Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37971 * 119.92260 * 2 1 4 4 C 1.39616 * 119.84000 * 180.23386 * 3 2 1 5 5 C 1.43205 * 120.14614 * 179.74514 * 4 3 2 6 6 N 4.80119 * 134.70147 * 359.74911 * 2 1 3 7 7 C 1.39652 * 119.70181 * 359.46945 * 4 3 2 8 8 C 1.37927 * 119.84339 * 0.27670 * 7 4 3 9 9 C 1.38342 * 119.92268 * 179.72534 * 2 1 3 10 10 C 1.50696 * 119.85000 * 0.02562 * 9 2 1 11 11 O 1.45200 * 109.47322 * 180.02562 * 10 9 2 12 12 C 1.34232 * 117.00041 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99935 * 179.97438 * 12 11 10 15 15 H 1.08997 * 109.47036 * 300.00147 * 14 12 11 16 16 C 1.52999 * 109.46689 * 60.00222 * 14 12 11 17 17 C 1.50700 * 109.46960 * 180.02562 * 14 12 11 18 18 H 1.07997 * 119.99858 * 359.97438 * 17 14 12 19 19 C 1.37873 * 119.99533 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00456 * 359.97438 * 19 17 14 21 21 Si 1.86809 * 119.99818 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47160 * 59.99343 * 21 19 17 23 23 H 1.48494 * 109.47321 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46848 * 299.99623 * 21 19 17 25 25 H 1.09005 * 109.46988 * 270.27392 * 1 2 3 26 26 H 1.08997 * 109.47313 * 30.28022 * 1 2 3 27 27 H 1.09002 * 109.47286 * 150.27466 * 1 2 3 28 28 H 1.07990 * 120.07818 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.07286 * 180.29644 * 7 4 3 30 30 H 1.08001 * 119.91632 * 180.02562 * 8 7 4 31 31 H 1.09004 * 109.46716 * 300.01979 * 10 9 2 32 32 H 1.09000 * 109.47309 * 60.01902 * 10 9 2 33 33 H 1.09001 * 109.46775 * 180.02562 * 16 14 12 34 34 H 1.08999 * 109.46883 * 299.99536 * 16 14 12 35 35 H 1.08994 * 109.47666 * 59.99699 * 16 14 12 36 36 H 0.97005 * 120.00415 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1958 0.0000 4 6 3.5914 1.1938 -0.0049 5 6 4.3123 2.4311 -0.0105 6 7 4.8842 3.4126 -0.0149 7 6 4.2816 -0.0202 0.0014 8 6 3.5808 -1.2082 0.0067 9 6 2.1971 -1.1990 0.0057 10 6 1.4384 -2.5010 0.0114 11 8 2.3776 -3.6084 0.0174 12 6 1.8596 -4.8468 0.0235 13 8 0.6611 -5.0003 0.0242 14 6 2.7728 -6.0455 0.0294 15 1 3.4017 -6.0275 -0.8606 16 6 3.6555 -6.0079 1.2786 17 6 1.9470 -7.3061 0.0350 18 1 0.8687 -7.2452 0.0347 19 6 2.5681 -8.5370 0.0414 20 7 3.8811 -8.6111 0.0423 21 14 1.5444 -10.0996 0.0476 22 1 0.6889 -10.1357 -1.1656 23 1 2.4443 -11.2809 0.0535 24 1 0.6863 -10.1244 1.2593 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8874 -0.5182 27 1 -0.3634 -0.8924 -0.5096 28 1 1.6553 2.1310 -0.0004 29 1 5.3615 -0.0287 0.0024 30 1 4.1135 -2.1477 0.0120 31 1 0.8109 -2.5520 0.9013 32 1 0.8121 -2.5606 -0.8787 33 1 4.3163 -6.8748 1.2826 34 1 4.2528 -5.0962 1.2740 35 1 3.0266 -6.0259 2.1686 36 1 4.3180 -9.4771 0.0465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327996794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -61.554490 kcal Electronic energy + Delta-G solvation = -19677.840389 eV Core-core repulsion = 16512.175801 eV Total energy + Delta-G solvation = -3165.664588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48833 -40.56129 -37.88424 -37.25376 -35.88594 -34.20845 -33.01846 -32.44237 -28.67640 -27.64566 -27.23584 -25.07534 -23.26481 -22.89127 -21.42496 -19.24417 -18.61055 -18.05392 -17.74789 -17.30902 -16.59893 -16.47608 -15.75200 -15.41358 -15.24476 -14.87624 -14.58972 -14.37568 -14.14553 -14.04941 -13.97488 -13.60647 -13.36545 -13.12054 -12.94476 -12.77457 -12.70496 -12.57166 -12.26387 -12.19247 -12.04000 -11.94620 -11.75670 -11.08298 -11.01182 -10.50141 -9.85181 -9.63839 -8.17402 -6.30240 -0.29877 0.35849 1.45099 1.45754 1.48986 1.54086 1.57906 1.85525 1.86778 2.46053 2.80386 2.82227 3.13210 3.60392 3.85038 3.91197 4.13644 4.24738 4.28888 4.29857 4.53761 4.65823 4.74178 4.82261 4.87092 4.94805 4.99718 5.03702 5.20070 5.28292 5.29852 5.44108 5.52459 5.60311 5.73223 5.82414 5.93290 6.14829 6.40500 6.76239 7.08050 7.38732 8.88559 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035769 B = 0.003470 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.607806 B = 8067.639746 C = 8750.612980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.060 4.060 4 C -0.036 4.036 5 C 0.283 3.717 6 N -0.463 5.463 7 C -0.068 4.068 8 C -0.106 4.106 9 C -0.065 4.065 10 C 0.095 3.905 11 O -0.356 6.356 12 C 0.477 3.523 13 O -0.541 6.541 14 C 0.050 3.950 15 H 0.053 0.947 16 C -0.122 4.122 17 C -0.539 4.539 18 H 0.057 0.943 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 0.960 3.040 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.274 1.274 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 16.614 0.389 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.080 4.080 4 C -0.039 4.039 5 C -0.031 4.031 6 N -0.139 5.139 7 C -0.088 4.088 8 C -0.124 4.124 9 C -0.066 4.066 10 C 0.022 3.978 11 O -0.273 6.273 12 C 0.322 3.678 13 O -0.430 6.430 14 C 0.031 3.969 15 H 0.070 0.930 16 C -0.180 4.180 17 C -0.577 4.577 18 H 0.075 0.925 19 C -0.176 4.176 20 N -0.547 5.547 21 Si 0.785 3.215 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.199 1.199 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.177 0.823 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.216 18.004 0.382 18.144 hybrid contribution -0.643 -1.388 -0.057 1.531 sum -2.859 16.617 0.325 16.864 Atomic orbital electron populations 1.20967 0.88820 1.04308 1.03908 1.19660 0.97543 0.90741 0.99805 1.21175 0.91294 0.98873 0.96657 1.16032 0.92676 0.86312 1.08899 1.25796 0.92500 0.92537 0.92292 1.81277 1.09733 1.12229 1.10684 1.21305 1.01184 0.89886 0.96470 1.21066 0.93465 0.99007 0.98869 1.19776 0.94508 0.92833 0.99474 1.21879 0.90597 0.81892 1.03448 1.86509 1.41266 1.15228 1.84337 1.24759 0.89128 0.84048 0.69844 1.90490 1.18563 1.86761 1.47175 1.18665 0.93258 0.86613 0.98315 0.92961 1.21571 0.99088 1.01920 0.95375 1.21249 0.93437 0.90494 1.52518 0.92471 1.25598 0.96141 1.01729 0.94181 1.69944 1.08701 1.26022 1.50054 0.85576 0.78576 0.78541 0.78777 1.19943 1.20127 1.19894 0.89524 0.88878 0.91476 0.82296 0.83268 0.84307 0.89495 0.89463 0.90611 0.92850 0.95289 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.59 71.24 0.68 -0.80 16 2 C -0.08 -1.23 5.87 -19.90 -0.12 -1.35 16 3 C -0.06 -0.83 9.41 22.54 0.21 -0.62 16 4 C -0.04 -0.59 5.73 -21.36 -0.12 -0.71 16 5 C 0.28 5.55 15.33 88.33 1.35 6.90 16 6 N -0.46 -11.32 18.54 19.00 0.35 -10.97 16 7 C -0.07 -1.17 9.76 22.54 0.22 -0.95 16 8 C -0.11 -2.21 9.36 22.23 0.21 -2.00 16 9 C -0.07 -1.37 5.89 -19.81 -0.12 -1.49 16 10 C 0.10 2.52 4.56 71.23 0.32 2.85 16 11 O -0.36 -12.33 8.58 -51.44 -0.44 -12.77 16 12 C 0.48 20.80 7.25 71.24 0.52 21.32 16 13 O -0.54 -25.91 15.21 21.95 0.33 -25.58 16 14 C 0.05 2.46 2.74 -12.29 -0.03 2.42 16 15 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 16 C -0.12 -5.43 8.90 71.98 0.64 -4.79 16 17 C -0.54 -29.59 8.37 25.60 0.21 -29.38 16 18 H 0.06 3.29 6.76 -2.91 -0.02 3.27 16 19 C 0.02 1.26 5.30 84.65 0.45 1.71 16 20 N -0.91 -49.24 11.32 21.44 0.24 -48.99 16 21 Si 0.96 42.77 29.54 68.60 2.03 44.79 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 27 H 0.07 0.92 6.62 -2.39 -0.02 0.90 16 28 H 0.16 1.40 8.06 -2.92 -0.02 1.37 16 29 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.14 3.17 6.97 -2.91 -0.02 3.15 16 31 H 0.09 2.25 8.13 -2.38 -0.02 2.23 16 32 H 0.09 2.25 7.47 -2.39 -0.02 2.24 16 33 H 0.08 3.71 6.07 -2.39 -0.01 3.70 16 34 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -62.92 319.63 8.05 -54.87 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.10 Total: 5.53 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.43 Total: -6.89 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.60 Total: -59.97 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.11 Total: -38.35 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -62.92 8.05 -54.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327996794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.682 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds