Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47129 * 80.36549 * 3 2 1 5 5 C 1.37196 * 119.99650 * 264.11562 * 4 3 2 6 6 H 1.08001 * 119.99660 * 142.59814 * 5 4 3 7 7 C 1.38882 * 120.00225 * 322.59711 * 5 4 3 8 8 N 1.31468 * 120.00205 * 158.14497 * 7 5 4 9 9 Si 1.86803 * 119.99970 * 338.14856 * 7 5 4 10 10 H 1.48499 * 109.46974 * 95.71016 * 9 7 5 11 11 H 1.48505 * 109.47051 * 215.70930 * 9 7 5 12 12 H 1.48498 * 109.47042 * 335.71030 * 9 7 5 13 13 C 1.34778 * 120.00025 * 84.11716 * 4 3 2 14 14 O 1.21501 * 119.99617 * 180.02562 * 13 4 3 15 15 O 1.34668 * 120.00025 * 0.02562 * 13 4 3 16 16 C 1.45197 * 116.99567 * 179.97438 * 15 13 4 17 17 C 1.50710 * 109.46792 * 179.97438 * 16 15 13 18 18 C 1.38263 * 119.99597 * 0.02562 * 17 16 15 19 19 C 1.38217 * 119.99584 * 179.97438 * 18 17 16 20 20 C 1.38260 * 119.99814 * 0.02562 * 19 18 17 21 21 C 1.38213 * 120.00297 * 359.97438 * 20 19 18 22 22 C 1.38204 * 120.00093 * 179.97438 * 17 16 15 23 23 C 1.50700 * 120.00104 * 0.07260 * 22 17 16 24 24 H 4.40643 * 5.51417 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47406 * 320.36061 * 3 2 1 26 26 H 1.09008 * 109.46950 * 200.36086 * 3 2 1 27 27 H 0.96999 * 120.00232 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47112 * 60.00729 * 16 15 13 29 29 H 1.08996 * 109.47559 * 299.99730 * 16 15 13 30 30 H 1.07997 * 120.00109 * 0.28032 * 18 17 16 31 31 H 1.08000 * 119.99928 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.99720 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.00171 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47061 * 269.88871 * 23 22 17 35 35 H 1.09011 * 109.47019 * 29.88440 * 23 22 17 36 36 H 1.09001 * 109.47482 * 149.88281 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2303 -1.3618 5 6 3.4784 -1.4968 -1.7615 6 1 3.2595 -1.8238 -2.7673 7 6 4.1082 -2.3585 -0.8728 8 7 4.0580 -3.6574 -1.0693 9 14 5.0264 -1.6718 0.6019 10 1 4.1368 -1.6891 1.7908 11 1 6.2265 -2.5046 0.8695 12 1 5.4459 -0.2759 0.3178 13 6 3.2458 0.8014 -2.2218 14 8 3.6504 0.6097 -3.3513 15 8 2.9086 2.0447 -1.8292 16 6 3.0546 3.1073 -2.8079 17 6 2.6324 4.4172 -2.1939 18 6 2.1929 4.4566 -0.8835 19 6 1.8063 5.6581 -0.3202 20 6 1.8584 6.8203 -1.0673 21 6 2.2977 6.7809 -2.3771 22 6 2.6855 5.5792 -2.9402 23 6 3.1640 5.5361 -4.3686 24 1 -1.0500 0.0002 -0.0001 25 1 3.0097 -0.7905 0.6556 26 1 3.0088 0.9644 0.3576 27 1 4.4975 -4.2593 -0.4485 28 1 2.4271 2.8931 -3.6731 29 1 4.0964 3.1717 -3.1217 30 1 2.1566 3.5495 -0.2987 31 1 1.4626 5.6889 0.7032 32 1 1.5558 7.7591 -0.6272 33 1 2.3380 7.6887 -2.9608 34 1 4.2430 5.6880 -4.3950 35 1 2.9228 4.5661 -4.8035 36 1 2.6721 6.3230 -4.9405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331554983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = 14.780461 kcal Electronic energy + Delta-G solvation = -20442.698395 eV Core-core repulsion = 17280.343939 eV Total energy + Delta-G solvation = -3162.354456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91229 -39.13847 -36.52336 -35.01136 -33.10011 -32.62783 -31.77152 -31.41417 -27.40774 -26.79603 -26.26842 -24.78856 -22.08599 -20.76829 -20.15563 -18.59233 -17.38655 -16.78854 -16.51063 -15.96548 -15.81735 -15.35186 -14.97543 -14.53389 -14.19744 -13.64271 -13.42496 -13.19227 -13.05330 -12.95082 -12.52117 -12.36672 -12.21964 -11.99629 -11.94120 -11.03420 -10.99042 -10.83098 -10.81650 -10.29500 -10.16504 -9.77763 -9.60608 -9.38716 -9.08323 -8.76815 -8.56816 -8.03264 -6.46860 -4.09224 1.30572 1.40208 2.92240 2.98642 3.16473 3.22045 3.42030 3.46898 3.73561 3.84065 4.08222 4.69992 4.79276 4.80082 4.91110 5.07271 5.09110 5.16694 5.22943 5.49607 5.53110 5.60259 5.66925 5.70836 5.83063 5.84719 6.00782 6.04561 6.14899 6.41981 6.43796 6.51489 6.59876 6.97263 7.01022 7.46657 8.14587 8.19461 8.36154 8.81626 9.17091 9.68068 10.64229 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.005117 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.893849 B = 5470.127955 C = 5874.893982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.171 4.171 3 C 0.203 3.797 4 N -0.445 5.445 5 C -0.308 4.308 6 H 0.110 0.890 7 C 0.065 3.935 8 N -0.857 5.857 9 Si 0.866 3.134 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.610 3.390 14 O -0.582 6.582 15 O -0.379 6.379 16 C 0.130 3.870 17 C -0.085 4.085 18 C -0.092 4.092 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.080 4.080 23 C -0.121 4.121 24 H 0.213 0.787 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.277 0.723 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 17.958 2.327 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C 0.080 3.920 4 N -0.173 5.173 5 C -0.434 4.434 6 H 0.127 0.873 7 C -0.142 4.142 8 N -0.493 5.493 9 Si 0.692 3.308 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.183 1.183 13 C 0.365 3.635 14 O -0.473 6.473 15 O -0.294 6.294 16 C 0.055 3.945 17 C -0.085 4.085 18 C -0.110 4.110 19 C -0.145 4.145 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.081 4.081 23 C -0.178 4.178 24 H 0.230 0.770 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.777 17.742 1.994 18.249 hybrid contribution 0.279 0.151 0.778 0.840 sum -3.498 17.893 2.772 18.441 Atomic orbital electron populations 1.24678 0.95622 1.02813 1.00560 1.23687 0.94829 0.98756 0.99970 1.18833 0.84138 1.02093 0.86933 1.42512 1.59900 1.05119 1.09790 1.18941 1.38989 0.83285 1.02191 0.87263 1.25306 0.95802 0.94896 0.98211 1.69735 1.40245 1.01683 1.37606 0.87109 0.80591 0.80694 0.82394 1.19736 1.20717 1.18328 1.18440 0.79768 0.79593 0.85696 1.90849 1.53044 1.83960 1.19444 1.86151 1.82830 1.16598 1.43844 1.21381 1.01554 0.81823 0.89755 1.19622 1.00616 0.93322 0.94975 1.21105 0.96859 0.98425 0.94648 1.21162 1.00741 0.92641 0.99956 1.21112 1.00189 0.98193 0.94483 1.20915 1.00685 0.96911 0.95552 1.19599 0.99759 0.92375 0.96318 1.20869 1.01532 1.03205 0.92160 0.77045 0.88594 0.89148 0.91265 0.90376 0.90290 0.84857 0.86099 0.86298 0.86092 0.90844 0.91065 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.86 19.25 29.55 0.57 -3.29 16 2 C -0.17 -3.50 13.62 -37.12 -0.51 -4.00 16 3 C 0.20 4.37 4.43 -6.83 -0.03 4.34 16 4 N -0.44 -11.24 2.16 -123.37 -0.27 -11.50 16 5 C -0.31 -8.77 9.37 -14.91 -0.14 -8.91 16 6 H 0.11 3.46 7.91 -52.49 -0.42 3.05 16 7 C 0.06 1.77 5.28 -17.47 -0.09 1.68 16 8 N -0.86 -24.44 13.96 55.49 0.77 -23.67 16 9 Si 0.87 19.95 25.00 -169.99 -4.25 15.70 16 10 H -0.27 -5.78 6.69 56.52 0.38 -5.40 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.61 15.05 8.29 54.06 0.45 15.50 16 14 O -0.58 -15.90 16.00 -19.27 -0.31 -16.21 16 15 O -0.38 -7.74 7.62 -40.40 -0.31 -8.05 16 16 C 0.13 2.20 4.58 36.01 0.16 2.37 16 17 C -0.09 -1.25 5.88 -104.62 -0.62 -1.86 16 18 C -0.09 -1.32 9.38 -39.58 -0.37 -1.69 16 19 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 22 C -0.08 -0.99 5.88 -104.63 -0.62 -1.61 16 23 C -0.12 -1.23 9.60 36.01 0.35 -0.89 16 24 H 0.21 2.78 7.80 -54.09 -0.42 2.36 16 25 H 0.10 2.11 3.53 -51.93 -0.18 1.93 16 26 H 0.09 1.70 7.57 -51.92 -0.39 1.31 16 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 29 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 30 H 0.13 2.00 6.99 -52.49 -0.37 1.64 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.77 6.64 -51.92 -0.34 0.42 16 36 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -32.04 315.77 -5.83 -37.87 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.21 Total: 4.79 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.02 Total: -3.69 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.51 Total: -35.17 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.62 Total: -24.26 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.25 Total: 15.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.04 -5.83 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331554983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.647 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds