Core-core repulsion = 17170.018105 eV Total energy + Delta-G solvation = -3162.673184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.36119 -41.07156 -38.79191 -37.25707 -34.33866 -33.36388 -31.61715 -31.24598 -29.64782 -28.97368 -26.57632 -24.53131 -23.27168 -22.42514 -22.09241 -21.66366 -19.29578 -19.09812 -18.20111 -17.91927 -17.11283 -16.80142 -16.44958 -15.91720 -15.65807 -15.50924 -15.15527 -14.80703 -14.28621 -13.96809 -13.95862 -13.70069 -13.47730 -13.00475 -12.95020 -12.83112 -12.64666 -12.22892 -12.06727 -12.05479 -11.90556 -11.64128 -11.50681 -10.84092 -10.75746 -9.61668 -9.00390 -8.84788 -7.90497 -5.28194 -0.03463 0.33695 1.44808 1.46921 1.47420 1.55768 1.80085 2.09902 2.47885 2.67482 3.28503 3.54455 3.57972 3.63340 3.77070 3.88389 3.96583 4.03491 4.12814 4.25557 4.42333 4.54678 4.60154 4.71053 4.75156 4.78167 4.90037 4.93705 5.15077 5.21354 5.30862 5.38104 5.51044 5.55712 5.61397 5.67213 6.08718 6.13664 6.37128 7.03358 7.67458 8.31217 9.19855 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025864 B = 0.004236 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.308855 B = 6608.874454 C = 7410.577180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.060 4.060 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.185 3.815 11 C -0.121 4.121 12 C 0.081 3.919 13 H 0.085 0.915 14 O -0.299 6.299 15 C 0.148 3.852 16 C -0.163 4.163 17 C -0.026 4.026 18 C -0.184 4.184 19 C -0.202 4.202 20 C -0.010 4.010 21 O -0.220 6.220 22 C 0.061 3.939 23 C -0.226 4.226 24 C 0.119 3.881 25 H 0.250 0.750 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.191 0.809 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.029 0.971 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -20.900 -6.211 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.253 4.253 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.061 3.939 11 C -0.159 4.159 12 C 0.024 3.976 13 H 0.103 0.897 14 O -0.211 6.211 15 C 0.102 3.898 16 C -0.181 4.181 17 C -0.044 4.044 18 C -0.185 4.185 19 C -0.221 4.221 20 C -0.073 4.073 21 O -0.122 6.122 22 C 0.014 3.986 23 C -0.245 4.245 24 C -0.007 4.007 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.177 0.823 31 H 0.190 0.810 32 H 0.208 0.792 33 H 0.263 0.737 34 H 0.142 0.858 35 H 0.047 0.953 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.708 -20.471 -6.137 22.120 hybrid contribution 0.341 1.534 -0.114 1.575 sum 6.050 -18.937 -6.251 20.840 Atomic orbital electron populations 1.70156 1.06252 1.25627 1.57643 1.25674 0.96701 1.01012 1.01947 0.85035 0.77625 0.78783 0.77601 1.21064 1.21658 1.19481 1.19438 0.91011 0.83466 1.44054 0.90124 1.44624 1.02584 1.00574 1.87374 1.20963 0.83589 0.90534 0.98854 1.22873 0.95702 0.94951 1.02381 1.23531 0.97060 0.78200 0.98851 0.89678 1.86121 1.64982 1.22005 1.48040 1.18935 0.90493 0.91336 0.89020 1.20427 1.04442 0.89355 1.03907 1.20465 0.92194 1.01075 0.90672 1.20358 1.04574 0.92836 1.00728 1.22867 1.01778 1.01967 0.95445 1.24837 0.99164 0.81681 1.01602 1.84023 1.53143 1.37037 1.37982 1.19410 0.95501 0.95122 0.88588 1.19947 1.05254 1.00398 0.98947 1.21996 0.95137 0.85475 0.98076 0.94065 0.95938 0.96289 0.88635 0.89849 0.82283 0.80983 0.79173 0.73674 0.85805 0.95325 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 10.31 21.65 0.22 -56.96 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 3 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.25 -14.49 10.28 84.03 0.86 -13.62 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -33.30 3.40 -691.91 -2.35 -35.65 16 10 C 0.19 9.31 5.37 86.73 0.47 9.77 16 11 C -0.12 -4.59 6.69 31.78 0.21 -4.38 16 12 C 0.08 3.01 2.80 31.98 0.09 3.10 16 13 H 0.09 3.15 6.21 -2.39 -0.01 3.14 16 14 O -0.30 -10.07 9.94 -92.76 -0.92 -11.00 16 15 C 0.15 4.54 6.68 22.52 0.15 4.69 16 16 C -0.16 -3.87 9.91 22.13 0.22 -3.65 16 17 C -0.03 -0.54 10.04 22.19 0.22 -0.31 16 18 C -0.18 -4.42 6.40 -20.19 -0.13 -4.55 16 19 C -0.20 -3.49 11.14 23.55 0.26 -3.23 16 20 C -0.01 -0.17 11.96 66.84 0.80 0.63 16 21 O -0.22 -6.10 10.58 -9.62 -0.10 -6.21 16 22 C 0.06 1.85 7.41 22.98 0.17 2.02 16 23 C -0.23 -7.37 8.95 22.44 0.20 -7.17 16 24 C 0.12 5.26 6.85 86.84 0.59 5.85 16 25 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.02 1.24 7.38 -2.38 -0.02 1.22 16 27 H 0.02 1.05 7.50 -2.39 -0.02 1.03 16 28 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 29 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.25 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.12 4.37 5.59 -2.91 -0.02 4.35 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 1.84 7.79 -2.39 -0.02 1.83 16 Total: -1.00 -70.97 302.35 4.56 -66.42 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.09 Total: 9.02 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.59 Total: -13.84 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -2.13 Total: -92.61 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.02 Total: -17.20 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -70.97 4.56 -66.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228724789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.848 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds