Wall clock time and date at job start Mon Mar 30 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99744 * 2 1 4 4 H 1.48499 * 109.46709 * 269.99637 * 3 2 1 5 5 H 1.48494 * 109.47198 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.47067 * 150.00052 * 3 2 1 7 7 C 1.37879 * 120.00513 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85377 * 180.02562 * 7 2 1 9 9 C 1.53232 * 108.53242 * 128.63318 * 8 7 2 10 10 C 1.52953 * 109.40525 * 54.63102 * 9 8 7 11 11 H 1.09005 * 109.35482 * 56.46865 * 10 9 8 12 12 N 1.46902 * 109.41460 * 176.29396 * 10 9 8 13 13 C 1.46907 * 110.99997 * 206.97012 * 12 10 9 14 14 H 1.09002 * 109.63899 * 326.12993 * 13 12 10 15 15 C 1.53875 * 109.64405 * 86.55580 * 13 12 10 16 16 C 1.54976 * 106.65339 * 167.15174 * 15 13 12 17 17 S 1.83289 * 102.48176 * 317.38169 * 16 15 13 18 18 O 1.42095 * 109.35217 * 269.90197 * 17 16 15 19 19 O 1.42101 * 109.35276 * 136.69904 * 17 16 15 20 20 C 1.54162 * 109.64404 * 205.69657 * 13 12 10 21 21 C 1.52964 * 109.81720 * 296.39936 * 10 9 8 22 22 C 1.51269 * 120.84399 * 0.02562 * 7 2 1 23 23 H 0.97001 * 120.00041 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.63018 * 248.34954 * 8 7 2 25 25 H 1.09001 * 109.62362 * 8.92629 * 8 7 2 26 26 H 1.09001 * 109.48226 * 294.64962 * 9 8 7 27 27 H 1.09000 * 109.48087 * 174.61213 * 9 8 7 28 28 H 1.00902 * 110.99593 * 330.91598 * 12 10 9 29 29 H 1.09000 * 110.03018 * 286.31895 * 15 13 12 30 30 H 1.08997 * 110.03409 * 47.74742 * 15 13 12 31 31 H 1.09005 * 110.75672 * 199.17515 * 16 15 13 32 32 H 1.09005 * 111.07116 * 75.73426 * 16 15 13 33 33 H 1.09002 * 110.32290 * 331.14256 * 20 13 12 34 34 H 1.09001 * 110.31915 * 93.33624 * 20 13 12 35 35 H 1.09000 * 109.47553 * 183.57775 * 21 10 9 36 36 H 1.08998 * 109.47767 * 303.60600 * 21 10 9 37 37 H 1.09002 * 109.62404 * 111.65840 * 22 7 2 38 38 H 1.08997 * 109.78767 * 351.17825 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 6 3.5172 -1.2164 0.0011 9 6 3.9903 -2.1303 1.1364 10 6 3.3396 -3.5064 0.9857 11 1 3.5741 -3.9110 0.0011 12 7 3.8606 -4.4088 2.0212 13 6 3.8013 -5.8083 1.5782 14 1 2.9245 -5.9561 0.9477 15 6 5.0735 -6.1539 0.7846 16 6 5.1000 -7.6965 0.6379 17 16 4.5994 -8.2620 2.3079 18 8 5.7564 -8.4236 3.1168 19 8 3.6652 -9.3257 2.1846 20 6 3.7199 -6.7374 2.8057 21 6 1.8225 -3.3819 1.1362 22 6 1.2678 -2.5151 0.0005 23 1 -0.4850 0.8401 0.0004 24 1 3.8781 -1.6008 -0.9528 25 1 3.8982 -0.2076 0.1604 26 1 3.7055 -1.6965 2.0950 27 1 5.0744 -2.2340 1.0918 28 1 4.8002 -4.1525 2.2848 29 1 5.0374 -5.6880 -0.2001 30 1 5.9558 -5.8140 1.3269 31 1 6.1044 -8.0444 0.3965 32 1 4.3853 -8.0310 -0.1142 33 1 4.2138 -6.2778 3.6618 34 1 2.6797 -6.9609 3.0429 35 1 1.3704 -4.3727 1.0913 36 1 1.5891 -2.9187 2.0948 37 1 1.4208 -3.0196 -0.9535 38 1 0.2029 -2.3436 0.1574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254318255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:45 Heat of formation + Delta-G solvation = -108.810988 kcal Electronic energy + Delta-G solvation = -19677.043478 eV Core-core repulsion = 16644.773646 eV Total energy + Delta-G solvation = -3032.269832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73673 -38.05825 -37.50501 -36.99323 -34.60377 -32.60511 -31.39079 -30.49547 -28.10907 -25.25856 -23.67433 -23.26465 -21.70078 -20.90757 -19.74141 -18.09735 -17.72556 -17.53712 -16.70390 -16.38586 -16.25629 -15.70054 -15.21679 -14.91595 -14.72581 -14.57836 -14.16995 -13.86248 -13.64111 -13.43456 -13.21739 -13.12978 -12.96621 -12.86020 -12.70489 -12.46391 -12.27857 -12.04278 -11.90789 -11.72812 -11.62073 -11.26862 -11.16578 -10.72641 -10.53550 -10.41699 -9.28890 -8.13667 -6.07601 -0.84527 1.40139 1.42594 1.50585 1.64388 2.42848 2.70192 3.02941 3.13447 3.32972 3.49580 3.67767 3.89520 4.07108 4.07302 4.19750 4.31085 4.60084 4.64191 4.73296 4.82659 4.86718 4.92462 5.04271 5.07527 5.10248 5.22404 5.27744 5.29957 5.33216 5.66961 5.68075 5.81789 5.95132 6.20546 6.39582 6.60814 7.00448 7.50239 8.97463 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.045885 B = 0.004020 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.079399 B = 6963.894859 C = 7209.596616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.494 4.494 8 C -0.023 4.023 9 C -0.104 4.104 10 C 0.110 3.890 11 H 0.046 0.954 12 N -0.679 5.679 13 C 0.088 3.912 14 H 0.096 0.904 15 C -0.152 4.152 16 C -0.562 4.562 17 S 2.400 3.600 18 O -0.976 6.976 19 O -0.983 6.983 20 C -0.570 4.570 21 C -0.085 4.085 22 C 0.004 3.996 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.352 0.648 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.042 0.958 36 H 0.033 0.967 37 H -0.001 1.001 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -12.463 1.865 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.514 4.514 8 C -0.061 4.061 9 C -0.143 4.143 10 C 0.001 3.999 11 H 0.064 0.936 12 N -0.310 5.310 13 C -0.024 4.024 14 H 0.114 0.886 15 C -0.193 4.193 16 C -0.695 4.695 17 S 2.588 3.412 18 O -0.973 6.973 19 O -0.980 6.980 20 C -0.701 4.701 21 C -0.124 4.124 22 C -0.034 4.034 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.018 0.982 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.862 -13.263 2.740 18.003 hybrid contribution 0.118 1.791 -1.003 2.056 sum 11.980 -11.472 1.737 16.678 Atomic orbital electron populations 1.69996 1.07851 1.27270 1.52639 1.25674 0.95332 1.02005 0.95194 0.85813 0.79438 0.79522 0.78526 1.20149 1.22422 1.16944 1.20721 0.91581 0.91676 1.47410 1.19836 0.94319 0.96642 0.95330 1.21655 0.98222 0.95099 0.99299 1.21226 0.94505 0.91917 0.92271 0.93582 1.60546 1.28972 1.00579 1.40936 1.22059 0.98958 0.89069 0.92350 0.88599 1.23051 0.99208 0.92690 1.04302 1.30404 1.14138 1.04813 1.20127 1.08533 0.75317 0.77513 0.79856 1.93562 1.49449 1.86506 1.67829 1.93555 1.64086 1.53451 1.86948 1.30489 1.15109 1.16655 1.07851 1.21450 0.95216 0.97263 0.98448 1.19379 0.96718 0.93939 0.93392 0.93066 0.95754 0.94711 0.93559 0.91400 0.82772 0.87768 0.87804 0.82460 0.82885 0.83238 0.83862 0.93928 0.94830 0.98226 0.96356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.16 12.73 21.45 0.27 -54.88 16 2 C 0.02 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.94 42.22 27.53 68.60 1.89 44.11 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.25 -10.11 6.10 99.48 0.61 -9.51 16 7 C -0.49 -25.11 5.51 -16.17 -0.09 -25.20 16 8 C -0.02 -0.97 5.59 30.11 0.17 -0.80 16 9 C -0.10 -3.55 5.22 30.66 0.16 -3.39 16 10 C 0.11 3.44 2.20 44.89 0.10 3.54 16 11 H 0.05 1.39 7.44 -2.38 -0.02 1.37 16 12 N -0.68 -16.07 6.05 -466.06 -2.82 -18.89 16 13 C 0.09 1.59 2.68 45.60 0.12 1.72 16 14 H 0.10 1.87 7.23 -2.39 -0.02 1.85 16 15 C -0.15 -1.94 5.76 31.57 0.18 -1.76 16 16 C -0.56 -5.87 7.31 72.66 0.53 -5.34 16 17 S 2.40 40.12 6.10 -56.49 -0.34 39.78 16 18 O -0.98 -23.01 18.14 -127.49 -2.31 -25.32 16 19 O -0.98 -24.33 18.15 -127.49 -2.31 -26.64 16 20 C -0.57 -9.12 6.93 72.38 0.50 -8.62 16 21 C -0.09 -3.38 5.45 30.67 0.17 -3.21 16 22 C 0.00 0.18 5.96 30.11 0.18 0.36 16 23 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.03 1.44 4.59 -2.39 -0.01 1.43 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 28 H 0.35 6.84 7.85 -89.69 -0.70 6.13 16 29 H 0.10 1.33 7.85 -2.39 -0.02 1.31 16 30 H 0.10 1.04 7.92 -2.39 -0.02 1.02 16 31 H 0.16 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.15 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.15 2.22 8.07 -2.39 -0.02 2.20 16 34 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.02 1.00 7.08 -2.39 -0.02 0.99 16 Total: -1.00 -72.15 306.03 -2.89 -75.04 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.25 Total: 8.22 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 2.48 Total: -41.41 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -2.54 Total: -73.77 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -4.63 Total: -51.96 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.89 Total: 44.11 kcal Atomic # 16 Polarization: 40.12 SS G_CDS: -0.34 Total: 39.78 kcal Total: -72.15 -2.89 -75.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254318255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.774 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds