Wall clock time and date at job start Mon Mar 30 2020 01:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47034 * 2 1 4 4 O 1.33804 * 125.07076 * 269.95459 * 3 2 1 5 5 C 1.34910 * 111.34709 * 180.02562 * 4 3 2 6 6 C 1.38964 * 133.11834 * 179.97438 * 5 4 3 7 7 C 1.37844 * 119.97369 * 180.02562 * 6 5 4 8 8 C 1.38685 * 120.65602 * 0.02562 * 7 6 5 9 9 C 1.37836 * 120.20186 * 0.02562 * 8 7 6 10 10 C 1.39113 * 119.62465 * 359.97438 * 9 8 7 11 11 C 1.36047 * 125.07623 * 89.99825 * 3 2 1 12 12 C 1.47084 * 127.13780 * 359.97438 * 11 3 2 13 13 O 1.21655 * 120.00073 * 269.99537 * 12 11 3 14 14 N 1.34777 * 120.00209 * 89.99536 * 12 11 3 15 15 C 1.46506 * 120.00028 * 179.97438 * 14 12 11 16 16 C 1.50691 * 109.46907 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00278 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99748 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99783 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47623 * 89.99704 * 20 18 16 22 22 H 1.48504 * 109.47265 * 209.99927 * 20 18 16 23 23 H 1.48504 * 109.46858 * 329.99536 * 20 18 16 24 24 H 1.08998 * 109.47281 * 300.00439 * 1 2 3 25 25 H 1.09007 * 109.47208 * 60.00174 * 1 2 3 26 26 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46842 * 239.99716 * 2 1 3 28 28 H 1.09002 * 109.46767 * 119.99668 * 2 1 3 29 29 H 1.08005 * 120.01545 * 0.02562 * 6 5 4 30 30 H 1.08009 * 119.67009 * 180.27566 * 7 6 5 31 31 H 1.07996 * 119.89836 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.18909 * 179.97438 * 9 8 7 33 33 H 0.96994 * 120.00102 * 0.02562 * 14 12 11 34 34 H 1.08996 * 109.46956 * 300.00450 * 15 14 12 35 35 H 1.09001 * 109.46372 * 60.00288 * 15 14 12 36 36 H 0.97003 * 119.99868 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2894 2.1454 -1.0951 5 6 2.7265 3.3810 -0.7751 6 6 3.1155 4.4774 -1.5351 7 6 3.5259 5.6365 -0.9121 8 6 3.5562 5.7230 0.4717 9 6 3.1751 4.6455 1.2422 10 6 2.7592 3.4708 0.6240 11 6 2.2929 2.1580 1.1134 12 6 2.1426 1.7346 2.5139 13 8 1.0873 1.9111 3.0929 14 7 3.1740 1.1510 3.1560 15 6 3.0244 0.7298 4.5512 16 6 4.3125 0.1115 5.0300 17 1 5.1582 0.0399 4.3621 18 6 4.4115 -0.3627 6.3209 19 7 5.5355 -0.9028 6.7386 20 14 2.9487 -0.2395 7.4759 21 1 2.1172 -1.4637 7.3542 22 1 3.4316 -0.1060 8.8739 23 1 2.1343 0.9496 7.1180 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0964 4.4213 -2.6135 30 1 3.8229 6.4872 -1.5077 31 1 3.8802 6.6370 0.9470 32 1 3.1991 4.7129 2.3199 33 1 4.0155 1.0106 2.6945 34 1 2.7859 1.5958 5.1685 35 1 2.2200 -0.0020 4.6254 36 1 5.6053 -1.2361 7.6469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322241742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:44 Heat of formation + Delta-G solvation = -41.008247 kcal Electronic energy + Delta-G solvation = -20303.082278 eV Core-core repulsion = 17138.308643 eV Total energy + Delta-G solvation = -3164.773636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.68408 -40.45904 -38.93774 -36.24729 -35.37719 -34.44721 -33.38537 -31.45351 -30.36993 -29.44843 -25.77449 -24.88124 -23.88585 -23.25684 -22.20666 -21.20950 -19.50458 -18.46444 -18.06765 -17.56320 -17.03663 -16.98792 -16.50291 -16.05007 -15.90185 -15.22178 -15.18109 -14.89194 -14.71630 -14.32852 -14.31888 -13.92899 -13.59457 -13.21552 -13.11848 -12.93314 -12.73112 -12.56159 -12.17675 -11.96717 -11.90804 -11.71130 -11.31082 -11.04877 -10.94435 -10.09339 -9.68083 -9.22273 -8.42181 -6.50204 -0.21074 0.28686 0.96719 1.31286 1.34005 1.38818 1.45393 1.46781 2.26139 2.36096 2.68191 2.92791 3.20983 3.55230 3.87692 3.93753 4.00581 4.10046 4.15911 4.25361 4.35112 4.47235 4.54433 4.71170 4.82403 4.87264 4.92751 4.95603 5.06220 5.18957 5.20019 5.23177 5.33737 5.35647 5.45206 5.62183 6.03071 6.04258 6.48259 6.66902 7.07001 7.22216 8.72645 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.004989 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.896114 B = 5610.492748 C = 6387.783099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C 0.098 3.902 4 O -0.181 6.181 5 C 0.030 3.970 6 C -0.100 4.100 7 C -0.086 4.086 8 C -0.120 4.120 9 C -0.102 4.102 10 C -0.124 4.124 11 C -0.253 4.253 12 C 0.587 3.413 13 O -0.584 6.584 14 N -0.691 5.691 15 C 0.232 3.768 16 C -0.549 4.549 17 H 0.057 0.943 18 C 0.030 3.970 19 N -0.929 5.929 20 Si 0.937 3.063 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.262 1.262 24 H 0.037 0.963 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.180 0.820 31 H 0.159 0.841 32 H 0.113 0.887 33 H 0.407 0.593 34 H 0.014 0.986 35 H 0.020 0.980 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 9.410 -19.100 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 C 0.047 3.953 4 O -0.082 6.082 5 C -0.017 4.017 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.138 4.138 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.258 4.258 12 C 0.373 3.627 13 O -0.465 6.465 14 N -0.339 5.339 15 C 0.109 3.891 16 C -0.587 4.587 17 H 0.075 0.925 18 C -0.171 4.171 19 N -0.568 5.568 20 Si 0.760 3.240 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.186 1.186 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.141 0.859 28 H 0.109 0.891 29 H 0.182 0.818 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.131 0.869 33 H 0.242 0.758 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.313 9.344 -18.776 21.902 hybrid contribution 0.095 -0.272 1.192 1.226 sum -6.218 9.072 -17.584 20.741 Atomic orbital electron populations 1.21766 0.92302 1.04098 1.02142 1.20543 0.97762 0.84916 1.06079 1.22980 0.95547 0.94773 0.81965 1.83760 1.69035 1.22205 1.33170 1.19977 1.02810 0.85980 0.92896 1.20445 1.01311 0.88918 1.01131 1.21450 0.97133 0.97420 0.94347 1.21452 0.99426 0.98393 0.94500 1.20718 0.99081 0.91932 1.00302 1.19720 1.04716 0.94183 0.93888 1.20627 1.15402 0.96524 0.93200 1.17501 0.83234 0.76789 0.85185 1.90731 1.29135 1.57707 1.68948 1.46076 1.15036 1.58773 1.14033 1.19206 0.96499 0.94377 0.79034 1.21219 0.97867 1.40721 0.98864 0.92476 1.25574 0.98625 0.93561 0.99304 1.69979 1.27453 1.40362 1.18978 0.85866 0.79656 0.79949 0.78512 1.18576 1.19659 1.18605 0.94401 0.91069 0.88766 0.85903 0.89083 0.81785 0.80247 0.82292 0.86909 0.75812 0.96782 0.96240 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.89 71.98 0.71 -2.49 16 2 C -0.06 -1.32 6.25 29.85 0.19 -1.13 16 3 C 0.10 2.91 6.55 25.18 0.16 3.08 16 4 O -0.18 -5.04 10.53 -3.83 -0.04 -5.08 16 5 C 0.03 0.81 7.39 22.93 0.17 0.98 16 6 C -0.10 -1.89 10.06 22.35 0.22 -1.67 16 7 C -0.09 -1.34 10.01 22.28 0.22 -1.11 16 8 C -0.12 -2.39 10.04 22.28 0.22 -2.16 16 9 C -0.10 -2.95 10.09 22.38 0.23 -2.73 16 10 C -0.12 -4.03 6.39 -20.09 -0.13 -4.15 16 11 C -0.25 -9.09 6.06 -18.98 -0.12 -9.21 16 12 C 0.59 25.09 7.20 86.56 0.62 25.71 16 13 O -0.58 -28.96 17.11 -4.21 -0.07 -29.03 16 14 N -0.69 -30.20 5.54 -470.43 -2.61 -32.81 16 15 C 0.23 11.70 4.49 85.63 0.38 12.09 16 16 C -0.55 -30.78 9.83 25.60 0.25 -30.53 16 17 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 18 C 0.03 1.71 5.47 84.66 0.46 2.17 16 19 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 20 Si 0.94 44.05 27.47 68.60 1.88 45.93 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.37 7.86 -2.39 -0.02 2.35 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.41 16.36 8.30 -92.71 -0.77 15.59 16 34 H 0.01 0.75 7.20 -2.39 -0.02 0.74 16 35 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.73 316.98 3.35 -69.38 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.28 Total: 18.10 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.61 Total: -11.17 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -2.31 Total: -88.13 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.11 Total: -34.11 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -72.73 3.35 -69.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322241742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.374 kcal (2) G-P(sol) polarization free energy of solvation -72.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds