Wall clock time and date at job start Mon Mar 30 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30174 * 126.80398 * 2 1 4 4 O 1.20921 * 111.60360 * 180.24970 * 3 2 1 5 5 C 1.34036 * 111.56698 * 359.74740 * 4 3 2 6 6 C 1.50705 * 126.77370 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44930 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00833 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47030 * 90.00054 * 8 7 5 10 10 C 1.38295 * 119.93297 * 89.99850 * 9 8 7 11 11 C 1.38099 * 120.06865 * 180.25412 * 10 9 8 12 12 C 1.38882 * 119.93206 * 359.47410 * 11 10 9 13 13 O 1.35746 * 120.07145 * 180.25590 * 12 11 10 14 14 C 1.34834 * 117.00340 * 174.73672 * 13 12 11 15 15 H 1.08003 * 119.99155 * 5.05417 * 14 13 12 16 16 C 1.38652 * 120.00189 * 185.05311 * 14 13 12 17 17 N 1.31551 * 120.00092 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47177 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46962 * 120.00033 * 18 16 14 21 21 H 1.48499 * 109.47083 * 240.00124 * 18 16 14 22 22 C 1.38876 * 119.85943 * 0.52538 * 12 11 10 23 23 C 1.38100 * 119.93177 * 359.72571 * 22 12 11 24 24 H 1.09006 * 109.47320 * 270.16294 * 1 2 3 25 25 H 1.09000 * 109.47398 * 30.16087 * 1 2 3 26 26 H 1.08999 * 109.47242 * 150.16659 * 1 2 3 27 27 H 1.08996 * 109.47122 * 270.00167 * 6 5 4 28 28 H 1.08995 * 109.46800 * 30.00569 * 6 5 4 29 29 H 1.09001 * 109.46967 * 150.00260 * 6 5 4 30 30 H 1.08996 * 109.47065 * 330.00302 * 8 7 5 31 31 H 1.09003 * 109.47013 * 209.99518 * 8 7 5 32 32 H 1.08000 * 119.96836 * 359.97438 * 10 9 8 33 33 H 1.08002 * 120.03655 * 179.72759 * 11 10 9 34 34 H 0.97006 * 120.00187 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.03796 * 179.70626 * 22 12 11 36 36 H 1.07997 * 119.96864 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7252 -0.0049 5 6 3.6024 -0.6068 -0.0034 6 6 4.9021 -1.3696 -0.0087 7 6 2.3539 -1.1321 0.0038 8 6 1.9590 -2.5864 0.0078 9 6 1.8349 -3.0694 1.4299 10 6 0.6214 -2.9764 2.0868 11 6 0.5058 -3.4133 3.3918 12 6 1.6069 -3.9564 4.0408 13 8 1.4951 -4.3915 5.3218 14 6 2.5698 -5.0066 5.8555 15 1 3.4928 -5.0617 5.2973 16 6 2.4900 -5.5682 7.1206 17 7 1.3655 -5.5014 7.8002 18 14 3.9787 -6.4209 7.8596 19 1 5.1107 -6.3604 6.9003 20 1 4.3634 -5.7397 9.1219 21 1 3.6458 -7.8398 8.1443 22 6 2.8241 -4.0484 3.3785 23 6 2.9346 -3.6050 2.0753 24 1 -0.3634 0.0029 1.0277 25 1 -0.3634 0.8885 -0.5163 26 1 -0.3634 -0.8915 -0.5112 27 1 5.2103 -1.5552 -1.0376 28 1 5.6685 -0.7851 0.5003 29 1 4.7676 -2.3202 0.5074 30 1 2.7200 -3.1709 -0.5092 31 1 1.0022 -2.7045 -0.5008 32 1 -0.2356 -2.5576 1.5803 33 1 -0.4410 -3.3364 3.9057 34 1 1.3098 -5.8940 8.6855 35 1 3.6834 -4.4660 3.8820 36 1 3.8810 -3.6759 1.5597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250070744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:59 Heat of formation + Delta-G solvation = 24.544243 kcal Electronic energy + Delta-G solvation = -20173.928501 eV Core-core repulsion = 17011.997435 eV Total energy + Delta-G solvation = -3161.931066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.82494 -40.77547 -38.62763 -36.25173 -34.63540 -34.23138 -32.06136 -31.77112 -29.57527 -28.87370 -27.66200 -26.61024 -23.60065 -23.17122 -21.76641 -20.95562 -19.81251 -18.86465 -18.58535 -17.82626 -16.44490 -16.35365 -15.99941 -15.56762 -15.28078 -15.14613 -14.92977 -14.50429 -14.24452 -14.19695 -13.92389 -13.71002 -13.60031 -13.36995 -13.19391 -12.91128 -12.80366 -12.47894 -12.32178 -12.19591 -12.08864 -11.75796 -11.13881 -10.79537 -10.73303 -9.96522 -9.75624 -8.87876 -8.46690 -6.14737 0.53951 0.62097 0.73275 1.32823 1.35492 1.44303 1.53840 2.18055 2.30104 2.83650 3.16730 3.35917 3.54444 3.62716 3.92339 4.10122 4.16595 4.21915 4.27872 4.46905 4.61688 4.65527 4.67119 4.73217 4.75807 4.85191 4.93765 4.94882 5.00320 5.09562 5.17205 5.22783 5.32450 5.41453 5.60515 5.74267 5.83722 6.04106 6.25937 6.98360 7.38070 7.80270 8.76988 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.004134 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.014239 B = 6770.705252 C = 7281.342664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 N -0.407 5.407 4 O 0.075 5.925 5 C -0.032 4.032 6 C -0.077 4.077 7 C -0.199 4.199 8 C 0.020 3.980 9 C -0.153 4.153 10 C -0.062 4.062 11 C -0.207 4.207 12 C 0.109 3.891 13 O -0.236 6.236 14 C -0.412 4.412 15 H 0.103 0.897 16 C -0.025 4.025 17 N -0.923 5.923 18 Si 1.019 2.981 19 H -0.249 1.249 20 H -0.270 1.270 21 H -0.268 1.268 22 C -0.242 4.242 23 C -0.063 4.063 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.272 0.728 35 H 0.119 0.881 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 5.260 -18.521 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 N -0.116 5.116 4 O 0.014 5.986 5 C -0.095 4.095 6 C -0.134 4.134 7 C -0.203 4.203 8 C -0.017 4.017 9 C -0.154 4.154 10 C -0.079 4.079 11 C -0.226 4.226 12 C 0.059 3.941 13 O -0.143 6.143 14 C -0.488 4.488 15 H 0.120 0.880 16 C -0.222 4.222 17 N -0.561 5.561 18 Si 0.838 3.162 19 H -0.172 1.172 20 H -0.195 1.195 21 H -0.193 1.193 22 C -0.261 4.261 23 C -0.080 4.080 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.568 6.538 -18.178 19.851 hybrid contribution 0.159 -0.930 1.126 1.469 sum 4.727 5.608 -17.052 18.563 Atomic orbital electron populations 1.20321 0.84507 1.04890 1.03827 1.23979 1.00181 0.88643 1.01505 1.73792 0.89926 1.25305 1.22618 1.84718 1.21446 1.23817 1.68634 1.24918 0.99754 0.83096 1.01772 1.20609 0.88554 0.98619 1.05629 1.21145 0.91563 0.97842 1.09746 1.18720 1.04184 0.86917 0.91925 1.19626 0.93440 1.04961 0.97337 1.20918 0.98333 0.96687 0.91999 1.20466 0.96952 1.08354 0.96858 1.19988 0.95252 0.93945 0.84956 1.83941 1.40352 1.67239 1.22743 1.21874 0.90865 1.34905 1.01175 0.87970 1.26598 1.02007 0.97713 0.95844 1.70194 1.28059 1.44835 1.13014 0.84529 0.75842 0.77506 0.78329 1.17219 1.19543 1.19335 1.21270 0.97248 1.09897 0.97698 1.21038 0.99000 0.95494 0.92513 0.90221 0.90213 0.87717 0.86948 0.89123 0.88320 0.87745 0.88191 0.83501 0.87292 0.91911 0.86370 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.39 71.24 0.74 -0.74 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 N -0.41 -12.04 12.07 -49.56 -0.60 -12.64 16 4 O 0.08 2.06 11.20 71.67 0.80 2.86 16 5 C -0.03 -0.72 7.49 25.04 0.19 -0.53 16 6 C -0.08 -1.05 10.25 71.24 0.73 -0.32 16 7 C -0.20 -4.59 5.56 -19.74 -0.11 -4.70 16 8 C 0.02 0.39 5.59 29.10 0.16 0.55 16 9 C -0.15 -4.31 5.12 -19.83 -0.10 -4.41 16 10 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 11 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 12 C 0.11 5.36 6.65 22.58 0.15 5.51 16 13 O -0.24 -14.25 9.76 -22.74 -0.22 -14.47 16 14 C -0.41 -23.94 9.49 67.92 0.64 -23.30 16 15 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 17 N -0.92 -56.87 13.67 21.61 0.30 -56.57 16 18 Si 1.02 42.61 29.55 68.60 2.03 44.64 16 19 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 C -0.24 -10.14 9.17 22.39 0.21 -9.94 16 23 C -0.06 -1.96 9.60 22.25 0.21 -1.74 16 24 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.44 7.65 -2.39 -0.02 1.42 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.27 6.23 -2.39 -0.01 1.25 16 30 H 0.10 1.55 8.02 -2.39 -0.02 1.53 16 31 H 0.10 1.58 7.59 -2.39 -0.02 1.56 16 32 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 35 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 36 H 0.15 3.35 6.35 -2.91 -0.02 3.33 16 Total: -1.00 -75.64 313.04 7.46 -68.18 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.11 Total: 18.03 kcal Atomic # 6 Polarization: -54.08 SS G_CDS: 4.05 Total: -50.03 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -0.30 Total: -69.21 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.58 Total: -11.61 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -75.64 7.46 -68.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250070744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.728 kcal (2) G-P(sol) polarization free energy of solvation -75.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds