Wall clock time and date at job start Mon Mar 30 2020 01:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35678 * 117.00275 * 2 1 4 4 C 1.37924 * 120.18881 * 359.97301 * 3 2 1 5 5 C 1.39663 * 119.93372 * 180.02562 * 4 3 2 6 6 C 1.47994 * 119.83931 * 180.02562 * 5 4 3 7 7 C 1.42500 * 128.21348 * 64.68010 * 6 5 4 8 8 C 1.50704 * 126.87276 * 359.97438 * 7 6 5 9 9 N 1.29955 * 106.25187 * 179.83652 * 7 6 5 10 10 O 1.20825 * 112.06288 * 0.45283 * 9 7 6 11 11 C 1.33914 * 111.92088 * 359.70330 * 10 9 7 12 12 C 1.50706 * 126.91363 * 179.97438 * 11 10 9 13 13 C 1.40106 * 120.31780 * 0.02562 * 5 4 3 14 14 C 1.36104 * 120.38794 * 0.02562 * 13 5 4 15 15 C 1.40919 * 120.05737 * 359.97438 * 14 13 5 16 16 C 1.40837 * 120.15731 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99923 * 204.94555 * 16 15 14 18 18 C 1.39925 * 120.00109 * 24.95109 * 16 15 14 19 19 N 1.30883 * 120.00044 * 17.83038 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 197.83732 * 18 16 15 21 21 H 1.48504 * 109.47157 * 59.99212 * 20 18 16 22 22 H 1.48503 * 109.47268 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46811 * 299.99516 * 20 18 16 24 24 H 1.08997 * 109.46971 * 59.99930 * 1 2 3 25 25 H 1.09005 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47023 * 299.99980 * 1 2 3 27 27 H 1.08001 * 120.03373 * 0.05287 * 4 3 2 28 28 H 1.09001 * 109.47083 * 90.00570 * 8 7 6 29 29 H 1.09000 * 109.46997 * 210.00298 * 8 7 6 30 30 H 1.09000 * 109.47096 * 330.00475 * 8 7 6 31 31 H 1.09004 * 109.46765 * 270.02922 * 12 11 10 32 32 H 1.09000 * 109.46855 * 30.02135 * 12 11 10 33 33 H 1.08993 * 109.47456 * 150.02641 * 12 11 10 34 34 H 1.07999 * 119.80482 * 180.27158 * 13 5 4 35 35 H 1.07997 * 119.97350 * 180.02562 * 14 13 5 36 36 H 0.97000 * 120.00131 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2977 2.3681 -0.0006 5 6 1.9374 3.6096 -0.0011 6 6 1.1335 4.8522 -0.0011 7 6 0.2529 5.3324 1.0111 8 6 -0.0592 4.6685 2.3276 9 7 -0.2247 6.4589 0.5732 10 8 0.2025 6.7378 -0.5220 11 6 1.0549 5.8107 -0.9772 12 6 1.7812 5.8193 -2.2977 13 6 3.3364 3.6844 -0.0016 14 6 4.0866 2.5488 -0.0021 15 6 3.4580 1.2876 -0.0016 16 6 4.2322 0.1111 -0.0016 17 1 3.8205 -0.8062 -0.3957 18 6 5.5347 0.1308 0.5092 19 7 5.9168 1.1091 1.2901 20 14 6.7285 -1.2392 0.0762 21 1 6.9208 -1.2815 -1.3957 22 1 8.0335 -0.9864 0.7384 23 1 6.1804 -2.5387 0.5413 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2190 2.3158 -0.0001 28 1 0.6457 5.0129 3.0843 29 1 -1.0737 4.9253 2.6324 30 1 0.0247 3.5873 2.2181 31 1 1.1738 5.3156 -3.0497 32 1 1.9614 6.8490 -2.6064 33 1 2.7334 5.2997 -2.1920 34 1 3.8225 4.6489 0.0024 35 1 5.1646 2.6142 -0.0021 36 1 6.8199 1.1230 1.6439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242106968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:56 Heat of formation + Delta-G solvation = 29.368142 kcal Electronic energy + Delta-G solvation = -20674.445267 eV Core-core repulsion = 17512.723381 eV Total energy + Delta-G solvation = -3161.721886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.34205 -38.72967 -36.37105 -34.70579 -33.56528 -32.73687 -29.93070 -28.91387 -28.25953 -27.36640 -26.56616 -25.26219 -22.37854 -20.73451 -20.40793 -19.43818 -17.53892 -17.17841 -16.89806 -15.90965 -15.43126 -14.71025 -14.61898 -14.23981 -13.85806 -13.39210 -13.12208 -13.00928 -12.80197 -12.66542 -12.48848 -12.30511 -11.96524 -11.79594 -11.39158 -11.28278 -11.10416 -10.97208 -10.71747 -10.58095 -10.04263 -9.80801 -9.64422 -9.36602 -9.22421 -8.61533 -7.49173 -7.12204 -6.81947 -4.33486 1.88702 2.43696 2.83756 2.95012 3.03177 3.06158 3.15051 3.57963 3.87449 4.44048 4.47649 4.66369 4.94772 5.41315 5.54167 5.58980 5.71480 5.72074 5.76514 5.81273 5.82237 5.92646 6.03576 6.06106 6.13735 6.18892 6.34008 6.37544 6.56428 6.86248 6.98004 7.17431 7.26762 7.61548 7.65777 7.95116 8.09295 8.32166 8.58993 8.72392 8.75525 8.97681 10.06937 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.005398 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.972300 B = 5186.155471 C = 5714.222802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.008 3.992 4 C -0.148 4.148 5 C -0.139 4.139 6 C -0.102 4.102 7 C 0.018 3.982 8 C -0.069 4.069 9 N -0.382 5.382 10 O 0.086 5.914 11 C -0.059 4.059 12 C -0.062 4.062 13 C -0.095 4.095 14 C -0.153 4.153 15 C 0.107 3.893 16 C -0.436 4.436 17 H 0.085 0.915 18 C 0.073 3.927 19 N -0.786 5.786 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.264 1.264 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 3.295 -2.911 6.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.036 4.036 4 C -0.167 4.167 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.127 4.127 9 N -0.090 5.090 10 O 0.022 5.978 11 C -0.122 4.122 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.172 4.172 15 C 0.104 3.896 16 C -0.464 4.464 17 H 0.103 0.897 18 C -0.146 4.146 19 N -0.411 5.411 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.189 1.189 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.516 4.076 -2.261 7.222 hybrid contribution 0.706 -0.965 -0.089 1.199 sum -4.810 3.112 -2.351 6.192 Atomic orbital electron populations 1.22727 0.81731 1.01760 0.99902 1.85973 1.18178 1.28078 1.90417 1.19015 0.92229 0.82538 1.09843 1.20493 0.97056 0.91708 1.07448 1.16789 0.91341 0.87761 1.18209 1.19863 1.00484 0.97644 0.92609 1.23712 0.98066 0.92774 0.99489 1.20082 1.01543 1.00646 0.90426 1.73543 1.21176 1.17534 0.96747 1.84610 1.46400 1.41910 1.24857 1.24611 0.97138 0.91194 0.99219 1.20204 0.99698 1.03121 0.88955 1.20311 0.91920 0.97224 1.01871 1.20728 0.99633 0.90382 1.06466 1.17114 0.87336 0.94065 0.91078 1.19453 0.96569 0.96845 1.33576 0.89730 1.25970 0.98931 0.97020 0.92656 1.69835 1.19413 1.30521 1.21350 0.86301 0.78769 0.81328 0.80025 1.18692 1.20298 1.18862 0.94282 0.89985 0.94208 0.88673 0.90528 0.91426 0.89862 0.90163 0.90832 0.88754 0.89306 0.85681 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -6.98 9.77 -18.74 -0.18 -7.16 16 3 C 0.01 0.19 6.71 -38.45 -0.26 -0.07 16 4 C -0.15 -3.21 8.46 -39.16 -0.33 -3.54 16 5 C -0.14 -2.96 5.57 -104.67 -0.58 -3.54 16 6 C -0.10 -1.97 5.70 -104.70 -0.60 -2.57 16 7 C 0.02 0.33 7.37 -81.74 -0.60 -0.27 16 8 C -0.07 -1.09 10.41 36.01 0.37 -0.72 16 9 N -0.38 -7.12 12.03 33.72 0.41 -6.71 16 10 O 0.09 1.52 11.16 17.53 0.20 1.72 16 11 C -0.06 -1.00 7.55 -34.74 -0.26 -1.27 16 12 C -0.06 -0.82 10.32 36.01 0.37 -0.45 16 13 C -0.09 -2.10 9.20 -39.65 -0.36 -2.46 16 14 C -0.15 -3.73 8.61 -39.33 -0.34 -4.07 16 15 C 0.11 2.75 5.58 -106.65 -0.60 2.15 16 16 C -0.44 -11.23 8.69 -37.97 -0.33 -11.56 16 17 H 0.08 2.17 7.64 -52.49 -0.40 1.76 16 18 C 0.07 1.76 5.13 -17.32 -0.09 1.67 16 19 N -0.79 -19.41 10.97 55.55 0.61 -18.80 16 20 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.10 1.89 6.29 -52.49 -0.33 1.56 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.33 7.85 -51.93 -0.41 0.93 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.31 7.59 -51.93 -0.39 0.92 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.13 3.14 6.17 -52.49 -0.32 2.81 16 36 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -27.98 311.89 -6.24 -34.22 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.32 Total: 4.14 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.61 Total: -25.11 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 1.01 Total: -25.51 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: 0.01 Total: -5.45 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.98 -6.24 -34.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242106968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.592 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds