Wall clock time and date at job start Mon Mar 30 2020 01:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47278 * 263.56612 * 3 2 1 5 5 H 1.48496 * 109.47026 * 23.56922 * 3 2 1 6 6 H 1.48506 * 109.47117 * 143.56995 * 3 2 1 7 7 C 1.37876 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99553 * 352.37717 * 7 2 1 9 9 C 1.50700 * 120.00646 * 172.37850 * 7 2 1 10 10 H 1.09004 * 109.46792 * 354.39490 * 9 7 2 11 11 C 1.50702 * 109.46945 * 234.39668 * 9 7 2 12 12 O 1.21278 * 120.00199 * 261.77072 * 11 9 7 13 13 N 1.34778 * 119.99985 * 81.77239 * 11 9 7 14 14 C 1.46500 * 120.00182 * 179.97438 * 13 11 9 15 15 C 1.53838 * 113.65921 * 254.00195 * 14 13 11 16 16 C 1.51775 * 86.68900 * 220.76329 * 15 14 13 17 17 O 1.20759 * 135.74671 * 205.15953 * 16 15 14 18 18 C 1.51581 * 88.46743 * 25.07808 * 16 15 14 19 19 C 1.50695 * 109.47280 * 114.39804 * 9 7 2 20 20 C 1.38238 * 120.00073 * 52.63122 * 19 9 7 21 21 C 1.38230 * 120.00048 * 179.80723 * 20 19 9 22 22 C 1.38239 * 120.00023 * 0.40644 * 21 20 19 23 23 C 1.38238 * 119.99981 * 359.84901 * 22 21 20 24 24 C 1.38233 * 120.00143 * 232.91198 * 19 9 7 25 25 H 0.96999 * 119.99755 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99900 * 0.27669 * 13 11 9 27 27 H 1.08995 * 112.88063 * 25.33671 * 14 13 11 28 28 H 1.09006 * 113.66856 * 335.19486 * 15 14 13 29 29 H 1.08992 * 113.66859 * 106.26101 * 15 14 13 30 30 H 1.08995 * 113.66582 * 220.46048 * 18 16 15 31 31 H 1.08999 * 113.66780 * 89.38950 * 18 16 15 32 32 H 1.08001 * 119.99829 * 0.02562 * 20 19 9 33 33 H 1.07996 * 120.00379 * 180.23127 * 21 20 19 34 34 H 1.08006 * 120.00439 * 179.83012 * 22 21 20 35 35 H 1.08002 * 120.00117 * 179.97438 * 23 22 21 36 36 H 1.08004 * 119.99856 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6325 1.9681 -1.3912 5 1 1.3852 2.6880 0.5598 6 1 3.4722 1.4833 0.8315 7 6 2.0046 -1.1940 -0.0005 8 1 1.4717 -2.1252 0.1231 9 6 3.5016 -1.1997 -0.1736 10 1 3.8471 -0.1871 -0.3822 11 6 3.8710 -2.1031 -1.3219 12 8 4.2378 -3.2388 -1.1063 13 7 3.7939 -1.6489 -2.5885 14 6 4.1536 -2.5269 -3.7047 15 6 5.5069 -2.1823 -4.3499 16 6 4.8392 -2.4526 -5.6858 17 8 5.2090 -2.7875 -6.7856 18 6 3.5077 -2.1223 -5.0411 19 6 4.1515 -1.7020 1.0898 20 6 3.7529 -2.9055 1.6408 21 6 4.3518 -3.3682 2.7975 22 6 5.3435 -2.6232 3.4080 23 6 5.7383 -1.4171 2.8600 24 6 5.1421 -0.9564 1.7011 25 1 -0.4850 0.8401 0.0004 26 1 3.5044 -0.7392 -2.7607 27 1 4.0393 -3.5842 -3.4661 28 1 5.8053 -1.1429 -4.2123 29 1 6.3006 -2.8882 -4.1055 30 1 2.6961 -2.7802 -5.3517 31 1 3.2442 -1.0662 -5.0978 32 1 2.9761 -3.4860 1.1655 33 1 4.0431 -4.3102 3.2260 34 1 5.8095 -2.9833 4.3134 35 1 6.5128 -0.8349 3.3372 36 1 5.4506 -0.0141 1.2729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298360161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:26 Heat of formation + Delta-G solvation = -26.268643 kcal Electronic energy + Delta-G solvation = -20470.182331 eV Core-core repulsion = 17306.047853 eV Total energy + Delta-G solvation = -3164.134478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25339 -39.15949 -37.95132 -36.33545 -33.68917 -32.32884 -31.56021 -30.17123 -27.87002 -26.22156 -24.17516 -22.81499 -21.88471 -20.89588 -19.71587 -18.94032 -17.21021 -16.61156 -16.42997 -15.99139 -15.72910 -15.32078 -14.71947 -14.46871 -14.16073 -13.77176 -13.47838 -13.04967 -12.97930 -12.72148 -12.68346 -12.51315 -12.09441 -11.88158 -11.54664 -11.29067 -11.19742 -11.11750 -10.53546 -10.20924 -10.08223 -9.60093 -9.53307 -9.14077 -8.76536 -8.60858 -8.17588 -7.87080 -6.38172 -4.40643 1.73990 2.09908 2.17151 3.02184 3.17382 3.18506 3.43900 3.62148 3.96112 4.12715 4.42216 4.58621 4.73859 4.97132 5.00789 5.19016 5.38159 5.50188 5.54621 5.58788 5.65830 5.75341 5.83330 5.94206 6.10286 6.16238 6.30867 6.36405 6.68912 6.81408 6.92732 7.12737 7.20343 7.22969 7.34693 7.54331 7.74947 8.03947 8.21993 8.66036 8.99257 9.19058 10.73114 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.006556 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.939966 B = 4269.556685 C = 5456.842254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.866 3.134 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.084 0.916 9 C 0.034 3.966 10 H 0.060 0.940 11 C 0.535 3.465 12 O -0.555 6.555 13 N -0.721 5.721 14 C 0.140 3.860 15 C -0.209 4.209 16 C 0.364 3.636 17 O -0.431 6.431 18 C -0.201 4.201 19 C -0.033 4.033 20 C -0.069 4.069 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.133 4.133 25 H 0.270 0.730 26 H 0.402 0.598 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 0.085 -3.057 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.544 4.544 8 H 0.102 0.898 9 C 0.012 3.988 10 H 0.078 0.922 11 C 0.324 3.676 12 O -0.432 6.432 13 N -0.372 5.372 14 C 0.033 3.967 15 C -0.248 4.248 16 C 0.238 3.762 17 O -0.302 6.302 18 C -0.240 4.240 19 C -0.034 4.034 20 C -0.087 4.087 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.151 4.151 25 H 0.080 0.920 26 H 0.237 0.763 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.774 -0.801 -3.470 9.470 hybrid contribution 0.038 1.487 0.093 1.490 sum 8.812 0.685 -3.377 9.462 Atomic orbital electron populations 1.69864 1.06268 1.27632 1.47609 1.25056 0.94775 0.98772 0.93664 0.87006 0.80833 0.83755 0.79158 1.19692 1.20895 1.18405 1.20532 0.86532 0.95672 1.51697 0.89787 1.18332 0.98386 0.94523 0.87547 0.92208 1.21577 0.73388 0.88764 0.83850 1.90580 1.47429 1.20324 1.84908 1.45824 1.69992 1.16132 1.05268 1.21800 0.92650 0.97331 0.84884 1.24627 1.00700 1.04795 0.94715 1.25485 0.93617 0.70155 0.86961 1.90410 1.80019 1.36354 1.23420 1.24415 0.98995 1.04910 0.95670 1.19978 0.92745 0.93797 0.96902 1.20924 0.98205 0.95459 0.94122 1.21061 0.97593 0.99652 0.96635 1.20892 0.99089 0.95852 1.00122 1.20887 1.00541 0.96716 0.96776 1.21000 0.97422 0.99831 0.96877 0.91989 0.76327 0.86173 0.86237 0.88570 0.88145 0.85916 0.86123 0.87077 0.87322 0.87251 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 13.96 55.43 0.77 -23.35 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 18.57 26.84 -169.99 -4.56 14.00 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.26 -5.40 6.97 56.52 0.39 -5.01 16 7 C -0.51 -12.69 8.24 -34.44 -0.28 -12.98 16 8 H 0.08 2.37 7.72 -52.48 -0.41 1.96 16 9 C 0.03 0.73 2.20 -94.08 -0.21 0.52 16 10 H 0.06 1.21 4.73 -51.93 -0.25 0.97 16 11 C 0.53 10.80 6.94 -10.98 -0.08 10.72 16 12 O -0.56 -12.41 14.82 5.56 0.08 -12.33 16 13 N -0.72 -11.56 5.36 -53.04 -0.28 -11.84 16 14 C 0.14 1.86 4.23 -67.14 -0.28 1.57 16 15 C -0.21 -2.34 7.86 -26.92 -0.21 -2.55 16 16 C 0.36 4.35 9.14 -28.16 -0.26 4.09 16 17 O -0.43 -6.45 17.99 6.00 0.11 -6.34 16 18 C -0.20 -2.17 7.80 -27.01 -0.21 -2.38 16 19 C -0.03 -0.71 4.52 -104.63 -0.47 -1.18 16 20 C -0.07 -1.45 8.04 -39.58 -0.32 -1.77 16 21 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.14 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.13 -2.54 9.67 -39.58 -0.38 -2.92 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.40 5.83 8.72 -40.82 -0.36 5.48 16 27 H 0.12 1.76 7.50 -51.93 -0.39 1.37 16 28 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.12 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.12 2.67 7.47 -52.49 -0.39 2.28 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.11 1.91 7.96 -52.48 -0.42 1.50 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -30.17 313.52 -7.46 -37.63 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.31 Total: 10.52 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -4.00 Total: -13.01 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.49 Total: -35.20 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.19 Total: -18.67 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.56 Total: 14.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.17 -7.46 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298360161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.362 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds