Wall clock time and date at job start Mon Mar 30 2020 01:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99843 * 2 1 4 4 H 1.48499 * 109.47278 * 263.56612 * 3 2 1 5 5 H 1.48496 * 109.47026 * 23.56922 * 3 2 1 6 6 H 1.48506 * 109.47117 * 143.56995 * 3 2 1 7 7 C 1.37876 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99553 * 352.37717 * 7 2 1 9 9 C 1.50700 * 120.00646 * 172.37850 * 7 2 1 10 10 H 1.09004 * 109.46792 * 354.39490 * 9 7 2 11 11 C 1.50702 * 109.46945 * 234.39668 * 9 7 2 12 12 O 1.21278 * 120.00199 * 261.77072 * 11 9 7 13 13 N 1.34778 * 119.99985 * 81.77239 * 11 9 7 14 14 C 1.46500 * 120.00182 * 179.97438 * 13 11 9 15 15 C 1.53838 * 113.65921 * 254.00195 * 14 13 11 16 16 C 1.51775 * 86.68900 * 220.76329 * 15 14 13 17 17 O 1.20759 * 135.74671 * 205.15953 * 16 15 14 18 18 C 1.51581 * 88.46743 * 25.07808 * 16 15 14 19 19 C 1.50695 * 109.47280 * 114.39804 * 9 7 2 20 20 C 1.38238 * 120.00073 * 52.63122 * 19 9 7 21 21 C 1.38230 * 120.00048 * 179.80723 * 20 19 9 22 22 C 1.38239 * 120.00023 * 0.40644 * 21 20 19 23 23 C 1.38238 * 119.99981 * 359.84901 * 22 21 20 24 24 C 1.38233 * 120.00143 * 232.91198 * 19 9 7 25 25 H 0.96999 * 119.99755 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99900 * 0.27669 * 13 11 9 27 27 H 1.08995 * 112.88063 * 25.33671 * 14 13 11 28 28 H 1.09006 * 113.66856 * 335.19486 * 15 14 13 29 29 H 1.08992 * 113.66859 * 106.26101 * 15 14 13 30 30 H 1.08995 * 113.66582 * 220.46048 * 18 16 15 31 31 H 1.08999 * 113.66780 * 89.38950 * 18 16 15 32 32 H 1.08001 * 119.99829 * 0.02562 * 20 19 9 33 33 H 1.07996 * 120.00379 * 180.23127 * 21 20 19 34 34 H 1.08006 * 120.00439 * 179.83012 * 22 21 20 35 35 H 1.08002 * 120.00117 * 179.97438 * 23 22 21 36 36 H 1.08004 * 119.99856 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6325 1.9681 -1.3912 5 1 1.3852 2.6880 0.5598 6 1 3.4722 1.4833 0.8315 7 6 2.0046 -1.1940 -0.0005 8 1 1.4717 -2.1252 0.1231 9 6 3.5016 -1.1997 -0.1736 10 1 3.8471 -0.1871 -0.3822 11 6 3.8710 -2.1031 -1.3219 12 8 4.2378 -3.2388 -1.1063 13 7 3.7939 -1.6489 -2.5885 14 6 4.1536 -2.5269 -3.7047 15 6 5.5069 -2.1823 -4.3499 16 6 4.8392 -2.4526 -5.6858 17 8 5.2090 -2.7875 -6.7856 18 6 3.5077 -2.1223 -5.0411 19 6 4.1515 -1.7020 1.0898 20 6 3.7529 -2.9055 1.6408 21 6 4.3518 -3.3682 2.7975 22 6 5.3435 -2.6232 3.4080 23 6 5.7383 -1.4171 2.8600 24 6 5.1421 -0.9564 1.7011 25 1 -0.4850 0.8401 0.0004 26 1 3.5044 -0.7392 -2.7607 27 1 4.0393 -3.5842 -3.4661 28 1 5.8053 -1.1429 -4.2123 29 1 6.3006 -2.8882 -4.1055 30 1 2.6961 -2.7802 -5.3517 31 1 3.2442 -1.0662 -5.0978 32 1 2.9761 -3.4860 1.1655 33 1 4.0431 -4.3102 3.2260 34 1 5.8095 -2.9833 4.3134 35 1 6.5128 -0.8349 3.3372 36 1 5.4506 -0.0141 1.2729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298360161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:26 Heat of formation + Delta-G solvation = -45.725303 kcal Electronic energy + Delta-G solvation = -20471.026035 eV Core-core repulsion = 17306.047853 eV Total energy + Delta-G solvation = -3164.978183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44270 -40.54956 -39.34549 -37.54187 -35.47757 -33.78313 -33.20952 -31.59550 -29.47168 -27.13736 -25.86494 -24.15879 -23.32765 -22.28580 -21.14159 -20.05726 -19.07623 -17.93191 -17.86891 -17.34357 -16.78588 -16.49832 -16.24046 -15.90824 -15.62018 -15.19773 -14.92632 -14.70642 -14.35681 -14.11449 -13.89113 -13.67997 -13.56462 -13.31030 -12.88018 -12.70802 -12.66953 -12.30376 -12.04266 -11.87845 -11.68001 -11.39518 -10.87571 -10.54789 -10.51865 -9.95124 -9.61122 -9.34961 -8.33194 -6.41758 0.66028 0.72646 0.78100 1.35448 1.44814 1.52710 1.86773 2.33011 2.38458 2.87271 3.03350 3.18793 3.42531 3.75479 3.98156 4.09687 4.16790 4.25423 4.31542 4.43902 4.44922 4.52079 4.54581 4.71041 4.85903 4.86769 4.91857 5.01609 5.23120 5.35789 5.41714 5.62269 5.72751 5.77746 5.97444 6.21975 6.33333 6.38089 6.61720 6.71383 7.22277 7.46804 8.82086 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.006556 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.939966 B = 4269.556685 C = 5456.842254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.030 3.970 3 Si 0.928 3.072 4 H -0.235 1.235 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.505 4.505 8 H 0.029 0.971 9 C 0.036 3.964 10 H 0.077 0.923 11 C 0.531 3.469 12 O -0.584 6.584 13 N -0.708 5.708 14 C 0.125 3.875 15 C -0.195 4.195 16 C 0.374 3.626 17 O -0.462 6.462 18 C -0.187 4.187 19 C -0.064 4.064 20 C -0.100 4.100 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.145 4.145 25 H 0.271 0.729 26 H 0.412 0.588 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.251 2.123 -2.741 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.170 4.170 3 Si 0.750 3.250 4 H -0.159 1.159 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.543 4.543 8 H 0.047 0.953 9 C 0.014 3.986 10 H 0.095 0.905 11 C 0.320 3.680 12 O -0.464 6.464 13 N -0.359 5.359 14 C 0.019 3.981 15 C -0.233 4.233 16 C 0.250 3.750 17 O -0.336 6.336 18 C -0.225 4.225 19 C -0.065 4.065 20 C -0.119 4.119 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.143 4.143 24 C -0.163 4.163 25 H 0.080 0.920 26 H 0.248 0.752 27 H 0.119 0.881 28 H 0.161 0.839 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.520 1.236 -3.190 12.017 hybrid contribution -0.824 0.715 0.065 1.093 sum 10.695 1.951 -3.125 11.312 Atomic orbital electron populations 1.70025 1.08424 1.28695 1.49830 1.25916 0.95406 1.02709 0.92974 0.86007 0.79581 0.78075 0.81339 1.15875 1.21800 1.16811 1.20463 0.88650 0.93688 1.51487 0.95290 1.18261 0.95801 0.95754 0.88760 0.90511 1.21333 0.73550 0.88106 0.84980 1.90559 1.49013 1.21302 1.85565 1.45670 1.68747 1.16848 1.04626 1.21915 0.95198 0.96039 0.84926 1.24578 0.99302 1.06215 0.93241 1.25522 0.94160 0.68842 0.86513 1.90412 1.80547 1.37918 1.24680 1.24395 0.98588 1.06486 0.93002 1.20067 0.94570 0.94627 0.97203 1.20852 0.98878 0.96153 0.95996 1.21345 0.97793 1.00731 0.95678 1.21357 0.97771 0.95319 1.00850 1.21370 1.00440 0.96820 0.95671 1.21282 0.96981 1.00300 0.97693 0.91964 0.75164 0.88125 0.83872 0.88432 0.87556 0.83453 0.89531 0.85158 0.83383 0.83286 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.19 13.96 21.45 0.30 -52.89 16 2 C 0.03 1.56 5.47 84.65 0.46 2.02 16 3 Si 0.93 37.12 26.84 68.60 1.84 38.96 16 4 H -0.24 -8.04 7.11 99.48 0.71 -7.33 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.24 -9.13 6.97 99.48 0.69 -8.44 16 7 C -0.51 -26.46 8.24 25.60 0.21 -26.25 16 8 H 0.03 1.78 7.72 -2.91 -0.02 1.76 16 9 C 0.04 1.55 2.20 -13.03 -0.03 1.52 16 10 H 0.08 2.97 4.73 -2.39 -0.01 2.96 16 11 C 0.53 21.77 6.94 87.66 0.61 22.37 16 12 O -0.58 -27.12 14.82 -3.02 -0.04 -27.17 16 13 N -0.71 -22.05 5.36 -440.12 -2.36 -24.41 16 14 C 0.13 3.20 4.23 45.50 0.19 3.39 16 15 C -0.19 -3.93 7.86 30.47 0.24 -3.69 16 16 C 0.37 8.27 9.14 29.67 0.27 8.54 16 17 O -0.46 -13.30 17.99 -1.45 -0.03 -13.32 16 18 C -0.19 -3.64 7.80 30.41 0.24 -3.40 16 19 C -0.06 -2.72 4.52 -19.87 -0.09 -2.81 16 20 C -0.10 -4.38 8.04 22.27 0.18 -4.20 16 21 C -0.14 -4.89 10.05 22.27 0.22 -4.66 16 22 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 23 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 24 C -0.14 -5.17 9.67 22.27 0.22 -4.95 16 25 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.41 11.08 8.72 -92.71 -0.81 10.27 16 27 H 0.10 3.01 7.50 -2.39 -0.02 2.99 16 28 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.15 2.22 8.11 -2.39 -0.02 2.20 16 32 H 0.09 4.23 7.47 -2.91 -0.02 4.21 16 33 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.13 3.99 7.96 -2.91 -0.02 3.97 16 Total: -1.00 -69.92 313.52 3.16 -66.76 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.28 Total: 31.57 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 3.17 Total: -19.49 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.06 Total: -77.31 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.07 Total: -40.49 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 1.84 Total: 38.96 kcal Total: -69.92 3.16 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298360161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.034 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds