Wall clock time and date at job start Mon Mar 30 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47214 * 239.99548 * 3 2 1 5 5 H 1.48504 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46938 * 119.99662 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84739 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53325 * 128.63145 * 8 7 2 10 10 C 1.52957 * 109.40295 * 54.62432 * 9 8 7 11 11 H 1.09004 * 109.41420 * 56.51208 * 10 9 8 12 12 N 1.46904 * 109.40989 * 176.36395 * 10 9 8 13 13 C 1.46901 * 111.00053 * 204.99815 * 12 10 9 14 14 H 1.09001 * 109.64311 * 325.43521 * 13 12 10 15 15 C 1.53875 * 109.64898 * 205.00255 * 13 12 10 16 16 C 1.55044 * 106.62340 * 192.97096 * 15 13 12 17 17 S 1.83288 * 102.57112 * 42.43282 * 16 15 13 18 18 O 1.42100 * 109.35398 * 90.18402 * 17 16 15 19 19 O 1.42099 * 109.35384 * 223.39039 * 17 16 15 20 20 C 1.54166 * 109.64354 * 85.72983 * 13 12 10 21 21 C 1.52949 * 109.81964 * 296.39982 * 10 9 8 22 22 C 1.51265 * 120.84918 * 179.97438 * 7 2 1 23 23 H 0.97011 * 119.99584 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.63053 * 8.91501 * 8 7 2 25 25 H 1.09003 * 109.62740 * 248.33979 * 8 7 2 26 26 H 1.09004 * 109.47882 * 174.60378 * 9 8 7 27 27 H 1.09002 * 109.47873 * 294.63223 * 9 8 7 28 28 H 1.00898 * 111.00142 * 328.95497 * 12 10 9 29 29 H 1.09001 * 110.02606 * 312.26088 * 15 13 12 30 30 H 1.08994 * 110.02719 * 73.62517 * 15 13 12 31 31 H 1.09006 * 110.79231 * 160.70328 * 16 15 13 32 32 H 1.09002 * 110.78983 * 283.96878 * 16 15 13 33 33 H 1.09010 * 110.31812 * 266.66259 * 20 13 12 34 34 H 1.09000 * 110.32404 * 28.85721 * 20 13 12 35 35 H 1.09000 * 109.48573 * 183.57726 * 21 10 9 36 36 H 1.08994 * 109.48547 * 303.60843 * 21 10 9 37 37 H 1.09010 * 109.62574 * 111.65483 * 22 7 2 38 38 H 1.09000 * 109.78466 * 351.18482 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 6 1.2675 -2.5151 0.0005 9 6 1.8228 -3.3826 -1.1340 10 6 3.3398 -3.5071 -0.9828 11 1 3.5737 -3.9124 0.0017 12 7 3.8613 -4.4089 -2.0185 13 6 5.1272 -5.0216 -1.5942 14 1 5.6952 -4.3110 -0.9938 15 6 5.9474 -5.4249 -2.8322 16 6 7.0874 -6.3469 -2.3279 17 16 6.2260 -7.4209 -1.1180 18 8 5.7310 -8.5756 -1.7820 19 8 7.0314 -7.5609 0.0444 20 6 4.8374 -6.2854 -0.7602 21 6 3.9906 -2.1312 -1.1339 22 6 3.5169 -1.2166 0.0000 23 1 -0.4850 0.8402 -0.0004 24 1 0.2035 -2.3408 -0.1590 25 1 1.4197 -3.0193 0.9549 26 1 1.3704 -4.3734 -1.0888 27 1 1.5896 -2.9198 -2.0930 28 1 3.1813 -5.1140 -2.2599 29 1 5.3162 -5.9639 -3.5387 30 1 6.3662 -4.5380 -3.3076 31 1 7.4977 -6.9381 -3.1467 32 1 7.8707 -5.7640 -1.8434 33 1 4.8126 -6.0406 0.3018 34 1 3.8928 -6.7338 -1.0681 35 1 5.0747 -2.2349 -1.0887 36 1 3.7065 -1.6980 -2.0929 37 1 3.8778 -1.6003 0.9544 38 1 3.9009 -0.2088 -0.1580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254318268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:50 Heat of formation + Delta-G solvation = -86.040090 kcal Electronic energy + Delta-G solvation = -19713.557000 eV Core-core repulsion = 16682.274588 eV Total energy + Delta-G solvation = -3031.282412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.52710 -37.20573 -36.29879 -36.05117 -33.14528 -31.31538 -29.78878 -29.14269 -26.67140 -24.68742 -22.00363 -21.54022 -20.72378 -19.28949 -18.96781 -17.07299 -16.77483 -16.11172 -15.86662 -15.18827 -14.88383 -14.49125 -14.32374 -13.70772 -13.43328 -12.89301 -12.69651 -12.68076 -12.42406 -12.33286 -12.22152 -12.18302 -11.96902 -11.38526 -11.37548 -11.01709 -10.82283 -10.81039 -10.61308 -10.38877 -10.18103 -10.04485 -9.68770 -8.97640 -8.72523 -8.50357 -8.19957 -6.13459 -4.04337 -0.14324 2.34378 3.26456 3.33480 3.34398 3.39201 3.75738 4.06264 4.29034 4.35785 4.45939 4.58621 4.80904 4.83577 5.15191 5.21775 5.33901 5.46069 5.64724 5.74012 5.78810 5.85526 6.13488 6.45284 6.57523 6.68621 6.69666 6.86399 6.98374 7.00965 7.35248 7.40929 7.59293 7.62829 7.69577 7.80442 8.34796 8.92973 9.51343 10.96373 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038956 B = 0.004203 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.579796 B = 6659.996017 C = 6882.515668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.489 4.489 8 C 0.012 3.988 9 C -0.109 4.109 10 C 0.098 3.902 11 H 0.037 0.963 12 N -0.674 5.674 13 C 0.096 3.904 14 H 0.100 0.900 15 C -0.109 4.109 16 C -0.587 4.587 17 S 2.389 3.611 18 O -0.941 6.941 19 O -0.944 6.944 20 C -0.626 4.626 21 C -0.093 4.093 22 C -0.013 4.013 23 H 0.265 0.735 24 H 0.058 0.942 25 H 0.001 0.999 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.340 0.660 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.361 -10.617 -4.987 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.508 4.508 8 C -0.026 4.026 9 C -0.148 4.148 10 C -0.010 4.010 11 H 0.055 0.945 12 N -0.305 5.305 13 C -0.017 4.017 14 H 0.118 0.882 15 C -0.148 4.148 16 C -0.717 4.717 17 S 2.573 3.427 18 O -0.938 6.938 19 O -0.941 6.941 20 C -0.757 4.757 21 C -0.132 4.132 22 C -0.051 4.051 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.020 0.980 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.690 -10.902 -4.988 16.745 hybrid contribution -0.089 1.053 0.375 1.121 sum 11.600 -9.850 -4.614 15.902 Atomic orbital electron populations 1.69824 1.06173 1.27080 1.49723 1.24843 0.94728 0.98583 0.94508 0.86649 0.79400 0.83013 0.78950 1.19949 1.21859 1.20091 1.19996 0.89268 0.91461 1.50043 1.19350 0.98737 0.92932 0.91599 1.21824 0.92473 0.98061 1.02402 1.21530 0.95967 0.92651 0.90888 0.94479 1.60642 1.04621 1.22160 1.43041 1.22081 0.94348 0.92103 0.93177 0.88226 1.22203 0.93601 1.00672 0.98296 1.30609 1.09740 1.14446 1.16938 1.09014 0.78834 0.77713 0.77171 1.93611 1.79891 1.44797 1.75539 1.93605 1.67092 1.86301 1.47082 1.31311 1.18915 1.14330 1.11169 1.21567 0.96114 0.94594 1.00913 1.19638 0.96789 0.94774 0.93857 0.92513 0.92314 0.98029 0.95405 0.92253 0.84050 0.89334 0.87928 0.84561 0.84472 0.84246 0.84444 0.95217 0.92303 0.96700 0.95668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 12.73 55.43 0.71 -24.54 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.96 26.80 -169.99 -4.56 16.40 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.49 -12.51 5.51 -98.92 -0.55 -13.05 16 8 C 0.01 0.28 5.97 -27.48 -0.16 0.12 16 9 C -0.11 -2.15 5.24 -26.63 -0.14 -2.29 16 10 C 0.10 1.69 2.22 -67.76 -0.15 1.54 16 11 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 12 N -0.67 -9.03 6.07 -98.67 -0.60 -9.63 16 13 C 0.10 1.00 2.67 -66.65 -0.18 0.82 16 14 H 0.10 1.07 7.09 -51.93 -0.37 0.70 16 15 C -0.11 -0.89 6.10 -25.20 -0.15 -1.04 16 16 C -0.59 -3.97 7.31 38.24 0.28 -3.69 16 17 S 2.39 22.54 6.11 -107.50 -0.66 21.88 16 18 O -0.94 -11.98 18.15 -57.71 -1.05 -13.03 16 19 O -0.94 -12.33 18.15 -57.71 -1.05 -13.38 16 20 C -0.63 -5.84 6.64 37.77 0.25 -5.59 16 21 C -0.09 -1.78 5.43 -26.66 -0.14 -1.93 16 22 C -0.01 -0.28 5.58 -27.51 -0.15 -0.43 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 25 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.34 4.14 7.71 -39.29 -0.30 3.84 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.14 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.14 1.18 7.60 -51.93 -0.39 0.79 16 35 H 0.03 0.50 7.37 -51.93 -0.38 0.11 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.02 0.56 5.18 -51.93 -0.27 0.29 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -32.72 306.79 -9.62 -42.33 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.84 Total: -1.06 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.20 Total: -23.60 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.11 Total: -34.17 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -2.09 Total: -26.40 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.56 Total: 16.40 kcal Atomic # 16 Polarization: 22.54 SS G_CDS: -0.66 Total: 21.88 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.72 -9.62 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254318268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.710 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds