Wall clock time and date at job start Mon Mar 30 2020 01:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48496 * 109.47125 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 119.99726 * 3 2 1 6 6 H 1.48498 * 109.47140 * 239.99937 * 3 2 1 7 7 C 1.37876 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00434 * 14.36804 * 7 2 1 9 9 C 1.50705 * 119.99899 * 194.36987 * 7 2 1 10 10 O 1.42897 * 112.94366 * 65.59876 * 9 7 2 11 11 C 1.53943 * 113.74171 * 294.00684 * 9 7 2 12 12 N 1.47814 * 86.03489 * 222.08674 * 11 9 7 13 13 C 1.34777 * 134.45384 * 204.64341 * 12 11 9 14 14 O 1.21280 * 120.00298 * 179.86512 * 13 12 11 15 15 C 1.50703 * 119.99919 * 359.86683 * 13 12 11 16 16 F 1.39903 * 109.54589 * 55.00251 * 15 13 12 17 17 C 1.53178 * 109.54669 * 294.82079 * 15 13 12 18 18 C 1.53100 * 109.16089 * 183.24116 * 17 15 13 19 19 O 1.42907 * 109.48349 * 57.47493 * 18 17 15 20 20 C 1.42902 * 114.10117 * 298.88679 * 19 18 17 21 21 C 1.53093 * 109.41271 * 61.15878 * 20 19 18 22 22 C 1.47572 * 91.05445 * 24.54975 * 12 11 9 23 23 H 0.96997 * 119.99603 * 174.86953 * 1 2 3 24 24 H 0.96694 * 114.00247 * 305.73617 * 10 9 7 25 25 H 1.09002 * 113.76658 * 336.34670 * 11 9 7 26 26 H 1.09000 * 113.77133 * 107.74672 * 11 9 7 27 27 H 1.09000 * 109.52067 * 303.06064 * 17 15 13 28 28 H 1.08994 * 109.51749 * 63.24403 * 17 15 13 29 29 H 1.08997 * 109.40810 * 297.49561 * 18 17 15 30 30 H 1.08999 * 109.49137 * 177.50720 * 18 17 15 31 31 H 1.09007 * 109.48134 * 301.18240 * 20 19 18 32 32 H 1.08996 * 109.49624 * 181.14889 * 20 19 18 33 33 H 1.09000 * 109.52539 * 182.48883 * 21 20 19 34 34 H 1.08998 * 109.52011 * 62.29714 * 21 20 19 35 35 H 1.09001 * 113.77187 * 221.15624 * 22 12 11 36 36 H 1.08998 * 113.77370 * 89.75206 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4899 -2.1148 -0.2311 9 6 3.4762 -1.2143 0.3245 10 8 3.7553 -0.8306 1.6724 11 6 4.3504 -0.4946 -0.7185 12 7 5.2851 -1.6296 -0.5674 13 6 6.6081 -1.7956 -0.7643 14 8 7.1228 -2.8725 -0.5496 15 6 7.4478 -0.6428 -1.2513 16 9 7.2838 0.4507 -0.3942 17 6 7.0122 -0.2537 -2.6674 18 6 7.9231 0.8630 -3.1843 19 8 9.2822 0.4227 -3.1524 20 6 9.7579 0.0917 -1.8462 21 6 8.9222 -1.0575 -1.2763 22 6 4.1892 -2.5070 -0.1123 23 1 -0.4849 -0.8367 -0.0751 24 1 3.3824 0.0258 1.9227 25 1 3.8932 -0.4306 -1.7059 26 1 4.7535 0.4571 -0.3724 27 1 7.0918 -1.1202 -3.3239 28 1 5.9801 0.0959 -2.6477 29 1 7.8113 1.7435 -2.5516 30 1 7.6461 1.1136 -4.2083 31 1 9.6701 0.9622 -1.1959 32 1 10.8026 -0.2134 -1.9059 33 1 9.2547 -1.2820 -0.2628 34 1 9.0416 -1.9406 -1.9039 35 1 4.4638 -3.1589 0.7170 36 1 3.6846 -3.0352 -0.9212 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330687199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:23 Heat of formation + Delta-G solvation = -161.230179 kcal Electronic energy + Delta-G solvation = -22621.683109 eV Core-core repulsion = 19020.927034 eV Total energy + Delta-G solvation = -3600.756075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.17210 -41.53262 -40.08167 -39.15344 -36.10592 -34.67770 -34.28120 -32.38295 -30.75845 -27.94385 -27.16273 -26.02187 -24.80819 -22.36683 -21.30346 -20.53215 -19.96487 -18.68421 -18.12037 -17.54254 -17.29287 -17.00965 -16.60364 -16.46206 -16.27017 -15.82901 -15.38735 -15.28172 -14.82493 -14.50345 -14.37906 -13.88551 -13.76813 -13.65908 -13.62168 -13.48101 -12.97460 -12.53561 -12.49702 -12.19945 -11.88464 -11.75883 -11.70258 -11.33774 -11.13054 -10.94977 -10.66647 -10.34476 -9.84752 -8.84889 -6.61477 1.18632 1.41161 1.46227 1.49791 1.69722 2.39870 2.76553 2.86771 2.91244 3.12006 3.18232 3.40188 3.52784 3.66992 3.76098 4.12438 4.15504 4.24105 4.27027 4.38004 4.44539 4.51503 4.54394 4.55354 4.65108 4.69958 4.82934 4.90406 4.91301 5.03683 5.57572 5.89794 6.09749 6.38866 6.48735 6.73698 6.89498 7.24187 8.50564 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026468 B = 0.006458 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.635431 B = 4334.849898 C = 4867.309534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 1.065 2.935 4 H -0.286 1.286 5 H -0.251 1.251 6 H -0.233 1.233 7 C -0.621 4.621 8 H 0.036 0.964 9 C 0.191 3.809 10 O -0.574 6.574 11 C 0.068 3.932 12 N -0.622 5.622 13 C 0.510 3.490 14 O -0.570 6.570 15 C 0.112 3.888 16 F -0.195 7.195 17 C -0.175 4.175 18 C 0.064 3.936 19 O -0.389 6.389 20 C 0.064 3.936 21 C -0.156 4.156 22 C 0.124 3.876 23 H 0.259 0.741 24 H 0.374 0.626 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.194 5.129 -6.396 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.206 4.206 3 Si 0.885 3.115 4 H -0.212 1.212 5 H -0.176 1.176 6 H -0.157 1.157 7 C -0.658 4.658 8 H 0.054 0.946 9 C 0.150 3.850 10 O -0.384 6.384 11 C -0.055 4.055 12 N -0.354 5.354 13 C 0.298 3.702 14 O -0.451 6.451 15 C 0.091 3.909 16 F -0.176 7.176 17 C -0.213 4.213 18 C -0.012 4.012 19 O -0.308 6.308 20 C -0.012 4.012 21 C -0.194 4.194 22 C 0.002 3.998 23 H 0.068 0.932 24 H 0.225 0.775 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.877 5.595 -6.392 18.894 hybrid contribution -1.220 -1.791 0.582 2.243 sum 15.657 3.804 -5.810 17.128 Atomic orbital electron populations 1.70948 1.08154 1.30627 1.45437 1.27231 0.96100 1.06021 0.91232 0.83915 0.75327 0.71859 0.80437 1.21171 1.17621 1.15684 1.22245 0.94230 0.95604 1.53760 0.94601 1.20380 0.92212 0.92186 0.80238 1.86358 1.79372 1.42348 1.30283 1.24675 0.87475 0.90940 1.02367 1.50154 1.05195 1.16376 1.63701 1.21038 0.81446 0.90106 0.77574 1.90654 1.72080 1.28815 1.53517 1.21264 0.97430 0.81502 0.90744 1.92881 1.96781 1.55426 1.72479 1.22879 1.02788 1.03103 0.92502 1.22704 0.80281 0.94166 1.04065 1.87933 1.27596 1.86195 1.29042 1.22733 0.98995 0.95483 0.84033 1.22604 0.90568 1.01630 1.04630 1.23288 0.83383 0.94876 0.98268 0.93160 0.77497 0.87166 0.89460 0.88400 0.88658 0.91679 0.85321 0.91816 0.85451 0.89420 0.88744 0.91460 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.12 13.70 21.45 0.29 -51.83 16 2 C 0.00 -0.22 5.44 84.65 0.46 0.24 16 3 Si 1.07 41.59 24.55 68.60 1.68 43.27 16 4 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.25 -8.67 5.81 99.48 0.58 -8.09 16 6 H -0.23 -7.63 6.48 99.48 0.64 -6.98 16 7 C -0.62 -31.71 9.04 25.60 0.23 -31.48 16 8 H 0.04 2.03 8.06 -2.91 -0.02 2.00 16 9 C 0.19 8.39 1.07 -10.88 -0.01 8.38 16 10 O -0.57 -25.87 13.47 -148.98 -2.01 -27.87 16 11 C 0.07 2.50 3.89 86.44 0.34 2.83 16 12 N -0.62 -23.83 3.59 -839.68 -3.02 -26.85 16 13 C 0.51 18.83 7.06 87.66 0.62 19.45 16 14 O -0.57 -24.02 16.66 -3.03 -0.05 -24.07 16 15 C 0.11 3.20 0.88 -11.42 -0.01 3.19 16 16 F -0.20 -5.88 15.32 44.97 0.69 -5.19 16 17 C -0.17 -4.01 5.10 30.69 0.16 -3.85 16 18 C 0.06 1.19 6.72 72.02 0.48 1.67 16 19 O -0.39 -8.06 10.77 -148.98 -1.60 -9.67 16 20 C 0.06 1.19 6.72 72.01 0.48 1.68 16 21 C -0.16 -3.77 4.56 30.69 0.14 -3.63 16 22 C 0.12 5.11 8.23 86.49 0.71 5.82 16 23 H 0.26 15.02 8.73 -92.71 -0.81 14.21 16 24 H 0.37 15.34 6.06 -74.06 -0.45 14.89 16 25 H 0.11 3.79 7.93 -2.39 -0.02 3.77 16 26 H 0.09 2.99 6.33 -2.39 -0.02 2.98 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.17 6.79 -2.39 -0.02 2.16 16 29 H 0.06 1.16 7.93 -2.39 -0.02 1.14 16 30 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.14 7.93 -2.38 -0.02 1.12 16 32 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.35 7.96 -2.39 -0.02 2.33 16 35 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.10 4.03 8.09 -2.39 -0.02 4.01 16 Total: -1.00 -64.70 292.70 0.01 -64.69 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.42 Total: 33.21 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 3.60 Total: 4.31 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.72 Total: -78.67 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -3.66 Total: -61.61 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.69 Total: -5.19 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.68 Total: 43.27 kcal Total: -64.70 0.01 -64.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330687199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.540 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds