Wall clock time and date at job start Mon Mar 30 2020 00:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00368 * 2 1 4 4 H 1.48501 * 109.47014 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47330 * 120.00076 * 3 2 1 6 6 H 1.48498 * 109.47130 * 240.00218 * 3 2 1 7 7 C 1.37882 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99529 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.47481 * 110.99842 * 265.96940 * 10 9 7 12 12 C 1.53508 * 87.93459 * 221.29418 * 11 10 9 13 13 O 1.42893 * 114.17467 * 139.66745 * 12 11 10 14 14 C 1.35930 * 117.00103 * 107.75677 * 13 12 11 15 15 C 1.39200 * 119.72032 * 173.71937 * 14 13 12 16 16 C 1.36670 * 120.36498 * 179.77943 * 15 14 13 17 17 C 1.39430 * 119.78619 * 0.47054 * 16 15 14 18 18 C 1.46845 * 134.28774 * 179.75367 * 17 16 15 19 19 C 1.33956 * 106.19398 * 180.02562 * 18 17 16 20 20 O 1.34509 * 110.15574 * 0.02562 * 19 18 17 21 21 C 1.34824 * 110.88148 * 359.97438 * 20 19 18 22 22 C 1.38314 * 119.71597 * 353.99113 * 14 13 12 23 23 C 1.47479 * 111.00536 * 169.99643 * 10 9 7 24 24 H 0.97008 * 119.99689 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47145 * 299.99726 * 9 7 2 26 26 H 1.08992 * 109.47513 * 59.99453 * 9 7 2 27 27 H 1.09002 * 113.47658 * 336.05841 * 11 10 9 28 28 H 1.08995 * 113.47851 * 106.52752 * 11 10 9 29 29 H 1.09003 * 114.34413 * 272.36812 * 12 11 10 30 30 H 1.07998 * 119.81963 * 359.97438 * 15 14 13 31 31 H 1.08002 * 120.10940 * 180.25548 * 16 15 14 32 32 H 1.08001 * 126.90205 * 0.02717 * 18 17 16 33 33 H 1.07994 * 124.92116 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.11280 * 0.02562 * 22 14 13 35 35 H 1.08994 * 113.47772 * 253.46984 * 23 10 9 36 36 H 1.09004 * 113.47268 * 23.93578 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 2.4764 -4.0797 -1.3749 12 6 2.4195 -5.5178 -0.8409 13 8 1.7501 -6.4372 -1.7061 14 6 2.5238 -7.3413 -2.3632 15 6 1.9228 -8.3456 -3.1167 16 6 2.6880 -9.2587 -3.7863 17 6 4.0783 -9.1894 -3.7058 18 6 5.1788 -9.9802 -4.2711 19 6 6.3102 -9.4165 -3.8277 20 8 6.0259 -8.3593 -3.0462 21 6 4.6933 -8.1825 -2.9430 22 6 3.9015 -7.2589 -2.2727 23 6 1.5182 -4.8987 0.2366 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5574 0.8881 26 1 0.6246 -2.5562 -0.8918 27 1 1.6769 -3.8457 -2.0779 28 1 3.4608 -3.7923 -1.7441 29 1 3.3702 -5.8953 -0.4645 30 1 0.8458 -8.4016 -3.1751 31 1 2.2174 -10.0337 -4.3731 32 1 5.0933 -10.8430 -4.9151 33 1 7.3062 -9.7610 -4.0634 34 1 4.3601 -6.4796 -1.6821 35 1 1.6905 -5.3052 1.2331 36 1 0.4630 -4.8831 -0.0364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228727973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:51 Heat of formation + Delta-G solvation = 17.232866 kcal Electronic energy + Delta-G solvation = -19788.725784 eV Core-core repulsion = 16626.477673 eV Total energy + Delta-G solvation = -3162.248111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.36105 -41.63668 -39.73136 -37.34348 -35.04805 -33.38654 -31.72182 -31.16722 -29.49207 -27.39948 -26.90651 -24.84185 -23.61897 -22.80408 -22.34060 -20.99259 -19.38612 -18.67854 -18.24652 -17.93375 -17.14789 -16.93752 -16.50169 -16.30213 -15.88059 -15.48590 -15.00222 -14.94034 -14.76093 -14.13623 -13.83938 -13.73614 -13.67598 -13.18585 -13.02839 -12.90420 -12.70487 -12.47259 -12.26567 -11.93394 -11.75946 -11.50970 -11.26458 -10.82039 -10.64330 -9.84135 -9.62585 -8.86142 -8.25778 -6.36674 -0.04839 0.32498 1.39139 1.42652 1.46946 1.50853 1.78152 2.08765 2.38354 2.65236 3.06350 3.20488 3.29864 3.54134 3.69543 3.84308 3.96276 4.06816 4.15180 4.28891 4.40063 4.50812 4.55582 4.60667 4.68207 4.74445 4.77558 4.81574 5.00019 5.13078 5.18454 5.30169 5.48626 5.50878 5.59063 5.68906 5.99142 6.09452 6.32211 6.35877 6.76613 7.32879 8.85468 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.003319 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.375133 B = 8434.393854 C = 8947.042873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.176 3.824 10 N -0.475 5.475 11 C -0.009 4.009 12 C 0.067 3.933 13 O -0.304 6.304 14 C 0.146 3.854 15 C -0.167 4.167 16 C -0.028 4.028 17 C -0.185 4.185 18 C -0.206 4.206 19 C -0.006 4.006 20 O -0.215 6.215 21 C 0.064 3.936 22 C -0.220 4.220 23 C 0.003 3.997 24 H 0.267 0.733 25 H 0.008 0.992 26 H -0.018 1.018 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.248 0.752 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -22.383 -8.904 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.049 3.951 10 N -0.199 5.199 11 C -0.138 4.138 12 C 0.011 3.989 13 O -0.216 6.216 14 C 0.100 3.900 15 C -0.185 4.185 16 C -0.046 4.046 17 C -0.186 4.186 18 C -0.225 4.225 19 C -0.069 4.069 20 O -0.117 6.117 21 C 0.016 3.984 22 C -0.239 4.239 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.000 1.000 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.147 0.853 30 H 0.171 0.829 31 H 0.186 0.814 32 H 0.205 0.795 33 H 0.264 0.736 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.669 -21.811 -8.324 25.268 hybrid contribution -0.581 1.080 -0.353 1.276 sum 9.087 -20.731 -8.677 24.241 Atomic orbital electron populations 1.70068 1.07719 1.28203 1.51348 1.25951 0.95828 1.03341 0.94520 0.85388 0.78164 0.77623 0.79171 1.20520 1.19179 1.19302 1.21384 0.93669 0.91105 1.50748 0.92121 1.19944 0.90516 0.90072 0.94559 1.68914 1.33026 1.01825 1.16139 1.24300 1.02611 0.93889 0.93021 1.24238 0.97765 0.86504 0.90403 1.86204 1.35624 1.43281 1.56534 1.18880 0.88503 0.89744 0.92853 1.20418 1.01958 0.95122 1.01042 1.20429 0.90406 0.97615 0.96167 1.20359 0.95678 0.98916 1.03678 1.22863 0.89700 1.03787 1.06099 1.24827 1.02214 0.86557 0.93298 1.84022 1.22369 1.45653 1.59662 1.19400 0.81911 0.97663 0.99431 1.19935 0.91710 1.03550 1.08705 1.24088 0.97814 0.90925 0.99806 0.92471 0.97440 1.00040 0.92176 0.89397 0.85287 0.82920 0.81438 0.79493 0.73592 0.84387 0.87405 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -31.07 9.39 25.60 0.24 -30.83 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.18 9.60 4.57 85.56 0.39 9.99 16 10 N -0.48 -21.11 6.32 -932.96 -5.89 -27.00 16 11 C -0.01 -0.35 7.55 83.57 0.63 0.29 16 12 C 0.07 2.15 3.99 30.94 0.12 2.27 16 13 O -0.30 -9.45 10.18 -92.76 -0.94 -10.40 16 14 C 0.15 4.04 6.68 22.52 0.15 4.19 16 15 C -0.17 -3.78 9.91 22.13 0.22 -3.56 16 16 C -0.03 -0.54 10.04 22.19 0.22 -0.32 16 17 C -0.19 -4.06 6.40 -20.19 -0.13 -4.19 16 18 C -0.21 -3.16 11.14 23.55 0.26 -2.90 16 19 C -0.01 -0.09 11.96 66.84 0.80 0.71 16 20 O -0.22 -5.11 10.58 -9.67 -0.10 -5.21 16 21 C 0.06 1.67 7.41 22.98 0.17 1.84 16 22 C -0.22 -6.08 9.03 22.45 0.20 -5.88 16 23 C 0.00 0.09 7.52 83.58 0.63 0.72 16 24 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 25 H 0.01 0.44 8.08 -2.38 -0.02 0.42 16 26 H -0.02 -1.06 7.30 -2.39 -0.02 -1.08 16 27 H 0.06 2.52 7.42 -2.39 -0.02 2.50 16 28 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.13 3.62 5.98 -2.39 -0.01 3.61 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.25 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.14 3.73 5.89 -2.91 -0.02 3.72 16 35 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.07 2.51 7.91 -2.38 -0.02 2.49 16 Total: -1.00 -70.80 309.50 0.84 -69.96 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.09 Total: 9.32 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 4.38 Total: -27.08 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -5.61 Total: -83.57 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.05 Total: -15.61 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.80 0.84 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228727973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.197 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds