Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30168 * 126.80239 * 2 1 4 4 O 1.20920 * 111.60539 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56795 * 359.76275 * 4 3 2 6 6 C 1.50701 * 126.77995 * 180.28869 * 5 4 3 7 7 C 1.35450 * 106.44620 * 0.38019 * 5 4 3 8 8 C 1.50698 * 128.00952 * 179.91188 * 7 5 4 9 9 C 1.50708 * 109.47124 * 269.68083 * 8 7 5 10 10 C 1.38119 * 120.03145 * 264.95479 * 9 8 7 11 11 C 1.38283 * 120.06339 * 180.02562 * 10 9 8 12 12 C 1.38315 * 120.14494 * 0.02562 * 11 10 9 13 13 C 1.38086 * 120.06517 * 0.02563 * 12 11 10 14 14 C 1.38859 * 120.03557 * 84.99898 * 9 8 7 15 15 O 1.35756 * 120.06687 * 359.95685 * 14 9 8 16 16 C 1.34830 * 116.99569 * 174.48928 * 15 14 9 17 17 H 1.07994 * 120.00245 * 5.37753 * 16 15 14 18 18 C 1.38652 * 119.99573 * 185.38041 * 16 15 14 19 19 N 1.31561 * 120.00249 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47136 * 59.99939 * 20 18 16 22 22 H 1.48498 * 109.47220 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47323 * 299.99866 * 20 18 16 24 24 H 1.09003 * 109.46655 * 269.96579 * 1 2 3 25 25 H 1.08997 * 109.47532 * 29.96846 * 1 2 3 26 26 H 1.09002 * 109.47337 * 149.97196 * 1 2 3 27 27 H 1.09004 * 109.47167 * 270.10979 * 6 5 4 28 28 H 1.09000 * 109.47334 * 30.11128 * 6 5 4 29 29 H 1.09000 * 109.47377 * 150.11053 * 6 5 4 30 30 H 1.08992 * 109.47245 * 149.68261 * 8 7 5 31 31 H 1.08997 * 109.47185 * 29.67410 * 8 7 5 32 32 H 1.07994 * 119.97218 * 0.02562 * 10 9 8 33 33 H 1.08007 * 119.92829 * 180.27772 * 11 10 9 34 34 H 1.07999 * 119.97001 * 179.97438 * 12 11 10 35 35 H 1.07999 * 120.03338 * 179.97438 * 13 12 11 36 36 H 0.97001 * 119.99596 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9021 -1.3696 0.0113 7 6 2.3539 -1.1321 -0.0006 8 6 1.9590 -2.5864 -0.0001 9 6 1.8262 -3.0714 -1.4208 10 6 0.5898 -3.0773 -2.0365 11 6 0.4671 -3.5227 -3.3399 12 6 1.5811 -3.9639 -4.0310 13 6 2.8197 -3.9613 -3.4206 14 6 2.9465 -3.5135 -2.1119 15 8 4.1631 -3.5088 -1.5095 16 6 5.1873 -4.0562 -2.1944 17 1 5.0391 -4.3937 -3.2094 18 6 6.4310 -4.1859 -1.5953 19 7 6.6118 -3.7743 -0.3589 20 14 7.8500 -4.9449 -2.5439 21 1 8.1202 -4.1376 -3.7606 22 1 9.0623 -4.9683 -1.6866 23 1 7.4957 -6.3319 -2.9388 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5143 27 1 5.2201 -1.5550 -1.0147 28 1 5.6636 -0.7852 0.5277 29 1 4.7627 -2.3203 0.5259 30 1 1.0054 -2.7038 0.5144 31 1 2.7232 -3.1702 0.5130 32 1 -0.2819 -2.7339 -1.4995 33 1 -0.5000 -3.5222 -3.8207 34 1 1.4820 -4.3115 -5.0487 35 1 3.6891 -4.3063 -3.9605 36 1 7.4819 -3.8654 0.0602 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250070356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = 45.401499 kcal Electronic energy + Delta-G solvation = -21329.056464 eV Core-core repulsion = 18168.029836 eV Total energy + Delta-G solvation = -3161.026628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.26783 -39.21894 -36.50210 -35.01049 -33.06596 -32.38770 -31.12703 -29.07570 -28.28064 -27.29116 -25.76195 -25.34602 -21.84168 -21.49243 -20.27557 -19.41117 -17.98669 -17.08973 -16.83927 -16.14581 -14.97909 -14.74277 -14.41592 -14.08583 -13.68819 -13.39716 -13.25881 -13.12861 -12.80255 -12.48561 -12.43281 -12.10923 -11.92902 -11.73480 -11.50743 -11.19216 -11.14344 -10.87113 -10.78900 -10.65779 -10.44473 -10.23943 -9.50521 -9.23229 -8.88287 -8.35444 -8.06415 -7.23372 -6.52181 -4.09444 2.05717 2.17961 2.35199 2.81607 3.10402 3.11828 3.13306 3.82969 3.92261 4.52493 4.69224 5.01632 5.04204 5.18864 5.42556 5.58899 5.63441 5.69426 5.71041 5.81534 5.86058 6.00765 6.08439 6.20503 6.31050 6.33509 6.47815 6.58504 6.66925 6.68727 6.84802 6.93719 7.08291 7.21945 7.33888 7.39428 7.43355 7.80499 7.96412 8.86637 8.95296 9.62691 10.63976 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.007791 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.496117 B = 3593.113180 C = 4924.203984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.019 3.981 3 N -0.387 5.387 4 O 0.079 5.921 5 C -0.006 4.006 6 C -0.051 4.051 7 C -0.199 4.199 8 C 0.018 3.982 9 C -0.153 4.153 10 C -0.073 4.073 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.232 4.232 14 C 0.157 3.843 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.088 0.912 18 C 0.046 3.954 19 N -0.860 5.860 20 Si 0.936 3.064 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.272 1.272 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 1.485 -0.111 7.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.140 4.140 3 N -0.096 5.096 4 O 0.017 5.983 5 C -0.069 4.069 6 C -0.108 4.108 7 C -0.204 4.204 8 C -0.020 4.020 9 C -0.154 4.154 10 C -0.091 4.091 11 C -0.230 4.230 12 C -0.096 4.096 13 C -0.251 4.251 14 C 0.104 3.896 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.105 0.895 18 C -0.159 4.159 19 N -0.495 5.495 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.198 1.198 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.911 2.903 0.287 7.502 hybrid contribution 0.619 -1.207 -0.797 1.573 sum -6.293 1.696 -0.510 6.537 Atomic orbital electron populations 1.20109 0.86826 1.03333 1.02597 1.23324 0.98372 0.89098 1.03199 1.73720 0.89655 1.24324 1.21924 1.84722 1.21303 1.23646 1.68602 1.25044 0.99759 0.82472 0.99625 1.20493 0.86826 0.97692 1.05832 1.20814 0.91503 0.97064 1.10979 1.18496 1.01479 0.88303 0.93698 1.18820 0.91619 1.08693 0.96256 1.20546 0.95462 0.98468 0.94672 1.20573 0.97859 1.08798 0.95809 1.20757 0.92624 0.97871 0.98391 1.21170 0.98180 1.09610 0.96166 1.19145 0.86677 0.92826 0.90957 1.84022 1.12318 1.68498 1.42486 1.21234 0.87438 1.40369 0.97876 0.89481 1.25107 0.97636 0.97042 0.96082 1.69938 1.24374 1.43653 1.11579 0.85851 0.79666 0.79447 0.78946 1.19753 1.20355 1.19771 0.90785 0.91164 0.90185 0.88037 0.92479 0.86836 0.91241 0.89400 0.87234 0.87753 0.87660 0.85573 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.39 36.00 0.37 -0.58 16 2 C 0.02 0.34 7.33 -82.10 -0.60 -0.26 16 3 N -0.39 -7.61 12.07 33.42 0.40 -7.20 16 4 O 0.08 1.59 11.20 17.18 0.19 1.78 16 5 C -0.01 -0.12 7.49 -35.30 -0.26 -0.39 16 6 C -0.05 -1.06 7.65 36.01 0.28 -0.78 16 7 C -0.20 -3.81 5.56 -104.42 -0.58 -4.39 16 8 C 0.02 0.33 5.40 -29.03 -0.16 0.17 16 9 C -0.15 -3.01 5.13 -104.43 -0.54 -3.55 16 10 C -0.07 -1.27 9.63 -39.61 -0.38 -1.65 16 11 C -0.21 -3.61 10.04 -39.54 -0.40 -4.00 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -4.85 9.17 -39.39 -0.36 -5.21 16 14 C 0.16 3.51 6.62 -39.11 -0.26 3.25 16 15 O -0.17 -4.12 5.50 0.03 0.00 -4.12 16 16 C -0.39 -9.77 9.27 30.89 0.29 -9.48 16 17 H 0.09 2.09 5.20 -52.49 -0.27 1.81 16 18 C 0.05 1.11 5.49 -17.51 -0.10 1.01 16 19 N -0.86 -21.33 11.73 55.48 0.65 -20.68 16 20 Si 0.94 19.07 29.55 -169.99 -5.02 14.04 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.99 6.95 -51.93 -0.36 0.63 16 27 H 0.10 2.35 6.74 -51.93 -0.35 2.00 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.11 2.52 6.19 -51.93 -0.32 2.20 16 30 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.09 1.73 6.99 -51.93 -0.36 1.37 16 32 H 0.11 1.58 6.92 -52.49 -0.36 1.21 16 33 H 0.10 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 36 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 302.12 15.07 4.55 4.55 Total: -1.00 -26.40 302.12 -6.31 -32.71 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.99 Total: 6.60 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -3.10 Total: -27.69 kcal Atomic # 7 Polarization: -28.94 SS G_CDS: 1.05 Total: -27.88 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.19 Total: -2.34 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.40 -6.31 -32.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250070356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.115 kcal (2) G-P(sol) polarization free energy of solvation -26.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds