Wall clock time and date at job start Mon Mar 30 2020 01:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 120.00370 * 2 1 4 4 C 1.39673 * 120.00030 * 180.02562 * 3 2 1 5 5 C 1.47796 * 119.99511 * 179.97438 * 4 3 2 6 6 O 1.21463 * 120.00459 * 359.72954 * 5 4 3 7 7 O 1.34718 * 119.99775 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99774 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47366 * 30.00163 * 8 7 5 10 10 C 1.53003 * 109.46950 * 270.00281 * 8 7 5 11 11 C 1.50697 * 109.46840 * 150.00159 * 8 7 5 12 12 H 1.08001 * 120.00237 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00246 * 179.97438 * 11 8 7 14 14 N 1.31524 * 119.99531 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00342 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47292 * 90.00096 * 15 13 11 17 17 H 1.48503 * 109.47024 * 209.99929 * 15 13 11 18 18 H 1.48498 * 109.47120 * 329.99624 * 15 13 11 19 19 C 1.39670 * 120.00108 * 0.25518 * 4 3 2 20 20 C 1.37713 * 120.00309 * 359.49009 * 19 4 3 21 21 C 1.50699 * 120.00524 * 180.25317 * 20 19 4 22 22 C 1.39678 * 119.99738 * 0.50986 * 20 19 4 23 23 C 1.43196 * 120.00125 * 179.72308 * 22 20 19 24 24 N 3.48323 * 80.32091 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47055 * 90.00139 * 1 2 3 26 26 H 1.09007 * 109.46829 * 209.99994 * 1 2 3 27 27 H 1.08997 * 109.47108 * 329.99599 * 1 2 3 28 28 H 1.08000 * 119.99661 * 0.04945 * 3 2 1 29 29 H 1.08991 * 109.47493 * 60.00203 * 10 8 7 30 30 H 1.08999 * 109.46585 * 180.02562 * 10 8 7 31 31 H 1.09003 * 109.46818 * 299.99862 * 10 8 7 32 32 H 0.96999 * 119.99569 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.99886 * 179.72283 * 19 4 3 34 34 H 1.09009 * 109.46824 * 270.26297 * 21 20 19 35 35 H 1.09007 * 109.46806 * 30.25363 * 21 20 19 36 36 H 1.08993 * 109.47910 * 150.25902 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1926 0.0000 4 6 3.5924 1.1925 -0.0005 5 6 4.3313 2.4725 -0.0011 6 8 3.7241 3.5244 -0.0061 7 8 5.6785 2.4725 -0.0011 8 6 6.3377 3.7662 -0.0011 9 1 5.7097 4.4940 0.5127 10 6 6.5691 4.2206 -1.4437 11 6 7.6621 3.6551 0.7093 12 1 7.9767 2.7072 1.1200 13 6 8.4722 4.7637 0.8348 14 7 8.0888 5.9183 0.3350 15 14 10.1141 4.6259 1.7147 16 1 11.1724 4.2714 0.7352 17 1 10.4449 5.9259 2.3520 18 1 10.0304 3.5711 2.7566 19 6 4.2907 -0.0171 -0.0065 20 6 3.6022 -1.2097 -0.0012 21 6 4.3556 -2.5149 -0.0018 22 6 2.2054 -1.2097 -0.0006 23 6 1.4894 -2.4498 -0.0011 24 7 0.9214 -3.4336 -0.0015 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6557 2.1279 0.0008 29 1 5.6113 4.3010 -1.9574 30 1 7.0643 5.1916 -1.4436 31 1 7.1972 3.4928 -1.9575 32 1 8.6585 6.6983 0.4237 33 1 5.3707 -0.0171 -0.0114 34 1 4.5369 -2.8292 -1.0297 35 1 5.3083 -2.3846 0.5117 36 1 3.7668 -3.2747 0.5120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347052917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:41 Heat of formation + Delta-G solvation = -48.803906 kcal Electronic energy + Delta-G solvation = -19893.990523 eV Core-core repulsion = 16728.878843 eV Total energy + Delta-G solvation = -3165.111681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38795 -39.11660 -36.62275 -35.78298 -33.98820 -33.33164 -32.41595 -29.60884 -28.15350 -26.94305 -25.42339 -25.07312 -21.75372 -21.00232 -19.94066 -18.70619 -17.31297 -16.84178 -15.96318 -15.61741 -15.20509 -14.67954 -14.61496 -14.47951 -13.76766 -13.51629 -13.28433 -13.25904 -13.05767 -12.99135 -12.93063 -12.36621 -12.19206 -12.12098 -11.86363 -11.63789 -11.28709 -11.23875 -11.10894 -10.87858 -10.44147 -10.32522 -9.87068 -9.62499 -9.04581 -8.97002 -8.87493 -8.53825 -6.23008 -4.30278 0.23100 1.09181 2.38920 2.42814 3.20895 3.22220 3.26661 3.30036 3.43631 3.64608 3.76881 4.28597 4.36079 4.46739 4.88023 5.02263 5.10283 5.13737 5.20118 5.32297 5.38924 5.41124 5.49335 5.60846 5.77930 5.88790 6.06245 6.14224 6.26010 6.53167 6.58245 6.83849 6.84555 7.05932 7.23414 7.53000 7.66161 7.85249 8.07177 8.50558 8.80108 9.35319 10.84444 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.003978 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.432979 B = 7037.139560 C = 7707.761265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 C -0.071 4.071 4 C -0.070 4.070 5 C 0.492 3.508 6 O -0.510 6.510 7 O -0.348 6.348 8 C 0.216 3.784 9 H 0.048 0.952 10 C -0.156 4.156 11 C -0.522 4.522 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.912 3.088 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.071 4.071 20 C -0.045 4.045 21 C -0.122 4.122 22 C -0.019 4.019 23 C 0.263 3.737 24 N -0.420 5.420 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.017 0.983 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 -11.809 -1.376 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.048 4.048 3 C -0.089 4.089 4 C -0.072 4.072 5 C 0.336 3.664 6 O -0.401 6.401 7 O -0.264 6.264 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.214 4.214 11 C -0.560 4.560 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.739 3.261 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.089 4.089 20 C -0.047 4.047 21 C -0.179 4.179 22 C -0.023 4.023 23 C -0.052 4.052 24 N -0.096 5.096 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.166 0.834 29 H 0.036 0.964 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.505 -12.799 -1.393 16.616 hybrid contribution 1.096 0.639 0.371 1.322 sum -9.408 -12.160 -1.022 15.408 Atomic orbital electron populations 1.20898 0.89979 1.03575 1.03260 1.19762 0.96375 0.90873 0.97801 1.21084 0.92423 0.98264 0.97111 1.19654 0.93354 0.92226 1.01990 1.20965 0.83307 0.88345 0.73799 1.90782 1.69984 1.33361 1.45923 1.86539 1.17459 1.40982 1.81426 1.20710 0.91614 0.76405 0.94877 0.93377 1.22177 0.98649 1.04073 0.96455 1.21009 1.01522 0.96852 1.36629 0.91201 1.24888 0.98754 0.94756 0.95547 1.69899 1.37809 1.00196 1.44721 0.86261 0.82535 0.77642 0.79633 1.20336 1.20968 1.19583 1.21401 1.01624 0.89752 0.96146 1.19863 0.91200 0.96314 0.97371 1.20919 1.00608 0.93017 1.03316 1.15948 0.91607 0.86660 1.08045 1.25549 0.93079 0.92734 0.93799 1.81247 1.08831 1.10822 1.08669 0.90182 0.91504 0.90097 0.83429 0.96419 0.88141 0.94323 0.92333 0.82880 0.90132 0.89874 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.60 36.01 0.35 -0.63 16 2 C -0.05 -0.48 5.91 -104.27 -0.62 -1.09 16 3 C -0.07 -0.88 9.23 -39.24 -0.36 -1.24 16 4 C -0.07 -1.05 5.88 -104.92 -0.62 -1.66 16 5 C 0.49 9.78 7.87 34.64 0.27 10.06 16 6 O -0.51 -11.40 15.59 -19.24 -0.30 -11.70 16 7 O -0.35 -7.78 9.10 -40.54 -0.37 -8.15 16 8 C 0.22 5.57 2.56 -27.88 -0.07 5.50 16 9 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 10 C -0.16 -3.81 9.33 37.16 0.35 -3.46 16 11 C -0.52 -14.11 8.90 -34.44 -0.31 -14.42 16 12 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 13 C 0.06 1.68 5.30 -17.81 -0.09 1.59 16 14 N -0.89 -24.59 11.32 55.43 0.63 -23.97 16 15 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C -0.07 -0.90 9.25 -39.24 -0.36 -1.26 16 20 C -0.04 -0.48 5.91 -104.28 -0.62 -1.10 16 21 C -0.12 -1.04 9.60 36.01 0.35 -0.70 16 22 C -0.02 -0.21 5.73 -106.89 -0.61 -0.82 16 23 C 0.26 2.96 12.22 -22.47 -0.27 2.68 16 24 N -0.42 -5.35 18.54 41.84 0.78 -4.58 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.55 7.08 -51.93 -0.37 0.18 16 27 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.15 1.78 7.64 -52.49 -0.40 1.37 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.15 1.91 7.60 -52.49 -0.40 1.51 16 34 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.63 8.09 -51.92 -0.42 0.21 16 36 H 0.07 0.56 7.07 -51.93 -0.37 0.19 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -29.77 320.17 -6.38 -36.15 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.30 Total: -1.47 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.62 Total: -6.56 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 1.40 Total: -28.54 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.67 Total: -19.84 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.77 -6.38 -36.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.657 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds