Wall clock time and date at job start Mon Mar 30 2020 01:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.65194 * 0.02857 * 13 11 10 15 15 C 1.54320 * 107.27584 * 178.90682 * 14 13 11 16 16 C 1.55164 * 102.93794 * 337.80562 * 15 14 13 17 17 H 1.09003 * 110.99918 * 277.42991 * 16 15 14 18 18 C 1.52995 * 111.00332 * 153.61835 * 16 15 14 19 19 C 1.53000 * 109.47080 * 174.99764 * 18 16 15 20 20 C 1.53000 * 109.47376 * 179.97438 * 19 18 16 21 21 O 1.42894 * 109.47386 * 180.02562 * 20 19 18 22 22 C 1.47429 * 125.64889 * 179.71959 * 13 11 10 23 23 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 25 25 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 26 26 H 1.09008 * 109.88355 * 298.31971 * 14 13 11 27 27 H 1.09001 * 109.88156 * 59.48007 * 14 13 11 28 28 H 1.08992 * 110.72310 * 96.16795 * 15 14 13 29 29 H 1.08998 * 110.72087 * 219.44804 * 15 14 13 30 30 H 1.08997 * 109.47187 * 294.99550 * 18 16 15 31 31 H 1.09008 * 109.47276 * 54.99824 * 18 16 15 32 32 H 1.08996 * 109.47455 * 299.99993 * 19 18 16 33 33 H 1.09000 * 109.47218 * 60.00182 * 19 18 16 34 34 H 1.09006 * 109.46949 * 300.00535 * 20 19 18 35 35 H 1.09005 * 109.47202 * 59.99564 * 20 19 18 36 36 H 0.96700 * 113.99686 * 179.97438 * 21 20 19 37 37 H 1.08999 * 110.36406 * 323.00207 * 22 13 11 38 38 H 1.08998 * 110.36519 * 85.32594 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2273 -5.7162 0.0005 15 6 6.1962 -6.9170 -0.0273 16 6 7.4946 -6.3022 -0.6136 17 1 7.4502 -6.2604 -1.7020 18 6 8.7280 -7.0783 -0.1475 19 6 9.9728 -6.5226 -0.8421 20 6 11.2063 -7.2983 -0.3754 21 8 12.3690 -6.7790 -1.0237 22 6 7.4689 -4.8794 -0.0074 23 1 -0.4850 0.8401 0.0004 24 1 3.6440 -3.4315 0.8904 25 1 3.6433 -3.4318 -0.8896 26 1 4.6174 -5.7530 0.9032 27 1 4.5882 -5.7349 -0.8822 28 1 6.3696 -7.2960 0.9797 29 1 5.8152 -7.7050 -0.6769 30 1 8.8368 -6.9732 0.9319 31 1 8.6109 -8.1322 -0.4000 32 1 9.8640 -6.6277 -1.9215 33 1 10.0899 -5.4688 -0.5895 34 1 11.3149 -7.1929 0.7041 35 1 11.0895 -8.3524 -0.6275 36 1 13.1903 -7.2244 -0.7743 37 1 8.0446 -4.1920 -0.6272 38 1 7.8624 -4.8954 1.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299302589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:33 Heat of formation + Delta-G solvation = -103.154246 kcal Electronic energy + Delta-G solvation = -18422.316292 eV Core-core repulsion = 15390.291755 eV Total energy + Delta-G solvation = -3032.024537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96360 -37.93269 -37.14884 -34.35498 -32.42818 -31.34728 -29.69478 -28.65604 -25.74071 -25.40952 -23.36204 -21.66230 -20.58201 -19.37892 -17.71971 -17.69634 -16.67106 -16.50752 -15.94248 -15.18725 -14.93755 -14.56023 -14.40482 -13.87082 -13.82164 -13.60529 -12.96762 -12.87027 -12.75008 -12.60659 -12.37119 -11.89955 -11.75860 -11.43310 -11.25788 -11.03048 -10.99764 -10.90670 -10.86965 -10.57453 -10.34674 -9.84401 -9.49893 -8.99169 -8.54701 -8.48227 -6.90794 -6.27905 -3.99501 2.71867 2.97392 3.22919 3.34556 3.52225 3.61576 3.75191 4.21638 4.34542 4.36892 4.51872 4.65083 4.73559 4.80008 4.93102 5.01855 5.11171 5.11269 5.17210 5.24956 5.31940 5.39252 5.50763 5.52402 5.60441 5.68890 5.77402 5.80276 5.86745 5.94282 6.03137 6.05656 6.38386 7.23133 7.61477 7.95231 8.42537 8.46539 9.18357 10.81290 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039977 B = 0.003198 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.241190 B = 8754.384924 C = 9363.878990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.117 4.117 11 C 0.546 3.454 12 O -0.519 6.519 13 N -0.625 5.625 14 C 0.100 3.900 15 C -0.126 4.126 16 C -0.102 4.102 17 H 0.087 0.913 18 C -0.103 4.103 19 C -0.125 4.125 20 C 0.075 3.925 21 O -0.576 6.576 22 C 0.112 3.888 23 H 0.271 0.729 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.379 0.621 37 H 0.077 0.923 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.183 -19.510 0.127 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.267 4.267 11 C 0.334 3.666 12 O -0.393 6.393 13 N -0.363 5.363 14 C -0.024 4.024 15 C -0.164 4.164 16 C -0.121 4.121 17 H 0.105 0.895 18 C -0.141 4.141 19 C -0.162 4.162 20 C -0.003 4.003 21 O -0.381 6.381 22 C -0.011 4.011 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.096 0.904 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.653 -17.519 -0.139 25.590 hybrid contribution -0.523 -0.800 0.334 1.012 sum 18.130 -18.319 0.195 25.774 Atomic orbital electron populations 1.69941 1.05904 1.27754 1.48133 1.24716 0.94458 0.98973 0.93183 0.86730 0.81919 0.83244 0.79945 1.19202 1.15896 1.19941 1.22307 0.88226 0.97529 1.58724 0.89399 1.84790 1.09314 1.00156 1.97417 1.23252 0.93737 1.04118 1.05635 1.19987 0.90557 0.80698 0.75321 1.90704 1.58894 1.41239 1.48491 1.48467 1.07121 1.05285 1.75394 1.22029 0.94232 0.83838 1.02281 1.22696 0.94673 0.96975 1.02040 1.22356 0.94395 0.94410 1.00944 0.89496 1.21423 0.92638 0.99526 1.00521 1.21580 0.92389 1.00880 1.01377 1.22215 0.85789 0.96549 0.95715 1.86501 1.17557 1.63439 1.70618 1.22197 0.83061 0.95052 1.00764 0.91950 0.88618 0.88576 0.91145 0.91162 0.90408 0.89914 0.91287 0.91176 0.91057 0.90806 0.93669 0.93773 0.77466 0.90440 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.06 27.74 -169.99 -4.72 17.34 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.72 18.55 -107.50 -1.99 -5.72 16 10 C -0.12 -2.37 5.35 36.01 0.19 -2.18 16 11 C 0.55 10.45 7.87 -10.99 -0.09 10.36 16 12 O -0.52 -11.87 16.12 5.56 0.09 -11.78 16 13 N -0.63 -8.97 3.33 -170.66 -0.57 -9.54 16 14 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 15 C -0.13 -0.93 6.42 -24.89 -0.16 -1.09 16 16 C -0.10 -0.83 2.99 -88.59 -0.26 -1.09 16 17 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.10 -0.64 4.73 -26.73 -0.13 -0.77 16 19 C -0.12 -0.94 5.49 -26.73 -0.15 -1.08 16 20 C 0.07 0.49 7.05 37.16 0.26 0.76 16 21 O -0.58 -4.66 13.66 -35.23 -0.48 -5.14 16 22 C 0.11 1.32 5.85 -2.65 -0.02 1.30 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 25 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 26 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.41 7.97 -51.93 -0.41 0.00 16 31 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.38 1.27 9.12 45.56 0.42 1.69 16 37 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 38 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -35.71 328.66 -7.54 -43.25 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.45 Total: -2.47 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.15 Total: -4.91 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.21 Total: -35.53 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.39 Total: -16.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.71 -7.54 -43.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299302589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.908 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds