Wall clock time and date at job start Mon Mar 30 2020 00:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48495 * 109.47220 * 270.00188 * 3 2 1 5 5 H 1.48493 * 109.46947 * 30.00498 * 3 2 1 6 6 H 1.48502 * 109.46963 * 150.00552 * 3 2 1 7 7 C 1.37881 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00170 * 175.87985 * 7 2 1 9 9 C 1.50698 * 119.99796 * 355.87358 * 7 2 1 10 10 N 1.46903 * 110.01490 * 55.04291 * 9 7 2 11 11 C 1.46906 * 110.99859 * 62.53218 * 10 9 7 12 12 H 1.08990 * 109.53620 * 336.47136 * 11 10 9 13 13 C 1.53877 * 109.64169 * 216.10755 * 11 10 9 14 14 C 1.55054 * 106.66093 * 192.98800 * 13 11 10 15 15 S 1.83289 * 102.56548 * 42.41336 * 14 13 11 16 16 O 1.42098 * 109.35315 * 90.18274 * 15 14 13 17 17 O 1.42099 * 109.35111 * 223.38493 * 15 14 13 18 18 C 1.54194 * 109.69123 * 96.82701 * 11 10 9 19 19 C 1.54271 * 110.07524 * 176.45701 * 9 7 2 20 20 C 1.54889 * 104.19194 * 95.69744 * 19 9 7 21 21 C 1.54894 * 102.75042 * 37.94895 * 20 19 9 22 22 C 1.53877 * 110.03802 * 293.65185 * 9 7 2 23 23 H 0.96998 * 119.99999 * 5.02870 * 1 2 3 24 24 H 1.00899 * 110.99888 * 186.48357 * 10 9 7 25 25 H 1.09004 * 110.02652 * 73.67660 * 13 11 10 26 26 H 1.08999 * 110.03297 * 312.30856 * 13 11 10 27 27 H 1.09000 * 110.78469 * 160.68141 * 14 13 11 28 28 H 1.08997 * 110.79173 * 283.95408 * 14 13 11 29 29 H 1.09001 * 110.27180 * 28.80837 * 18 11 10 30 30 H 1.09002 * 110.41871 * 266.67552 * 18 11 10 31 31 H 1.08994 * 110.49010 * 214.37950 * 19 9 7 32 32 H 1.09001 * 110.48093 * 337.02699 * 19 9 7 33 33 H 1.08998 * 110.76119 * 279.63282 * 20 19 9 34 34 H 1.09000 * 110.75455 * 156.25745 * 20 19 9 35 35 H 1.08992 * 110.48331 * 203.37850 * 21 20 19 36 36 H 1.08998 * 110.59881 * 80.78564 * 21 20 19 37 37 H 1.08998 * 110.02882 * 359.95071 * 22 9 7 38 38 H 1.09003 * 110.03016 * 121.33182 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0824 -1.1953 -0.0677 9 6 1.2539 -2.4975 0.0928 10 7 0.2490 -2.5766 -0.9758 11 6 0.8857 -2.5592 -2.2996 12 1 1.8653 -2.0870 -2.2267 13 6 0.0049 -1.7736 -3.2869 14 6 0.5519 -2.0735 -4.7064 15 16 0.8762 -3.8761 -4.6361 16 8 -0.2860 -4.5803 -5.0516 17 8 2.1298 -4.1531 -5.2453 18 6 1.0441 -4.0023 -2.8190 19 6 2.2354 -3.6827 -0.0161 20 6 2.5361 -4.0631 1.4550 21 6 1.1633 -3.8692 2.1457 22 6 0.5723 -2.6161 1.4672 23 1 -0.4850 0.8368 -0.0736 24 1 -0.3328 -3.3935 -0.8652 25 1 0.0720 -0.7057 -3.0789 26 1 -1.0307 -2.1045 -3.2082 27 1 -0.1960 -1.8443 -5.4655 28 1 1.4717 -1.5189 -4.8918 29 1 0.2599 -4.6392 -2.4097 30 1 2.0260 -4.3956 -2.5560 31 1 1.7687 -4.5178 -0.5384 32 1 3.1491 -3.3758 -0.5251 33 1 3.2818 -3.3930 1.8826 34 1 2.8614 -5.1010 1.5268 35 1 1.2947 -3.6984 3.2141 36 1 0.5223 -4.7339 1.9744 37 1 0.7851 -1.7313 2.0671 38 1 -0.5043 -2.7315 1.3413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254328975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:50 Heat of formation + Delta-G solvation = -70.917498 kcal Electronic energy + Delta-G solvation = -20644.819553 eV Core-core repulsion = 17614.192906 eV Total energy + Delta-G solvation = -3030.626647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.41003 -36.77860 -35.90269 -35.59123 -32.54082 -31.37286 -28.84501 -27.67702 -26.45825 -24.55293 -23.29040 -20.46090 -19.60080 -18.94048 -18.52879 -16.56583 -16.42922 -15.85900 -15.39128 -14.98319 -14.51298 -14.41047 -13.83841 -13.70236 -13.33759 -12.51956 -12.47802 -12.15347 -11.91221 -11.84769 -11.77078 -11.71285 -11.41326 -11.11698 -10.97263 -10.69903 -10.57020 -10.42827 -10.24718 -10.11932 -10.05489 -9.74360 -9.60701 -9.44667 -8.90628 -8.42961 -7.01259 -5.90249 -4.05984 0.35103 2.81316 3.25331 3.34626 3.38159 3.86420 4.25684 4.40326 4.79119 5.00102 5.09562 5.14669 5.31350 5.51891 5.57152 5.65065 5.67221 5.74474 5.93562 6.09918 6.19589 6.27318 6.37362 6.55031 6.64447 6.65659 6.73950 6.76782 6.81805 6.92107 7.16876 7.23142 7.62575 7.82245 8.14983 8.50059 8.72890 9.07769 9.60366 11.08953 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.007856 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.148581 B = 3563.388789 C = 4490.449333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.087 3.913 3 Si 0.869 3.131 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.245 3.755 10 N -0.623 5.623 11 C 0.113 3.887 12 H 0.106 0.894 13 C -0.099 4.099 14 C -0.584 4.584 15 S 2.376 3.624 16 O -0.952 6.952 17 O -0.955 6.955 18 C -0.616 4.616 19 C -0.154 4.154 20 C -0.115 4.115 21 C -0.130 4.130 22 C -0.089 4.089 23 H 0.254 0.746 24 H 0.306 0.694 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -4.921 -3.383 5.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.120 4.120 3 Si 0.697 3.303 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.157 3.843 10 N -0.251 5.251 11 C 0.000 4.000 12 H 0.124 0.876 13 C -0.138 4.138 14 C -0.715 4.715 15 S 2.561 3.439 16 O -0.949 6.949 17 O -0.952 6.952 18 C -0.749 4.749 19 C -0.193 4.193 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.128 4.128 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.008 -4.809 -4.024 6.271 hybrid contribution 0.836 0.643 0.519 1.175 sum 0.828 -4.166 -3.506 5.507 Atomic orbital electron populations 1.70118 1.05228 1.25472 1.45938 1.24894 0.94585 0.97986 0.94546 0.86983 0.80318 0.84918 0.78050 1.20880 1.21409 1.20099 1.20866 0.92136 0.89557 1.53949 0.92893 1.19213 0.86224 0.91635 0.87267 1.60736 1.22506 1.42701 0.99120 1.21811 1.00241 0.86348 0.91594 0.87614 1.22185 0.99816 1.04932 0.86908 1.30571 1.10938 1.23509 1.06496 1.09286 0.75037 0.79769 0.79790 1.93570 1.49705 1.70684 1.80961 1.93563 1.42870 1.83977 1.74789 1.31412 1.11154 1.09041 1.23330 1.23363 1.01196 0.99335 0.95437 1.22326 0.97371 0.98688 0.96961 1.22447 0.96550 0.99061 0.98679 1.22081 0.98366 0.95176 0.97178 0.93622 0.87568 0.87946 0.90290 0.85337 0.84906 0.85139 0.84861 0.93731 0.92677 0.91875 0.93927 0.93362 0.93493 0.91651 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.92 12.02 55.43 0.67 -20.26 16 2 C 0.09 2.13 5.09 -17.82 -0.09 2.04 16 3 Si 0.87 19.51 29.54 -169.99 -5.02 14.48 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -12.51 6.38 -34.44 -0.22 -12.73 16 8 H 0.05 1.30 7.56 -52.49 -0.40 0.90 16 9 C 0.25 5.09 0.40 -131.63 -0.05 5.03 16 10 N -0.62 -12.09 4.78 -91.95 -0.44 -12.53 16 11 C 0.11 1.92 2.30 -66.63 -0.15 1.77 16 12 H 0.11 1.99 6.55 -51.93 -0.34 1.65 16 13 C -0.10 -1.54 6.10 -25.19 -0.15 -1.69 16 14 C -0.58 -7.38 7.31 38.24 0.28 -7.10 16 15 S 2.38 33.32 6.11 -107.50 -0.66 32.66 16 16 O -0.95 -16.00 18.14 -57.71 -1.05 -17.04 16 17 O -0.96 -16.23 18.15 -57.71 -1.05 -17.28 16 18 C -0.62 -8.61 5.37 37.78 0.20 -8.41 16 19 C -0.15 -2.81 4.55 -25.07 -0.11 -2.92 16 20 C -0.12 -1.98 6.91 -24.74 -0.17 -2.15 16 21 C -0.13 -2.25 6.83 -25.07 -0.17 -2.42 16 22 C -0.09 -1.85 5.58 -25.61 -0.14 -1.99 16 23 H 0.25 6.28 8.32 -40.82 -0.34 5.94 16 24 H 0.31 5.50 7.82 -39.29 -0.31 5.19 16 25 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.13 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.13 1.66 7.48 -51.93 -0.39 1.28 16 30 H 0.13 1.78 7.11 -51.93 -0.37 1.41 16 31 H 0.04 0.74 6.17 -51.93 -0.32 0.42 16 32 H 0.05 1.03 7.67 -51.93 -0.40 0.64 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.52 7.49 -51.93 -0.39 1.14 16 38 H 0.05 1.04 7.85 -51.93 -0.41 0.63 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -29.37 306.02 -9.55 -38.92 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.83 Total: 7.02 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -0.79 Total: -30.58 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.23 Total: -32.79 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -2.09 Total: -34.33 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 33.32 SS G_CDS: -0.66 Total: 32.66 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.37 -9.55 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254328975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.993 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds