Wall clock time and date at job start Mon Mar 30 2020 01:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48502 * 109.46893 * 240.00257 * 3 2 1 5 5 H 1.48499 * 109.47407 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 120.00410 * 3 2 1 7 7 C 1.37874 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99996 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47233 * 60.00797 * 9 7 2 11 11 O 1.42908 * 109.46941 * 180.02562 * 9 7 2 12 12 C 1.34906 * 116.99954 * 210.00166 * 11 9 7 13 13 O 1.21625 * 119.99989 * 0.02562 * 12 11 9 14 14 C 1.46233 * 120.00051 * 179.72666 * 12 11 9 15 15 C 1.34914 * 119.99955 * 186.98474 * 14 12 11 16 16 C 1.47173 * 120.00110 * 11.53667 * 15 14 12 17 17 C 1.40289 * 120.58520 * 46.19359 * 16 15 14 18 18 C 1.38279 * 118.26399 * 180.02562 * 17 16 15 19 19 C 1.38399 * 119.33585 * 0.02562 * 18 17 16 20 20 N 1.31945 * 121.14126 * 0.02562 * 19 18 17 21 21 C 1.31652 * 121.90478 * 359.66005 * 20 19 18 22 22 C 1.53000 * 109.47521 * 300.00145 * 9 7 2 23 23 C 1.52998 * 117.50259 * 248.74903 * 22 9 7 24 24 C 1.52998 * 117.50142 * 180.08617 * 22 9 7 25 25 H 0.97000 * 119.99909 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99703 * 6.98643 * 14 12 11 27 27 H 1.08001 * 119.99664 * 191.53876 * 15 14 12 28 28 H 1.07999 * 120.86848 * 359.97438 * 17 16 15 29 29 H 1.08001 * 120.33492 * 180.02562 * 18 17 16 30 30 H 1.07996 * 119.42807 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.73851 * 180.33784 * 21 20 19 32 32 H 1.09003 * 115.54437 * 34.41743 * 22 9 7 33 33 H 1.08998 * 117.49790 * 359.97438 * 23 22 9 34 34 H 1.08998 * 117.49746 * 145.01939 * 23 22 9 35 35 H 1.08993 * 117.49764 * 214.98616 * 24 22 9 36 36 H 1.09004 * 117.49729 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 2.1796 -3.5853 -0.0005 12 6 1.7864 -4.7273 -0.6016 13 8 0.6847 -4.7977 -1.1120 14 6 2.6872 -5.8784 -0.6451 15 6 2.3534 -6.9694 -1.3651 16 6 1.2211 -6.9136 -2.3036 17 6 1.0788 -5.8331 -3.1870 18 6 -0.0033 -5.8293 -4.0479 19 6 -0.9030 -6.8803 -4.0108 20 7 -0.7456 -7.8839 -3.1687 21 6 0.2704 -7.9383 -2.3332 22 6 0.3718 -2.5805 1.2490 23 6 0.7537 -3.6085 2.3159 24 6 -0.4767 -3.8400 1.4351 25 1 -0.4850 0.8400 0.0004 26 1 3.6198 -5.8551 -0.1009 27 1 2.9170 -7.8838 -1.2526 28 1 1.7953 -5.0251 -3.1941 29 1 -0.1451 -5.0143 -4.7422 30 1 -1.7484 -6.8791 -4.6828 31 1 0.3680 -8.7791 -1.6625 32 1 -0.0499 -1.6347 1.5894 33 1 1.6310 -4.2271 2.1274 34 1 0.5828 -3.3392 3.3582 35 1 -1.4563 -3.7229 1.8982 36 1 -0.4088 -4.6105 0.6670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345531913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:25 Heat of formation + Delta-G solvation = 2.388541 kcal Electronic energy + Delta-G solvation = -20855.264269 eV Core-core repulsion = 17692.372459 eV Total energy + Delta-G solvation = -3162.891810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30602 -39.44022 -36.80046 -34.87304 -34.03050 -32.82968 -31.85980 -30.10207 -27.94164 -24.83958 -23.41914 -23.18244 -22.08396 -21.43716 -19.60420 -18.82859 -17.50349 -16.86839 -16.70998 -16.09218 -15.79417 -15.41210 -14.74474 -14.20155 -14.09322 -13.86886 -13.42722 -13.15519 -12.85029 -12.73213 -12.36950 -11.69584 -11.55660 -11.33696 -11.14886 -10.96807 -10.65040 -10.44781 -10.27628 -10.10361 -9.80029 -9.50406 -9.33154 -9.23778 -9.02287 -8.53301 -8.46005 -8.31608 -6.20926 -4.28605 0.68060 1.47776 1.85517 3.23998 3.28157 3.29903 3.47117 3.69341 4.01536 4.31535 4.52415 4.76891 4.92187 5.00389 5.08809 5.11693 5.19905 5.41759 5.54845 5.70918 5.84917 5.85476 6.05223 6.06585 6.12387 6.20025 6.32211 6.45404 6.49195 6.68355 6.85184 6.86594 7.00931 7.18042 7.54524 7.57516 7.81192 8.09352 8.11282 8.58905 8.85897 9.36393 10.86100 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.005276 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.632203 B = 5305.780965 C = 5593.121730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.246 3.754 10 H 0.050 0.950 11 O -0.340 6.340 12 C 0.473 3.527 13 O -0.503 6.503 14 C -0.169 4.169 15 C -0.034 4.034 16 C -0.116 4.116 17 C -0.005 4.005 18 C -0.176 4.176 19 C 0.102 3.898 20 N -0.495 5.495 21 C 0.111 3.889 22 C -0.116 4.116 23 C -0.194 4.194 24 C -0.209 4.209 25 H 0.267 0.733 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -12.261 -3.868 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.193 3.807 10 H 0.067 0.933 11 O -0.256 6.256 12 C 0.319 3.681 13 O -0.395 6.395 14 C -0.188 4.188 15 C -0.053 4.053 16 C -0.118 4.118 17 C -0.031 4.031 18 C -0.195 4.195 19 C -0.055 4.055 20 N -0.204 5.204 21 C -0.046 4.046 22 C -0.135 4.135 23 C -0.232 4.232 24 C -0.246 4.246 25 H 0.076 0.924 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.407 -12.756 -3.997 13.583 hybrid contribution 0.808 1.782 0.278 1.976 sum 3.215 -10.974 -3.718 12.025 Atomic orbital electron populations 1.69974 1.05914 1.27412 1.48892 1.24900 0.95022 0.99268 0.94591 0.86381 0.79363 0.81786 0.78907 1.19976 1.21039 1.19902 1.20918 0.93835 0.88407 1.52563 0.91300 1.19713 0.86341 0.80793 0.93887 0.93254 1.86207 1.48673 1.21759 1.68944 1.21310 0.86315 0.84393 0.76105 1.90862 1.22388 1.83073 1.43140 1.22594 1.00301 0.92286 1.03647 1.22290 0.93837 0.97179 0.91982 1.19875 0.97515 0.96572 0.97866 1.21566 0.96343 0.94213 0.90948 1.21959 0.96142 1.00208 1.01231 1.22705 0.97668 0.89625 0.95463 1.67542 1.21223 1.26161 1.05433 1.22771 0.89460 0.96774 0.95593 1.23049 0.99281 0.93639 0.97541 1.22792 0.98551 1.05975 0.95835 1.23138 0.94404 1.03609 1.03485 0.92355 0.83852 0.83826 0.85616 0.84953 0.83194 0.83092 0.85462 0.89825 0.90489 0.90700 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 11.59 55.43 0.64 -24.12 16 2 C 0.07 1.75 5.20 -17.82 -0.09 1.66 16 3 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.20 8.89 -34.44 -0.31 -14.51 16 8 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 9 C 0.25 6.37 2.37 -27.88 -0.07 6.30 16 10 H 0.05 1.43 7.11 -51.93 -0.37 1.06 16 11 O -0.34 -7.73 8.29 -41.06 -0.34 -8.07 16 12 C 0.47 9.23 5.95 33.94 0.20 9.44 16 13 O -0.50 -10.75 9.44 -19.36 -0.18 -10.93 16 14 C -0.17 -2.38 10.06 -37.55 -0.38 -2.76 16 15 C -0.03 -0.40 9.82 -37.14 -0.36 -0.76 16 16 C -0.12 -1.64 4.42 -104.91 -0.46 -2.11 16 17 C 0.00 -0.07 6.86 -38.80 -0.27 -0.34 16 18 C -0.18 -2.50 10.09 -39.51 -0.40 -2.89 16 19 C 0.10 1.42 11.17 -17.44 -0.19 1.22 16 20 N -0.50 -7.43 10.34 -12.83 -0.13 -7.57 16 21 C 0.11 1.53 10.96 -17.04 -0.19 1.34 16 22 C -0.12 -2.88 5.27 -90.62 -0.48 -3.36 16 23 C -0.19 -4.12 9.79 -26.69 -0.26 -4.39 16 24 C -0.21 -4.63 9.84 -26.69 -0.26 -4.90 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.13 1.98 7.38 -52.49 -0.39 1.59 16 29 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 3.45 6.46 -51.93 -0.34 3.11 16 33 H 0.08 1.72 6.92 -51.93 -0.36 1.36 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.09 2.14 5.33 -51.93 -0.28 1.86 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -30.94 307.12 -8.16 -39.09 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.23 Total: 7.33 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -3.52 Total: -16.06 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.51 Total: -31.68 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.52 Total: -19.00 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.94 -8.16 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345531913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.483 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds