Wall clock time and date at job start Mon Mar 30 2020 01:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48502 * 109.46893 * 240.00257 * 3 2 1 5 5 H 1.48499 * 109.47407 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 120.00410 * 3 2 1 7 7 C 1.37874 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99996 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47233 * 60.00797 * 9 7 2 11 11 O 1.42908 * 109.46941 * 180.02562 * 9 7 2 12 12 C 1.34906 * 116.99954 * 210.00166 * 11 9 7 13 13 O 1.21625 * 119.99989 * 0.02562 * 12 11 9 14 14 C 1.46233 * 120.00051 * 179.72666 * 12 11 9 15 15 C 1.34914 * 119.99955 * 186.98474 * 14 12 11 16 16 C 1.47173 * 120.00110 * 11.53667 * 15 14 12 17 17 C 1.40289 * 120.58520 * 46.19359 * 16 15 14 18 18 C 1.38279 * 118.26399 * 180.02562 * 17 16 15 19 19 C 1.38399 * 119.33585 * 0.02562 * 18 17 16 20 20 N 1.31945 * 121.14126 * 0.02562 * 19 18 17 21 21 C 1.31652 * 121.90478 * 359.66005 * 20 19 18 22 22 C 1.53000 * 109.47521 * 300.00145 * 9 7 2 23 23 C 1.52998 * 117.50259 * 248.74903 * 22 9 7 24 24 C 1.52998 * 117.50142 * 180.08617 * 22 9 7 25 25 H 0.97000 * 119.99909 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99703 * 6.98643 * 14 12 11 27 27 H 1.08001 * 119.99664 * 191.53876 * 15 14 12 28 28 H 1.07999 * 120.86848 * 359.97438 * 17 16 15 29 29 H 1.08001 * 120.33492 * 180.02562 * 18 17 16 30 30 H 1.07996 * 119.42807 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.73851 * 180.33784 * 21 20 19 32 32 H 1.09003 * 115.54437 * 34.41743 * 22 9 7 33 33 H 1.08998 * 117.49790 * 359.97438 * 23 22 9 34 34 H 1.08998 * 117.49746 * 145.01939 * 23 22 9 35 35 H 1.08993 * 117.49764 * 214.98616 * 24 22 9 36 36 H 1.09004 * 117.49729 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 2.1796 -3.5853 -0.0005 12 6 1.7864 -4.7273 -0.6016 13 8 0.6847 -4.7977 -1.1120 14 6 2.6872 -5.8784 -0.6451 15 6 2.3534 -6.9694 -1.3651 16 6 1.2211 -6.9136 -2.3036 17 6 1.0788 -5.8331 -3.1870 18 6 -0.0033 -5.8293 -4.0479 19 6 -0.9030 -6.8803 -4.0108 20 7 -0.7456 -7.8839 -3.1687 21 6 0.2704 -7.9383 -2.3332 22 6 0.3718 -2.5805 1.2490 23 6 0.7537 -3.6085 2.3159 24 6 -0.4767 -3.8400 1.4351 25 1 -0.4850 0.8400 0.0004 26 1 3.6198 -5.8551 -0.1009 27 1 2.9170 -7.8838 -1.2526 28 1 1.7953 -5.0251 -3.1941 29 1 -0.1451 -5.0143 -4.7422 30 1 -1.7484 -6.8791 -4.6828 31 1 0.3680 -8.7791 -1.6625 32 1 -0.0499 -1.6347 1.5894 33 1 1.6310 -4.2271 2.1274 34 1 0.5828 -3.3392 3.3582 35 1 -1.4563 -3.7229 1.8982 36 1 -0.4088 -4.6105 0.6670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345531913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:25 Heat of formation + Delta-G solvation = -14.774735 kcal Electronic energy + Delta-G solvation = -20856.008524 eV Core-core repulsion = 17692.372459 eV Total energy + Delta-G solvation = -3163.636065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72369 -40.75115 -38.44430 -36.57661 -35.24445 -34.87290 -32.96962 -31.26927 -29.85157 -26.25029 -25.09946 -24.37261 -23.46009 -23.17394 -21.27411 -20.33965 -18.93061 -18.64180 -18.01173 -17.55004 -17.25943 -16.99408 -16.43815 -15.66277 -15.41965 -15.19817 -14.68384 -14.41854 -14.35066 -14.02595 -13.91674 -13.38862 -13.27176 -13.02112 -12.79175 -12.61583 -12.36073 -12.23431 -11.99049 -11.64361 -11.33210 -11.16629 -10.99730 -10.52118 -10.42948 -10.37165 -10.29820 -9.45247 -8.26765 -6.43386 -0.43301 0.35681 0.72676 1.40793 1.44001 1.51976 2.08887 2.15493 2.46993 2.92012 3.01311 3.14873 3.52780 3.76488 3.93833 3.97001 4.05953 4.07870 4.22150 4.25919 4.28967 4.46390 4.68151 4.73951 4.79042 4.88204 4.95181 4.99304 5.11445 5.21883 5.25498 5.27761 5.45520 5.54479 5.56232 5.78241 5.93869 6.15325 6.62698 7.02263 7.06541 7.29372 8.80204 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.005276 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.632203 B = 5305.780965 C = 5593.121730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.257 3.743 10 H 0.003 0.997 11 O -0.352 6.352 12 C 0.464 3.536 13 O -0.530 6.530 14 C -0.193 4.193 15 C 0.006 3.994 16 C -0.132 4.132 17 C -0.026 4.026 18 C -0.189 4.189 19 C 0.097 3.903 20 N -0.514 5.514 21 C 0.108 3.892 22 C -0.147 4.147 23 C -0.165 4.165 24 C -0.200 4.200 25 H 0.268 0.732 26 H 0.175 0.825 27 H 0.201 0.799 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -13.860 -3.121 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.203 3.797 10 H 0.021 0.979 11 O -0.268 6.268 12 C 0.312 3.688 13 O -0.422 6.422 14 C -0.212 4.212 15 C -0.012 4.012 16 C -0.134 4.134 17 C -0.052 4.052 18 C -0.209 4.209 19 C -0.059 4.059 20 N -0.222 5.222 21 C -0.048 4.048 22 C -0.166 4.166 23 C -0.202 4.202 24 C -0.236 4.236 25 H 0.077 0.923 26 H 0.192 0.808 27 H 0.217 0.783 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.193 0.807 31 H 0.201 0.799 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.628 -14.379 -3.254 15.183 hybrid contribution 0.359 2.169 -0.066 2.200 sum 3.986 -12.210 -3.320 13.267 Atomic orbital electron populations 1.70111 1.07458 1.28281 1.49301 1.25779 0.95820 1.02708 0.93753 0.85338 0.78167 0.77250 0.79307 1.19276 1.20458 1.18911 1.21243 0.93903 0.89819 1.53252 0.91573 1.19195 0.86199 0.81736 0.92548 0.97924 1.86178 1.48080 1.22391 1.70148 1.22359 0.87082 0.84449 0.74878 1.90849 1.23930 1.83369 1.44097 1.22660 1.01142 0.90538 1.06849 1.22839 0.91879 0.98004 0.88498 1.20199 0.98778 0.96232 0.98210 1.21650 0.96714 0.94529 0.92323 1.22188 0.96178 1.00936 1.01561 1.23131 0.98129 0.89091 0.95565 1.67607 1.21928 1.26638 1.06075 1.23307 0.88704 0.97357 0.95439 1.22765 1.01333 0.93620 0.98883 1.22864 0.98097 1.03197 0.96068 1.23087 0.95443 1.01580 1.03535 0.92270 0.80805 0.78254 0.87179 0.83957 0.80674 0.79905 0.88273 0.88937 0.88148 0.89440 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 11.59 21.45 0.25 -52.65 16 2 C 0.02 1.07 5.20 84.65 0.44 1.51 16 3 Si 0.98 42.87 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.54 -30.77 8.89 25.60 0.23 -30.54 16 8 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.26 13.90 2.37 29.85 0.07 13.97 16 10 H 0.00 0.19 7.11 -2.39 -0.02 0.17 16 11 O -0.35 -16.34 8.29 -58.21 -0.48 -16.82 16 12 C 0.46 18.25 5.95 69.90 0.42 18.67 16 13 O -0.53 -23.29 9.44 19.43 0.18 -23.10 16 14 C -0.19 -5.03 10.06 23.58 0.24 -4.79 16 15 C 0.01 0.12 9.82 23.85 0.23 0.36 16 16 C -0.13 -3.53 4.42 -20.05 -0.09 -3.61 16 17 C -0.03 -0.81 6.86 22.78 0.16 -0.66 16 18 C -0.19 -5.45 10.09 22.32 0.23 -5.23 16 19 C 0.10 2.63 11.17 84.71 0.95 3.57 16 20 N -0.51 -14.70 10.34 -194.50 -2.01 -16.71 16 21 C 0.11 2.75 10.96 85.10 0.93 3.68 16 22 C -0.15 -7.46 5.27 -10.79 -0.06 -7.52 16 23 C -0.17 -6.84 9.79 30.62 0.30 -6.54 16 24 C -0.20 -8.84 9.84 30.62 0.30 -8.53 16 25 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 27 H 0.20 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.11 3.66 7.38 -2.91 -0.02 3.64 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.10 5.58 6.46 -2.39 -0.02 5.57 16 33 H 0.09 3.66 6.92 -2.39 -0.02 3.64 16 34 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 35 H 0.09 3.59 8.14 -2.39 -0.02 3.58 16 36 H 0.08 3.92 5.33 -2.38 -0.01 3.91 16 Total: -1.00 -70.53 307.12 5.39 -65.14 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 1.09 Total: 24.90 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.34 Total: -25.65 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.76 Total: -69.36 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.30 Total: -39.92 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -70.53 5.39 -65.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345531913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.364 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds