Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47129 * 80.36549 * 3 2 1 5 5 C 1.37196 * 119.99650 * 264.11562 * 4 3 2 6 6 H 1.08001 * 119.99660 * 142.59814 * 5 4 3 7 7 C 1.38882 * 120.00225 * 322.59711 * 5 4 3 8 8 N 1.31468 * 120.00205 * 158.14497 * 7 5 4 9 9 Si 1.86803 * 119.99970 * 338.14856 * 7 5 4 10 10 H 1.48499 * 109.46974 * 95.71016 * 9 7 5 11 11 H 1.48505 * 109.47051 * 215.70930 * 9 7 5 12 12 H 1.48498 * 109.47042 * 335.71030 * 9 7 5 13 13 C 1.34778 * 120.00025 * 84.11716 * 4 3 2 14 14 O 1.21501 * 119.99617 * 180.02562 * 13 4 3 15 15 O 1.34668 * 120.00025 * 0.02562 * 13 4 3 16 16 C 1.45197 * 116.99567 * 179.97438 * 15 13 4 17 17 C 1.50710 * 109.46792 * 179.97438 * 16 15 13 18 18 C 1.38263 * 119.99597 * 0.02562 * 17 16 15 19 19 C 1.38217 * 119.99584 * 179.97438 * 18 17 16 20 20 C 1.38260 * 119.99814 * 0.02562 * 19 18 17 21 21 C 1.38213 * 120.00297 * 359.97438 * 20 19 18 22 22 C 1.38204 * 120.00093 * 179.97438 * 17 16 15 23 23 C 1.50700 * 120.00104 * 0.07260 * 22 17 16 24 24 H 4.40643 * 5.51417 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47406 * 320.36061 * 3 2 1 26 26 H 1.09008 * 109.46950 * 200.36086 * 3 2 1 27 27 H 0.96999 * 120.00232 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47112 * 60.00729 * 16 15 13 29 29 H 1.08996 * 109.47559 * 299.99730 * 16 15 13 30 30 H 1.07997 * 120.00109 * 0.28032 * 18 17 16 31 31 H 1.08000 * 119.99928 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.99720 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.00171 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47061 * 269.88871 * 23 22 17 35 35 H 1.09011 * 109.47019 * 29.88440 * 23 22 17 36 36 H 1.09001 * 109.47482 * 149.88281 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2303 -1.3618 5 6 3.4784 -1.4968 -1.7615 6 1 3.2595 -1.8238 -2.7673 7 6 4.1082 -2.3585 -0.8728 8 7 4.0580 -3.6574 -1.0693 9 14 5.0264 -1.6718 0.6019 10 1 4.1368 -1.6891 1.7908 11 1 6.2265 -2.5046 0.8695 12 1 5.4459 -0.2759 0.3178 13 6 3.2458 0.8014 -2.2218 14 8 3.6504 0.6097 -3.3513 15 8 2.9086 2.0447 -1.8292 16 6 3.0546 3.1073 -2.8079 17 6 2.6324 4.4172 -2.1939 18 6 2.1929 4.4566 -0.8835 19 6 1.8063 5.6581 -0.3202 20 6 1.8584 6.8203 -1.0673 21 6 2.2977 6.7809 -2.3771 22 6 2.6855 5.5792 -2.9402 23 6 3.1640 5.5361 -4.3686 24 1 -1.0500 0.0002 -0.0001 25 1 3.0097 -0.7905 0.6556 26 1 3.0088 0.9644 0.3576 27 1 4.4975 -4.2593 -0.4485 28 1 2.4271 2.8931 -3.6731 29 1 4.0964 3.1717 -3.1217 30 1 2.1566 3.5495 -0.2987 31 1 1.4626 5.6889 0.7032 32 1 1.5558 7.7591 -0.6272 33 1 2.3380 7.6887 -2.9608 34 1 4.2430 5.6880 -4.3950 35 1 2.9228 4.5661 -4.8035 36 1 2.6721 6.3230 -4.9405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331554983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = -3.921334 kcal Electronic energy + Delta-G solvation = -20443.509366 eV Core-core repulsion = 17280.343939 eV Total energy + Delta-G solvation = -3163.165426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54751 -40.34336 -38.25036 -36.90201 -34.56745 -34.01839 -33.43637 -32.57994 -28.58446 -28.49075 -27.50210 -26.51853 -23.24508 -21.89408 -21.72264 -20.31393 -19.21641 -18.54139 -18.01540 -17.58587 -17.29311 -16.84668 -15.99611 -15.76106 -15.65720 -15.00391 -14.95975 -14.81786 -14.54786 -14.15306 -14.00422 -13.93690 -13.42152 -13.14527 -12.97376 -12.85591 -12.69011 -12.06526 -11.91237 -11.85310 -11.80086 -11.56899 -11.38742 -11.21667 -10.90911 -10.08910 -9.71494 -9.52216 -8.58644 -6.27998 0.36191 0.47349 1.16378 1.23983 1.29073 1.42006 1.83223 1.90633 1.98995 2.12444 2.80566 2.84192 3.28780 3.54856 3.71185 3.94196 4.02812 4.16954 4.18064 4.22889 4.29368 4.37591 4.45768 4.65117 4.77848 4.84402 4.90826 5.02920 5.09615 5.13284 5.30930 5.42954 5.58197 5.63017 5.70530 5.95372 6.10046 6.34423 6.69291 6.73265 7.06073 7.69885 8.57272 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.005117 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.893849 B = 5470.127955 C = 5874.893982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.235 4.235 3 C 0.202 3.798 4 N -0.452 5.452 5 C -0.330 4.330 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.897 5.897 9 Si 0.933 3.067 10 H -0.236 1.236 11 H -0.274 1.274 12 H -0.257 1.257 13 C 0.609 3.391 14 O -0.621 6.621 15 O -0.367 6.367 16 C 0.129 3.871 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.086 4.086 23 C -0.122 4.122 24 H 0.257 0.743 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.286 0.714 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 21.084 4.437 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.236 4.236 3 C 0.081 3.919 4 N -0.181 5.181 5 C -0.457 4.457 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.534 5.534 9 Si 0.755 3.245 10 H -0.161 1.161 11 H -0.200 1.200 12 H -0.180 1.180 13 C 0.365 3.635 14 O -0.515 6.515 15 O -0.281 6.281 16 C 0.054 3.946 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.148 4.148 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.086 4.086 23 C -0.178 4.178 24 H 0.273 0.727 25 H 0.110 0.890 26 H 0.132 0.868 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.160 0.840 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.671 20.886 4.127 21.796 hybrid contribution 0.415 -0.741 0.041 0.850 sum -4.255 20.145 4.168 21.007 Atomic orbital electron populations 1.25703 0.96501 0.99829 0.97223 1.23746 0.95323 1.01582 1.02941 1.18874 0.85479 1.03051 0.84479 1.42511 1.60134 1.04154 1.11268 1.18520 1.41200 0.85312 1.00658 0.92762 1.26023 0.95613 0.94746 1.01588 1.69826 1.40858 1.03140 1.39548 0.86050 0.79410 0.79822 0.79214 1.16119 1.20014 1.18036 1.18506 0.79269 0.80744 0.85010 1.90803 1.54689 1.84881 1.21105 1.86154 1.82045 1.15424 1.44498 1.21591 1.01509 0.82073 0.89404 1.19528 1.03061 0.92552 0.95777 1.21107 0.98422 0.99108 0.94568 1.21417 1.00165 0.92077 1.01099 1.21546 0.98450 0.99004 0.94242 1.21315 0.99295 0.97212 0.96016 1.19856 0.99524 0.92180 0.97032 1.20918 1.02238 1.03348 0.91312 0.72704 0.89029 0.86821 0.90423 0.90997 0.90680 0.86486 0.84013 0.82948 0.82977 0.90114 0.92475 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 19.25 74.32 1.43 -4.35 16 2 C -0.23 -9.42 13.62 31.12 0.42 -8.99 16 3 C 0.20 8.70 4.43 84.57 0.37 9.08 16 4 N -0.45 -23.61 2.16 -774.61 -1.67 -25.29 16 5 C -0.33 -19.82 9.37 84.01 0.79 -19.04 16 6 H 0.05 3.75 7.91 -2.91 -0.02 3.73 16 7 C 0.02 1.37 5.28 84.90 0.45 1.82 16 8 N -0.90 -52.70 13.96 21.65 0.30 -52.40 16 9 Si 0.93 41.10 25.00 68.60 1.71 42.82 16 10 H -0.24 -9.13 6.69 99.48 0.67 -8.46 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 C 0.61 31.39 8.29 129.79 1.08 32.46 16 14 O -0.62 -35.99 16.00 19.83 0.32 -35.67 16 15 O -0.37 -15.45 7.62 -55.77 -0.43 -15.88 16 16 C 0.13 4.53 4.58 71.24 0.33 4.86 16 17 C -0.11 -3.16 5.88 -19.86 -0.12 -3.28 16 18 C -0.11 -3.17 9.38 22.27 0.21 -2.96 16 19 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 20 C -0.11 -2.00 10.05 22.27 0.22 -1.77 16 21 C -0.12 -2.19 9.70 22.27 0.22 -1.98 16 22 C -0.09 -1.98 5.88 -19.87 -0.12 -2.09 16 23 C -0.12 -2.32 9.60 71.24 0.68 -1.63 16 24 H 0.26 5.64 7.80 -4.42 -0.03 5.61 16 25 H 0.09 3.93 3.53 -2.39 -0.01 3.92 16 26 H 0.11 4.21 7.57 -2.38 -0.02 4.19 16 27 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.07 2.56 7.49 -2.39 -0.02 2.54 16 29 H 0.08 2.64 8.13 -2.39 -0.02 2.62 16 30 H 0.12 3.53 6.99 -2.91 -0.02 3.51 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.24 6.64 -2.38 -0.02 1.22 16 36 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 Total: -1.00 -74.06 315.77 7.47 -66.59 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.04 Total: 20.22 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.19 Total: -0.40 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.37 Total: -77.69 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.11 Total: -51.55 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.71 Total: 42.82 kcal Total: -74.06 7.47 -66.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331554983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.670 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds