Wall clock time and date at job start Mon Mar 30 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99744 * 2 1 4 4 H 1.48499 * 109.46709 * 269.99637 * 3 2 1 5 5 H 1.48494 * 109.47198 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.47067 * 150.00052 * 3 2 1 7 7 C 1.37879 * 120.00513 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85377 * 180.02562 * 7 2 1 9 9 C 1.53232 * 108.53242 * 128.63318 * 8 7 2 10 10 C 1.52953 * 109.40525 * 54.63102 * 9 8 7 11 11 H 1.09005 * 109.35482 * 56.46865 * 10 9 8 12 12 N 1.46902 * 109.41460 * 176.29396 * 10 9 8 13 13 C 1.46907 * 110.99997 * 206.97012 * 12 10 9 14 14 H 1.09002 * 109.63899 * 326.12993 * 13 12 10 15 15 C 1.53875 * 109.64405 * 86.55580 * 13 12 10 16 16 C 1.54976 * 106.65339 * 167.15174 * 15 13 12 17 17 S 1.83289 * 102.48176 * 317.38169 * 16 15 13 18 18 O 1.42095 * 109.35217 * 269.90197 * 17 16 15 19 19 O 1.42101 * 109.35276 * 136.69904 * 17 16 15 20 20 C 1.54162 * 109.64404 * 205.69657 * 13 12 10 21 21 C 1.52964 * 109.81720 * 296.39936 * 10 9 8 22 22 C 1.51269 * 120.84399 * 0.02562 * 7 2 1 23 23 H 0.97001 * 120.00041 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.63018 * 248.34954 * 8 7 2 25 25 H 1.09001 * 109.62362 * 8.92629 * 8 7 2 26 26 H 1.09001 * 109.48226 * 294.64962 * 9 8 7 27 27 H 1.09000 * 109.48087 * 174.61213 * 9 8 7 28 28 H 1.00902 * 110.99593 * 330.91598 * 12 10 9 29 29 H 1.09000 * 110.03018 * 286.31895 * 15 13 12 30 30 H 1.08997 * 110.03409 * 47.74742 * 15 13 12 31 31 H 1.09005 * 110.75672 * 199.17515 * 16 15 13 32 32 H 1.09005 * 111.07116 * 75.73426 * 16 15 13 33 33 H 1.09002 * 110.32290 * 331.14256 * 20 13 12 34 34 H 1.09001 * 110.31915 * 93.33624 * 20 13 12 35 35 H 1.09000 * 109.47553 * 183.57775 * 21 10 9 36 36 H 1.08998 * 109.47767 * 303.60600 * 21 10 9 37 37 H 1.09002 * 109.62404 * 111.65840 * 22 7 2 38 38 H 1.08997 * 109.78767 * 351.17825 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 6 3.5172 -1.2164 0.0011 9 6 3.9903 -2.1303 1.1364 10 6 3.3396 -3.5064 0.9857 11 1 3.5741 -3.9110 0.0011 12 7 3.8606 -4.4088 2.0212 13 6 3.8013 -5.8083 1.5782 14 1 2.9245 -5.9561 0.9477 15 6 5.0735 -6.1539 0.7846 16 6 5.1000 -7.6965 0.6379 17 16 4.5994 -8.2620 2.3079 18 8 5.7564 -8.4236 3.1168 19 8 3.6652 -9.3257 2.1846 20 6 3.7199 -6.7374 2.8057 21 6 1.8225 -3.3819 1.1362 22 6 1.2678 -2.5151 0.0005 23 1 -0.4850 0.8401 0.0004 24 1 3.8781 -1.6008 -0.9528 25 1 3.8982 -0.2076 0.1604 26 1 3.7055 -1.6965 2.0950 27 1 5.0744 -2.2340 1.0918 28 1 4.8002 -4.1525 2.2848 29 1 5.0374 -5.6880 -0.2001 30 1 5.9558 -5.8140 1.3269 31 1 6.1044 -8.0444 0.3965 32 1 4.3853 -8.0310 -0.1142 33 1 4.2138 -6.2778 3.6618 34 1 2.6797 -6.9609 3.0429 35 1 1.3704 -4.3727 1.0913 36 1 1.5891 -2.9187 2.0948 37 1 1.4208 -3.0196 -0.9535 38 1 0.2029 -2.3436 0.1574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254318255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:45 Heat of formation + Delta-G solvation = -83.694657 kcal Electronic energy + Delta-G solvation = -19675.954352 eV Core-core repulsion = 16644.773646 eV Total energy + Delta-G solvation = -3031.180706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.56713 -37.18118 -36.28138 -36.03993 -33.04941 -31.23633 -29.68296 -29.53184 -26.62424 -24.44313 -22.01265 -21.79638 -20.62465 -19.34062 -18.95701 -17.04634 -16.72635 -16.16206 -15.83248 -15.19676 -14.79470 -14.47161 -14.28391 -13.74728 -13.48029 -13.02847 -12.73241 -12.55928 -12.39207 -12.30822 -12.27527 -12.15468 -12.01944 -11.47006 -11.32171 -11.00963 -10.86037 -10.73190 -10.60251 -10.40898 -10.27273 -9.96125 -9.49503 -8.95285 -8.71707 -8.50725 -8.17007 -6.12913 -4.04213 -0.10797 2.35141 3.23666 3.31696 3.32801 3.42457 3.81141 4.16458 4.25264 4.34527 4.40995 4.64706 4.70107 4.83604 5.14510 5.27200 5.34628 5.48040 5.58933 5.66368 5.76384 5.84267 6.10097 6.46086 6.55743 6.71347 6.78400 6.80387 7.00539 7.05443 7.34812 7.43752 7.55518 7.63357 7.75391 7.83196 8.35941 8.94012 9.51169 10.96632 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.045885 B = 0.004020 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.079399 B = 6963.894859 C = 7209.596616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.487 4.487 8 C -0.019 4.019 9 C -0.108 4.108 10 C 0.097 3.903 11 H 0.037 0.963 12 N -0.675 5.675 13 C 0.095 3.905 14 H 0.101 0.899 15 C -0.153 4.153 16 C -0.585 4.585 17 S 2.385 3.615 18 O -0.942 6.942 19 O -0.944 6.944 20 C -0.575 4.575 21 C -0.094 4.094 22 C 0.008 3.992 23 H 0.264 0.736 24 H 0.014 0.986 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.337 0.663 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.000 1.000 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.636 -11.805 2.157 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.506 4.506 8 C -0.057 4.057 9 C -0.147 4.147 10 C -0.011 4.011 11 H 0.055 0.945 12 N -0.305 5.305 13 C -0.018 4.018 14 H 0.119 0.881 15 C -0.193 4.193 16 C -0.715 4.715 17 S 2.568 3.432 18 O -0.939 6.939 19 O -0.941 6.941 20 C -0.706 4.706 21 C -0.132 4.132 22 C -0.030 4.030 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.156 0.844 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.018 0.982 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.017 -12.572 2.999 15.759 hybrid contribution 1.021 1.646 -1.048 2.202 sum 10.038 -10.926 1.951 14.965 Atomic orbital electron populations 1.69835 1.06159 1.26918 1.49815 1.24855 0.94712 0.98556 0.94584 0.86692 0.79977 0.83411 0.78422 1.20492 1.21620 1.19004 1.20015 0.89231 0.91541 1.49813 1.19794 0.96933 0.95545 0.93410 1.21762 0.95844 0.95340 1.01734 1.21569 0.97172 0.91566 0.90785 0.94473 1.60784 1.27860 0.99804 1.42039 1.21947 0.97704 0.90548 0.91570 0.88086 1.23056 0.99960 0.92034 1.04266 1.30531 1.12371 1.05935 1.22663 1.09134 0.76598 0.78213 0.79205 1.93610 1.48492 1.85957 1.65883 1.93608 1.62992 1.51379 1.86078 1.30570 1.14769 1.17282 1.07998 1.21644 0.92261 0.97718 1.01613 1.19403 0.98719 0.92993 0.91844 0.92586 0.96733 0.94612 0.92110 0.95213 0.84362 0.88328 0.89437 0.84776 0.84453 0.83951 0.84122 0.95438 0.92560 0.98188 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 12.73 55.43 0.71 -24.49 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.53 27.53 -169.99 -4.68 15.85 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.88 6.10 56.52 0.34 -5.54 16 7 C -0.49 -12.37 5.51 -98.92 -0.55 -12.91 16 8 C -0.02 -0.41 5.59 -27.48 -0.15 -0.57 16 9 C -0.11 -2.01 5.22 -26.64 -0.14 -2.15 16 10 C 0.10 1.66 2.20 -67.75 -0.15 1.51 16 11 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 12 N -0.67 -9.10 6.05 -98.66 -0.60 -9.69 16 13 C 0.09 1.02 2.68 -66.65 -0.18 0.84 16 14 H 0.10 1.13 7.23 -51.93 -0.38 0.76 16 15 C -0.15 -1.31 5.76 -25.23 -0.15 -1.45 16 16 C -0.58 -4.21 7.31 38.20 0.28 -3.93 16 17 S 2.38 22.30 6.10 -107.50 -0.66 21.65 16 18 O -0.94 -11.89 18.14 -57.71 -1.05 -12.94 16 19 O -0.94 -12.16 18.15 -57.71 -1.05 -13.21 16 20 C -0.58 -5.26 6.93 37.76 0.26 -5.00 16 21 C -0.09 -1.89 5.45 -26.62 -0.15 -2.04 16 22 C 0.01 0.20 5.96 -27.47 -0.16 0.03 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.79 4.59 -51.93 -0.24 0.55 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 28 H 0.34 3.99 7.85 -39.29 -0.31 3.69 16 29 H 0.10 0.87 7.85 -51.93 -0.41 0.47 16 30 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.14 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.03 0.50 7.53 -51.93 -0.39 0.11 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 38 H 0.06 1.54 7.08 -51.93 -0.37 1.17 16 LS Contribution 306.03 15.07 4.61 4.61 Total: -1.00 -32.68 306.03 -9.76 -42.44 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.87 Total: -0.45 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.18 Total: -23.75 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.11 Total: -34.18 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -2.09 Total: -26.15 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.68 Total: 15.85 kcal Atomic # 16 Polarization: 22.30 SS G_CDS: -0.66 Total: 21.65 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.68 -9.76 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254318255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.256 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds