Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35546 * 117.00106 * 2 1 4 4 C 1.39149 * 120.47630 * 359.95487 * 3 2 1 5 5 C 1.38284 * 118.64792 * 180.02562 * 4 3 2 6 6 C 1.40162 * 119.57263 * 0.02562 * 5 4 3 7 7 C 1.48169 * 119.52605 * 179.97438 * 6 5 4 8 8 C 1.46781 * 127.13062 * 353.31645 * 7 6 5 9 9 C 1.34327 * 106.01136 * 179.82966 * 8 7 6 10 10 C 1.50701 * 125.48140 * 180.12069 * 9 8 7 11 11 O 1.34181 * 109.03717 * 0.43650 * 9 8 7 12 12 C 1.33989 * 110.78580 * 359.70979 * 11 9 8 13 13 C 1.50698 * 125.78455 * 179.97438 * 12 11 9 14 14 N 1.32210 * 120.95114 * 0.02562 * 6 5 4 15 15 C 1.33629 * 121.44504 * 359.97438 * 14 6 5 16 16 C 1.40961 * 119.83134 * 179.72777 * 15 14 6 17 17 H 1.08003 * 120.00654 * 135.68950 * 16 15 14 18 18 C 1.40004 * 119.99521 * 315.69108 * 16 15 14 19 19 N 1.30797 * 119.99847 * 163.79647 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 343.79128 * 18 16 15 21 21 H 1.48499 * 109.46628 * 95.78270 * 20 18 16 22 22 H 1.48497 * 109.47213 * 215.78181 * 20 18 16 23 23 H 1.48493 * 109.47070 * 335.78454 * 20 18 16 24 24 H 1.08996 * 109.47044 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46963 * 300.00482 * 1 2 3 26 26 H 1.08999 * 109.47136 * 59.99706 * 1 2 3 27 27 H 1.07996 * 120.67862 * 0.04471 * 4 3 2 28 28 H 1.08007 * 120.21620 * 179.97438 * 5 4 3 29 29 H 1.07999 * 126.99896 * 0.02562 * 8 7 6 30 30 H 1.09000 * 109.46905 * 180.34688 * 10 9 8 31 31 H 1.09001 * 109.47252 * 300.34044 * 10 9 8 32 32 H 1.09004 * 109.47009 * 60.34342 * 10 9 8 33 33 H 1.09010 * 109.46827 * 276.87216 * 13 12 11 34 34 H 1.08992 * 109.47615 * 36.86949 * 13 12 11 35 35 H 1.08996 * 109.46857 * 156.87841 * 13 12 11 36 36 H 0.96995 * 119.99747 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 1.2963 2.3810 -0.0009 5 6 1.9631 3.5924 -0.0015 6 6 3.3646 3.6106 -0.0016 7 6 4.0780 4.9092 -0.0027 8 6 3.4860 6.2453 -0.1399 9 6 4.5102 7.1123 -0.0806 10 6 4.3934 8.6119 -0.1743 11 8 5.6548 6.4281 0.0687 12 6 5.4180 5.1102 0.1174 13 6 6.4597 4.0331 0.2774 14 7 4.0592 2.4857 -0.0017 15 6 3.4555 1.2936 -0.0012 16 6 4.2295 0.1155 -0.0072 17 1 3.9699 -0.7047 0.6458 18 6 5.3350 0.0087 -0.8596 19 7 6.2309 -0.9221 -0.6552 20 14 5.5305 1.1955 -2.2888 21 1 6.4184 2.3151 -1.8846 22 1 6.1285 0.4825 -3.4461 23 1 4.2001 1.7324 -2.6719 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.2169 2.3462 -0.0010 28 1 1.4076 4.5187 -0.0026 29 1 2.4394 6.4832 -0.2606 30 1 5.3850 9.0588 -0.1018 31 1 3.9421 8.8822 -1.1290 32 1 3.7688 8.9793 0.6399 33 1 6.8976 3.8039 -0.6942 34 1 7.2399 4.3799 0.9548 35 1 5.9950 3.1363 0.6870 36 1 6.9966 -0.9963 -1.2459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242405196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = -19.587312 kcal Electronic energy + Delta-G solvation = -20797.140486 eV Core-core repulsion = 17633.295732 eV Total energy + Delta-G solvation = -3163.844754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.35391 -40.95889 -38.72406 -35.62088 -34.25859 -33.92199 -32.88198 -31.20137 -30.24725 -28.24735 -27.46987 -25.64208 -23.85999 -23.44373 -21.93435 -20.36105 -19.56059 -18.60439 -17.40641 -17.35520 -17.28795 -16.90655 -16.42059 -15.77177 -15.11519 -14.88052 -14.70043 -14.56261 -14.28159 -14.26621 -14.02148 -13.65862 -13.46822 -13.45217 -13.15152 -13.04984 -12.65929 -12.60694 -12.41432 -12.27124 -12.03864 -11.84016 -11.19349 -10.65055 -10.27164 -9.96361 -9.42764 -8.78729 -8.58128 -6.50128 0.16120 0.62030 0.96525 1.29368 1.35138 1.44067 1.75079 1.94620 2.23069 2.65258 2.71874 3.42066 3.57419 3.82296 3.92781 4.15172 4.22517 4.30060 4.45598 4.45874 4.47742 4.53394 4.64631 4.70777 4.73176 4.78991 4.80257 4.90692 5.05069 5.15912 5.27998 5.36962 5.38710 5.53889 5.62071 5.83197 6.21341 6.27690 6.31725 6.78901 6.93028 7.61412 8.30641 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.007529 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.476926 B = 3718.183822 C = 5019.900245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C -0.003 4.003 4 C -0.146 4.146 5 C -0.209 4.209 6 C 0.156 3.844 7 C -0.157 4.157 8 C -0.205 4.205 9 C -0.018 4.018 10 C -0.066 4.066 11 O -0.191 6.191 12 C 0.008 3.992 13 C -0.078 4.078 14 N -0.521 5.521 15 C 0.228 3.772 16 C -0.467 4.467 17 H 0.064 0.936 18 C 0.077 3.923 19 N -0.853 5.853 20 Si 0.959 3.041 21 H -0.243 1.243 22 H -0.282 1.282 23 H -0.289 1.289 24 H 0.113 0.887 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.175 0.825 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 15.020 -0.693 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C -0.052 4.052 4 C -0.170 4.170 5 C -0.230 4.230 6 C 0.019 3.981 7 C -0.159 4.159 8 C -0.224 4.224 9 C -0.066 4.066 10 C -0.122 4.122 11 O -0.089 6.089 12 C -0.043 4.043 13 C -0.134 4.134 14 N -0.238 5.238 15 C 0.097 3.903 16 C -0.502 4.502 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.482 5.482 20 Si 0.784 3.216 21 H -0.168 1.168 22 H -0.209 1.209 23 H -0.215 1.215 24 H 0.131 0.869 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.192 0.808 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.642 14.812 -0.695 15.866 hybrid contribution -1.046 -0.356 -0.452 1.193 sum -6.688 14.456 -1.147 15.969 Atomic orbital electron populations 1.23256 0.77817 1.04880 1.01631 1.86016 1.22165 1.26789 1.89131 1.20616 0.93447 0.85191 1.05922 1.21557 1.00594 0.91162 1.03713 1.21594 0.93261 0.98361 1.09778 1.19264 0.90961 0.90088 0.97791 1.20056 0.92608 0.92598 1.10660 1.22686 1.01042 0.89149 1.09525 1.23108 0.82228 0.96821 1.04484 1.20504 1.04763 0.81728 1.05190 1.83711 1.35474 1.17529 1.72212 1.22755 0.95821 0.81915 1.03839 1.20604 0.95649 0.94101 1.03025 1.68201 1.38745 0.97111 1.19762 1.18183 0.87848 0.91210 0.93042 1.18723 1.09795 0.99057 1.22578 0.91782 1.26276 0.92320 0.95499 0.99685 1.69700 1.09284 1.32484 1.36728 0.85524 0.78989 0.79415 0.77644 1.16772 1.20893 1.21450 0.86886 0.92102 0.92231 0.82555 0.83558 0.80790 0.89841 0.87884 0.87686 0.90945 0.89429 0.88642 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.83 113.37 1.11 1.67 16 2 O -0.33 -14.59 9.94 -88.51 -0.88 -15.47 16 3 C 0.00 -0.15 6.74 23.26 0.16 0.00 16 4 C -0.15 -5.67 9.11 22.50 0.21 -5.47 16 5 C -0.21 -8.13 9.65 22.75 0.22 -7.91 16 6 C 0.16 7.05 6.76 42.19 0.29 7.33 16 7 C -0.16 -6.30 6.25 -18.92 -0.12 -6.42 16 8 C -0.20 -6.25 10.41 23.61 0.25 -6.01 16 9 C -0.02 -0.49 7.29 24.79 0.18 -0.31 16 10 C -0.07 -1.00 10.41 71.24 0.74 -0.26 16 11 O -0.19 -6.48 10.54 1.68 0.02 -6.46 16 12 C 0.01 0.30 7.37 25.17 0.19 0.49 16 13 C -0.08 -3.03 9.88 71.24 0.70 -2.33 16 14 N -0.52 -26.76 5.22 -177.86 -0.93 -27.69 16 15 C 0.23 12.36 5.29 40.31 0.21 12.57 16 16 C -0.47 -27.69 9.11 23.37 0.21 -27.48 16 17 H 0.06 4.10 8.06 -2.91 -0.02 4.08 16 18 C 0.08 4.40 5.48 85.28 0.47 4.87 16 19 N -0.85 -48.93 13.93 21.84 0.30 -48.63 16 20 Si 0.96 47.60 26.47 68.60 1.82 49.42 16 21 H -0.24 -11.43 5.42 99.48 0.54 -10.89 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.29 -15.28 7.10 99.48 0.71 -14.57 16 24 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.06 1.54 7.69 -2.38 -0.02 1.52 16 26 H 0.06 1.53 7.69 -2.39 -0.02 1.51 16 27 H 0.16 4.65 6.43 -2.91 -0.02 4.63 16 28 H 0.15 4.52 7.25 -2.91 -0.02 4.50 16 29 H 0.17 4.17 7.61 -2.91 -0.02 4.15 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 2.85 6.54 -2.38 -0.02 2.83 16 34 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.10 4.35 6.00 -2.39 -0.01 4.33 16 36 H 0.29 15.05 8.29 -92.71 -0.77 14.28 16 Total: -1.00 -71.27 305.57 6.08 -65.20 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.93 Total: 12.89 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.81 Total: -29.25 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -0.62 Total: -76.32 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.86 Total: -21.93 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.82 Total: 49.42 kcal Total: -71.27 6.08 -65.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242405196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.609 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds