Wall clock time and date at job start Mon Mar 30 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35546 * 117.00106 * 2 1 4 4 C 1.39149 * 120.47630 * 359.95487 * 3 2 1 5 5 C 1.38284 * 118.64792 * 180.02562 * 4 3 2 6 6 C 1.40162 * 119.57263 * 0.02562 * 5 4 3 7 7 C 1.48169 * 119.52605 * 179.97438 * 6 5 4 8 8 C 1.46781 * 127.13062 * 353.31645 * 7 6 5 9 9 C 1.34327 * 106.01136 * 179.82966 * 8 7 6 10 10 C 1.50701 * 125.48140 * 180.12069 * 9 8 7 11 11 O 1.34181 * 109.03717 * 0.43650 * 9 8 7 12 12 C 1.33989 * 110.78580 * 359.70979 * 11 9 8 13 13 C 1.50698 * 125.78455 * 179.97438 * 12 11 9 14 14 N 1.32210 * 120.95114 * 0.02562 * 6 5 4 15 15 C 1.33629 * 121.44504 * 359.97438 * 14 6 5 16 16 C 1.40961 * 119.83134 * 179.72777 * 15 14 6 17 17 H 1.08003 * 120.00654 * 135.68950 * 16 15 14 18 18 C 1.40004 * 119.99521 * 315.69108 * 16 15 14 19 19 N 1.30797 * 119.99847 * 163.79647 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 343.79128 * 18 16 15 21 21 H 1.48499 * 109.46628 * 95.78270 * 20 18 16 22 22 H 1.48497 * 109.47213 * 215.78181 * 20 18 16 23 23 H 1.48493 * 109.47070 * 335.78454 * 20 18 16 24 24 H 1.08996 * 109.47044 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46963 * 300.00482 * 1 2 3 26 26 H 1.08999 * 109.47136 * 59.99706 * 1 2 3 27 27 H 1.07996 * 120.67862 * 0.04471 * 4 3 2 28 28 H 1.08007 * 120.21620 * 179.97438 * 5 4 3 29 29 H 1.07999 * 126.99896 * 0.02562 * 8 7 6 30 30 H 1.09000 * 109.46905 * 180.34688 * 10 9 8 31 31 H 1.09001 * 109.47252 * 300.34044 * 10 9 8 32 32 H 1.09004 * 109.47009 * 60.34342 * 10 9 8 33 33 H 1.09010 * 109.46827 * 276.87216 * 13 12 11 34 34 H 1.08992 * 109.47615 * 36.86949 * 13 12 11 35 35 H 1.08996 * 109.46857 * 156.87841 * 13 12 11 36 36 H 0.96995 * 119.99747 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 1.2963 2.3810 -0.0009 5 6 1.9631 3.5924 -0.0015 6 6 3.3646 3.6106 -0.0016 7 6 4.0780 4.9092 -0.0027 8 6 3.4860 6.2453 -0.1399 9 6 4.5102 7.1123 -0.0806 10 6 4.3934 8.6119 -0.1743 11 8 5.6548 6.4281 0.0687 12 6 5.4180 5.1102 0.1174 13 6 6.4597 4.0331 0.2774 14 7 4.0592 2.4857 -0.0017 15 6 3.4555 1.2936 -0.0012 16 6 4.2295 0.1155 -0.0072 17 1 3.9699 -0.7047 0.6458 18 6 5.3350 0.0087 -0.8596 19 7 6.2309 -0.9221 -0.6552 20 14 5.5305 1.1955 -2.2888 21 1 6.4184 2.3151 -1.8846 22 1 6.1285 0.4825 -3.4461 23 1 4.2001 1.7324 -2.6719 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.2169 2.3462 -0.0010 28 1 1.4076 4.5187 -0.0026 29 1 2.4394 6.4832 -0.2606 30 1 5.3850 9.0588 -0.1018 31 1 3.9421 8.8822 -1.1290 32 1 3.7688 8.9793 0.6399 33 1 6.8976 3.8039 -0.6942 34 1 7.2399 4.3799 0.9548 35 1 5.9950 3.1363 0.6870 36 1 6.9966 -0.9963 -1.2459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242405196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:39 Heat of formation + Delta-G solvation = -0.923293 kcal Electronic energy + Delta-G solvation = -20796.331153 eV Core-core repulsion = 17633.295732 eV Total energy + Delta-G solvation = -3163.035422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.98573 -39.22043 -37.04624 -33.74562 -32.73811 -32.64855 -31.10109 -29.52149 -28.99053 -26.82825 -25.68719 -24.30560 -22.31052 -21.68704 -20.41437 -18.87799 -17.63371 -16.96270 -15.96926 -15.93284 -15.66894 -15.12818 -14.86490 -14.20803 -13.50830 -13.29524 -13.21565 -13.07357 -12.98223 -12.82330 -12.59545 -12.32863 -12.11740 -11.97529 -11.67070 -11.39335 -11.10111 -10.85972 -10.81215 -10.72714 -10.30083 -9.96849 -9.33564 -9.08020 -8.49311 -8.17266 -8.00720 -6.91256 -6.76064 -4.47736 1.82382 2.28434 2.41768 3.19144 3.24036 3.30368 3.40599 3.44233 4.16712 4.22826 4.60607 4.83527 5.24052 5.26077 5.32338 5.45783 5.48920 5.55760 5.61946 5.65009 5.70799 5.78711 5.88847 5.93983 5.98950 6.15376 6.24525 6.41851 6.50441 6.56935 6.81772 6.93003 7.13396 7.17782 7.31818 7.50318 7.70880 8.05847 8.37179 8.68977 8.79465 9.45961 10.23290 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.007529 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.476926 B = 3718.183822 C = 5019.900245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.297 6.297 3 C 0.008 3.992 4 C -0.153 4.153 5 C -0.230 4.230 6 C 0.185 3.815 7 C -0.129 4.129 8 C -0.192 4.192 9 C -0.032 4.032 10 C -0.067 4.067 11 O -0.186 6.186 12 C 0.027 3.973 13 C -0.081 4.081 14 N -0.514 5.514 15 C 0.255 3.745 16 C -0.432 4.432 17 H 0.101 0.899 18 C 0.105 3.895 19 N -0.813 5.813 20 Si 0.914 3.086 21 H -0.255 1.255 22 H -0.296 1.296 23 H -0.265 1.265 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 11.271 -0.205 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.209 6.209 3 C -0.040 4.040 4 C -0.178 4.178 5 C -0.253 4.253 6 C 0.047 3.953 7 C -0.131 4.131 8 C -0.212 4.212 9 C -0.081 4.081 10 C -0.123 4.123 11 O -0.085 6.085 12 C -0.024 4.024 13 C -0.137 4.137 14 N -0.231 5.231 15 C 0.126 3.874 16 C -0.465 4.465 17 H 0.119 0.881 18 C -0.114 4.114 19 N -0.439 5.439 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.224 1.224 23 H -0.189 1.189 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.165 0.835 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.456 11.052 -0.211 11.582 hybrid contribution -1.455 0.577 -0.694 1.712 sum -4.911 11.628 -0.905 12.655 Atomic orbital electron populations 1.22857 0.81238 1.02481 1.00077 1.86054 1.18574 1.27074 1.89216 1.20533 0.93812 0.83507 1.06177 1.21100 0.98481 0.92502 1.05696 1.21040 0.93755 0.96651 1.13834 1.18702 0.89515 0.89781 0.97270 1.19820 0.91811 0.92039 1.09471 1.22419 0.99300 0.91025 1.08416 1.22042 0.83567 0.94663 1.07822 1.20212 1.03241 0.85885 1.02999 1.83695 1.34140 1.18390 1.72240 1.22771 0.95830 0.80965 1.02812 1.20767 0.95090 0.94860 1.02968 1.68281 1.37595 0.96660 1.20572 1.18118 0.86311 0.91332 0.91654 1.18906 1.07778 0.98796 1.21052 0.88120 1.25839 0.92573 0.94472 0.98550 1.69681 1.08242 1.30701 1.35245 0.86170 0.80266 0.80366 0.79149 1.17949 1.22400 1.18934 0.89359 0.93936 0.93893 0.86917 0.87500 0.83540 0.90954 0.90165 0.90135 0.90342 0.91973 0.85705 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.83 101.05 0.99 1.46 16 2 O -0.30 -6.59 9.94 -18.33 -0.18 -6.77 16 3 C 0.01 0.20 6.74 -38.05 -0.26 -0.06 16 4 C -0.15 -3.21 9.11 -39.23 -0.36 -3.57 16 5 C -0.23 -4.85 9.65 -38.84 -0.37 -5.23 16 6 C 0.18 4.26 6.76 -82.90 -0.56 3.70 16 7 C -0.13 -2.69 6.25 -103.16 -0.65 -3.34 16 8 C -0.19 -3.27 10.41 -37.51 -0.39 -3.67 16 9 C -0.03 -0.50 7.29 -35.69 -0.26 -0.76 16 10 C -0.07 -0.68 10.41 36.01 0.37 -0.30 16 11 O -0.19 -3.36 10.54 6.87 0.07 -3.29 16 12 C 0.03 0.54 7.37 -35.10 -0.26 0.28 16 13 C -0.08 -1.56 9.88 36.00 0.36 -1.20 16 14 N -0.51 -12.90 5.22 -7.57 -0.04 -12.94 16 15 C 0.26 6.68 5.29 -84.86 -0.45 6.23 16 16 C -0.43 -11.98 9.11 -37.89 -0.35 -12.32 16 17 H 0.10 2.94 8.06 -52.48 -0.42 2.52 16 18 C 0.11 2.83 5.48 -17.33 -0.10 2.74 16 19 N -0.81 -22.00 13.93 55.55 0.77 -21.23 16 20 Si 0.91 22.25 26.47 -169.99 -4.50 17.76 16 21 H -0.25 -5.91 5.42 56.52 0.31 -5.61 16 22 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.87 7.10 56.52 0.40 -6.47 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.11 1.96 6.43 -52.49 -0.34 1.62 16 28 H 0.11 1.94 7.25 -52.48 -0.38 1.56 16 29 H 0.15 2.13 7.61 -52.49 -0.40 1.73 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.52 6.54 -51.92 -0.34 1.18 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.12 2.72 6.00 -51.93 -0.31 2.41 16 36 H 0.28 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -30.50 305.57 -5.87 -36.37 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.33 Total: 1.53 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.27 Total: -16.03 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.73 Total: -34.17 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.11 Total: -10.06 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.50 Total: 17.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.50 -5.87 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242405196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.446 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds