Wall clock time and date at job start Mon Mar 30 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99803 * 2 1 4 4 H 1.48495 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47137 * 300.00394 * 3 2 1 6 6 H 1.48509 * 109.46996 * 59.99925 * 3 2 1 7 7 C 1.37873 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99860 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47023 * 300.00601 * 9 7 2 11 11 O 1.42896 * 109.46988 * 180.02562 * 9 7 2 12 12 C 1.34907 * 116.99700 * 150.00523 * 11 9 7 13 13 O 1.21623 * 120.00132 * 359.97438 * 12 11 9 14 14 C 1.46234 * 119.99710 * 180.27544 * 12 11 9 15 15 C 1.34914 * 119.99789 * 179.72536 * 14 12 11 16 16 C 1.47183 * 119.99934 * 179.97438 * 15 14 12 17 17 C 1.40281 * 120.58560 * 179.97438 * 16 15 14 18 18 C 1.38285 * 118.26368 * 179.97438 * 17 16 15 19 19 C 1.38395 * 119.33285 * 0.02562 * 18 17 16 20 20 N 1.31943 * 121.14701 * 0.02562 * 19 18 17 21 21 C 1.31657 * 121.90294 * 359.68420 * 20 19 18 22 22 C 1.53001 * 109.46611 * 59.99916 * 9 7 2 23 23 C 1.52998 * 117.50325 * 248.74240 * 22 9 7 24 24 C 1.53004 * 117.49753 * 180.08355 * 22 9 7 25 25 H 0.96995 * 119.99978 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00354 * 359.71744 * 14 12 11 27 27 H 1.08001 * 120.00388 * 359.97438 * 15 14 12 28 28 H 1.08000 * 120.87112 * 359.95818 * 17 16 15 29 29 H 1.08002 * 120.33312 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.42701 * 180.02562 * 19 18 17 31 31 H 1.08000 * 119.74233 * 180.31027 * 21 20 19 32 32 H 1.09000 * 115.55114 * 34.42071 * 22 9 7 33 33 H 1.08998 * 117.49569 * 0.02562 * 23 22 9 34 34 H 1.08998 * 117.49701 * 145.02572 * 23 22 9 35 35 H 1.08997 * 117.49984 * 214.98504 * 24 22 9 36 36 H 1.09004 * 117.49457 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1798 -3.5852 -0.0005 12 6 1.7865 -4.7272 0.6004 13 8 0.6848 -4.7977 1.1107 14 6 2.6875 -5.8782 0.6439 15 6 2.2963 -7.0185 1.2498 16 6 3.2029 -8.1772 1.2931 17 6 2.8090 -9.3686 1.9202 18 6 3.6986 -10.4273 1.9323 19 6 4.9367 -10.2794 1.3320 20 7 5.2820 -9.1468 0.7499 21 6 4.4701 -8.1113 0.7060 22 6 0.3710 -2.5798 -1.2495 23 6 -1.1446 -2.5124 -1.0514 24 6 -0.4805 -3.8376 -1.4336 25 1 -0.4850 0.8400 0.0004 26 1 3.6660 -5.8156 0.1910 27 1 1.3180 -7.0811 1.7029 28 1 1.8366 -9.4566 2.3818 29 1 3.4297 -11.3602 2.4055 30 1 5.6325 -11.1054 1.3402 31 1 4.7868 -7.2025 0.2158 32 1 0.7827 -2.1152 -2.1455 33 1 -1.5147 -2.4101 -0.0313 34 1 -1.7300 -2.0037 -1.8172 35 1 -0.6294 -4.2001 -2.4506 36 1 -0.4141 -4.6073 -0.6646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345531916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:30 Heat of formation + Delta-G solvation = -27.056847 kcal Electronic energy + Delta-G solvation = -19806.423766 eV Core-core repulsion = 16642.255108 eV Total energy + Delta-G solvation = -3164.168658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47909 -40.98660 -38.37742 -36.78425 -35.59800 -34.70227 -33.27056 -31.16489 -29.81086 -26.37767 -25.09650 -24.54325 -23.14216 -23.00719 -21.33005 -20.57845 -19.16594 -18.59688 -17.99431 -17.61447 -17.06919 -16.73396 -16.28190 -16.11324 -15.66651 -14.97574 -14.86275 -14.73754 -14.50635 -14.00750 -13.66518 -13.32819 -13.06688 -12.97686 -12.82208 -12.69794 -12.29787 -12.17612 -11.89758 -11.75207 -11.52065 -11.24265 -10.93953 -10.63575 -10.58426 -10.45409 -10.42529 -9.53661 -8.21152 -6.38095 -0.70571 0.28442 0.78657 1.42506 1.42870 1.56073 2.05606 2.06331 2.44534 2.90029 3.06108 3.21922 3.43603 3.67800 3.83727 3.91435 4.05291 4.10914 4.18784 4.19755 4.31136 4.45114 4.54456 4.67512 4.79903 4.81008 4.90902 5.09619 5.11755 5.25541 5.27493 5.32312 5.39586 5.49338 5.56915 5.70623 5.85966 6.15080 6.65196 6.95567 7.02182 7.32318 8.85373 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028910 B = 0.003684 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.293350 B = 7597.580719 C = 8215.765290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.063 0.937 9 C 0.250 3.750 10 H 0.007 0.993 11 O -0.352 6.352 12 C 0.479 3.521 13 O -0.548 6.548 14 C -0.191 4.191 15 C 0.006 3.994 16 C -0.138 4.138 17 C -0.052 4.052 18 C -0.167 4.167 19 C 0.100 3.900 20 N -0.514 5.514 21 C 0.108 3.892 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.200 4.200 25 H 0.267 0.733 26 H 0.158 0.842 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.185 0.815 31 H 0.165 0.835 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -19.494 2.225 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.081 0.919 9 C 0.196 3.804 10 H 0.024 0.976 11 O -0.268 6.268 12 C 0.328 3.672 13 O -0.442 6.442 14 C -0.209 4.209 15 C -0.013 4.013 16 C -0.141 4.141 17 C -0.077 4.077 18 C -0.186 4.186 19 C -0.056 4.056 20 N -0.223 5.223 21 C -0.049 4.049 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.237 4.237 25 H 0.076 0.924 26 H 0.176 0.824 27 H 0.158 0.842 28 H 0.181 0.819 29 H 0.192 0.808 30 H 0.202 0.798 31 H 0.182 0.818 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.011 -19.284 1.968 20.295 hybrid contribution -0.867 1.318 0.399 1.628 sum 5.143 -17.966 2.368 18.837 Atomic orbital electron populations 1.70167 1.06985 1.27850 1.48034 1.25724 0.95969 1.02310 0.93729 0.85262 0.78795 0.78143 0.77935 1.19101 1.19894 1.20263 1.21236 0.93751 0.89805 1.54595 0.91905 1.19459 0.86543 0.81691 0.92660 0.97565 1.86164 1.48393 1.22396 1.69840 1.21921 0.86129 0.84515 0.74617 1.90754 1.23942 1.84040 1.45503 1.22298 1.00970 0.90767 1.06905 1.22339 0.98165 0.89821 0.90989 1.19952 0.95855 0.95082 1.03168 1.22224 1.00889 0.90900 0.93735 1.22497 0.94378 1.00987 1.00780 1.23552 0.95879 0.94997 0.91176 1.67719 1.35658 1.01124 1.17755 1.23372 0.89333 0.97514 0.94696 1.22454 0.93424 0.99995 0.99455 1.22270 0.94830 0.98241 1.00577 1.23279 1.06435 0.91742 1.02233 0.92411 0.82415 0.84202 0.81938 0.80791 0.79776 0.81756 0.90299 0.91660 0.89324 0.87907 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.71 11.43 21.45 0.25 -50.46 16 2 C 0.02 1.37 5.30 84.65 0.45 1.82 16 3 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.56 -32.03 8.86 25.60 0.23 -31.80 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.25 13.80 2.21 29.85 0.07 13.87 16 10 H 0.01 0.41 6.87 -2.39 -0.02 0.39 16 11 O -0.35 -17.33 9.73 -58.22 -0.57 -17.90 16 12 C 0.48 20.28 7.05 69.90 0.49 20.77 16 13 O -0.55 -25.63 13.28 19.43 0.26 -25.37 16 14 C -0.19 -5.73 9.54 23.58 0.23 -5.51 16 15 C 0.01 0.15 9.48 23.86 0.23 0.37 16 16 C -0.14 -2.77 5.88 -20.05 -0.12 -2.89 16 17 C -0.05 -0.75 9.95 22.78 0.23 -0.53 16 18 C -0.17 -1.86 10.09 22.32 0.23 -1.63 16 19 C 0.10 1.42 11.17 84.71 0.95 2.37 16 20 N -0.51 -10.75 10.34 -194.49 -2.01 -12.76 16 21 C 0.11 2.28 10.59 85.10 0.90 3.18 16 22 C -0.13 -6.80 4.47 -10.79 -0.05 -6.85 16 23 C -0.12 -5.76 9.04 30.62 0.28 -5.48 16 24 C -0.20 -8.66 9.79 30.62 0.30 -8.36 16 25 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.16 3.97 6.10 -2.91 -0.02 3.95 16 27 H 0.14 3.40 7.52 -2.91 -0.02 3.37 16 28 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 30 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.17 3.22 6.19 -2.91 -0.02 3.20 16 32 H 0.08 4.10 8.11 -2.39 -0.02 4.08 16 33 H 0.06 3.37 8.05 -2.39 -0.02 3.35 16 34 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.09 3.90 5.33 -2.38 -0.01 3.88 16 Total: -1.00 -70.02 313.84 5.44 -64.58 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.09 Total: 17.16 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.40 Total: -20.65 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.77 Total: -63.23 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.31 Total: -43.27 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.02 5.44 -64.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345531916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.526 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds