Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39390 * 120.15368 * 2 1 4 4 C 1.43195 * 120.07772 * 359.97438 * 3 2 1 5 5 N 3.48212 * 80.49744 * 359.97438 * 2 1 3 6 6 C 1.39726 * 119.84411 * 180.02562 * 3 2 1 7 7 C 1.38094 * 120.14679 * 359.97438 * 6 3 2 8 8 C 1.38048 * 120.31650 * 359.74904 * 7 6 3 9 9 C 1.39346 * 120.15442 * 180.02562 * 2 1 3 10 10 C 1.47750 * 120.07146 * 359.95600 * 9 2 1 11 11 O 1.21461 * 119.99924 * 354.05396 * 10 9 2 12 12 O 1.34710 * 119.99420 * 174.05738 * 10 9 2 13 13 C 1.45201 * 116.99710 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47435 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47145 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46773 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00160 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46783 * 89.99975 * 20 18 16 22 22 H 1.48499 * 109.47202 * 210.00118 * 20 18 16 23 23 H 1.48500 * 109.46929 * 330.00477 * 20 18 16 24 24 H 1.08998 * 109.46823 * 263.41842 * 1 2 3 25 25 H 1.09004 * 109.46891 * 23.41152 * 1 2 3 26 26 H 1.08994 * 109.47092 * 143.41580 * 1 2 3 27 27 H 1.08001 * 119.92656 * 180.02562 * 6 3 2 28 28 H 1.08004 * 119.83976 * 179.97438 * 7 6 3 29 29 H 1.07995 * 119.92629 * 180.25597 * 8 7 6 30 30 H 1.09004 * 109.47458 * 300.00221 * 13 12 10 31 31 H 1.09009 * 109.47130 * 59.99879 * 13 12 10 32 32 H 1.08999 * 109.46566 * 300.00300 * 14 13 12 33 33 H 1.08997 * 109.46757 * 59.99698 * 14 13 12 34 34 H 1.08997 * 109.46846 * 299.99490 * 15 14 13 35 35 H 1.08992 * 109.47337 * 59.99913 * 15 14 13 36 36 H 0.97001 * 120.00012 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2053 0.0000 4 6 1.4962 2.4483 -0.0006 5 7 0.9321 3.4343 -0.0015 6 6 3.6044 1.1977 -0.0005 7 6 4.2915 -0.0002 -0.0005 8 6 3.6045 -1.1975 0.0052 9 6 2.2070 -1.2049 -0.0005 10 6 1.4733 -2.4873 -0.0001 11 8 0.2637 -2.4949 0.1096 12 8 2.1460 -3.6481 -0.1214 13 6 1.3605 -4.8693 -0.1126 14 6 2.2906 -6.0752 -0.2591 15 6 1.4628 -7.3618 -0.2503 16 6 2.3791 -8.5496 -0.3940 17 1 3.4452 -8.4016 -0.4831 18 6 1.8564 -9.8253 -0.4118 19 7 0.5581 -10.0056 -0.3038 20 14 2.9921 -11.2977 -0.5906 21 1 3.4198 -11.7591 0.7546 22 1 2.2732 -12.3958 -1.2852 23 1 4.1860 -10.9084 -1.3831 24 1 -0.3633 -0.1178 1.0209 25 1 -0.3633 0.9431 -0.4083 26 1 -0.3633 -0.8252 -0.6125 27 1 4.1483 2.1308 -0.0001 28 1 5.3715 -0.0002 -0.0014 29 1 4.1482 -2.1306 0.0094 30 1 0.8151 -4.9437 0.8283 31 1 0.6533 -4.8524 -0.9420 32 1 2.8362 -6.0009 -1.1998 33 1 2.9974 -6.0917 0.5705 34 1 0.9169 -7.4362 0.6902 35 1 0.7563 -7.3450 -1.0802 36 1 0.1904 -10.9031 -0.3166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321238127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -63.734962 kcal Electronic energy + Delta-G solvation = -19222.864580 eV Core-core repulsion = 16057.105440 eV Total energy + Delta-G solvation = -3165.759140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83321 -40.25488 -37.87624 -37.51535 -35.92083 -33.87998 -33.70668 -32.71550 -29.19720 -28.35551 -25.81523 -25.03936 -23.79702 -22.15496 -21.78837 -20.08296 -18.63527 -18.05476 -17.68155 -17.25042 -16.76297 -16.70422 -16.44464 -15.86208 -15.25448 -15.02293 -14.52734 -14.26584 -14.15574 -14.06899 -13.98366 -13.72847 -13.70329 -13.40385 -13.02932 -12.88396 -12.79989 -12.49321 -12.40789 -12.25874 -12.03259 -11.61877 -11.37357 -11.28055 -11.10391 -10.55056 -10.17910 -9.88683 -8.19691 -6.30923 -0.50289 -0.17993 1.33712 1.40997 1.44375 1.44924 1.56072 1.67352 1.96410 2.43311 2.74945 2.75659 3.14597 3.48843 3.57883 3.85759 3.97954 4.05249 4.10104 4.26819 4.44179 4.51704 4.57288 4.60326 4.64836 4.84604 4.89583 5.03957 5.12443 5.18479 5.24302 5.25916 5.47682 5.56030 5.67684 5.68147 5.83237 6.21562 6.35626 6.66383 6.85754 7.38755 8.92498 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044132 B = 0.002810 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.315014 B = 9963.746790 C =10560.674858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.021 3.979 3 C -0.057 4.057 4 C 0.281 3.719 5 N -0.456 5.456 6 C -0.013 4.013 7 C -0.123 4.123 8 C -0.022 4.022 9 C -0.145 4.145 10 C 0.500 3.500 11 O -0.528 6.528 12 O -0.348 6.348 13 C 0.080 3.920 14 C -0.093 4.093 15 C 0.024 3.976 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.260 1.260 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H -0.004 1.004 35 H -0.004 1.004 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.277 22.039 0.625 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.018 3.982 3 C -0.060 4.060 4 C -0.033 4.033 5 N -0.132 5.132 6 C -0.033 4.033 7 C -0.140 4.140 8 C -0.040 4.040 9 C -0.147 4.147 10 C 0.347 3.653 11 O -0.420 6.420 12 O -0.264 6.264 13 C 0.006 3.994 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.191 0.809 28 H 0.201 0.799 29 H 0.176 0.824 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.911 23.398 0.653 25.046 hybrid contribution -0.376 -1.559 -0.020 1.604 sum 8.536 21.839 0.633 23.456 Atomic orbital electron populations 1.21174 0.90294 1.03137 1.04071 1.19948 0.96497 0.90474 0.91252 1.15750 0.93411 0.84721 1.12122 1.25598 0.92650 0.92476 0.92597 1.81301 1.09002 1.12460 1.10432 1.21867 0.90337 1.01288 0.89814 1.21523 1.02755 0.89681 1.00043 1.22044 0.91315 1.01524 0.89152 1.18778 0.94816 0.88308 1.12759 1.21585 0.85907 0.85262 0.72574 1.90795 1.16244 1.88072 1.46843 1.86494 1.41952 1.14941 1.83025 1.23158 0.94010 0.80305 1.01898 1.21447 0.97948 0.90947 1.02683 1.18944 0.95035 0.91884 0.95417 1.21638 0.94351 0.91882 1.49960 0.91470 1.26013 0.96639 1.02595 0.94793 1.70103 1.13082 1.22900 1.51442 0.85403 0.78776 0.78054 0.78553 1.19768 1.21060 1.18391 0.89879 0.91752 0.89496 0.80927 0.79926 0.82361 0.91834 0.91885 0.91259 0.91154 0.98570 0.98583 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.42 71.24 0.60 -2.20 16 2 C 0.02 0.40 5.95 -19.32 -0.11 0.29 16 3 C -0.06 -0.81 5.73 -21.40 -0.12 -0.93 16 4 C 0.28 5.10 13.69 88.33 1.21 6.31 16 5 N -0.46 -10.50 18.54 19.00 0.35 -10.14 16 6 C -0.01 -0.09 9.75 22.60 0.22 0.13 16 7 C -0.12 -0.76 10.01 22.19 0.22 -0.53 16 8 C -0.02 -0.27 9.61 22.59 0.22 -0.06 16 9 C -0.15 -2.88 5.87 -20.13 -0.12 -3.00 16 10 C 0.50 13.87 7.83 70.34 0.55 14.42 16 11 O -0.53 -17.36 13.12 19.96 0.26 -17.10 16 12 O -0.35 -10.22 9.48 -56.20 -0.53 -10.76 16 13 C 0.08 2.76 5.48 71.98 0.39 3.16 16 14 C -0.09 -3.60 5.53 30.59 0.17 -3.43 16 15 C 0.02 1.24 4.97 29.85 0.15 1.39 16 16 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 17 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.94 -56.28 13.29 21.45 0.28 -56.00 16 20 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.27 6.86 -2.38 -0.02 1.26 16 26 H 0.09 2.21 5.84 -2.39 -0.01 2.19 16 27 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 28 H 0.18 -0.17 8.06 -2.91 -0.02 -0.20 16 29 H 0.16 1.77 7.61 -2.91 -0.02 1.75 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -69.51 322.15 7.56 -61.95 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 1.09 Total: 0.57 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.07 Total: -13.69 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.64 Total: -66.14 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.27 Total: -27.86 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.51 7.56 -61.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321238127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.780 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds