Wall clock time and date at job start Mon Mar 30 2020 01:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 120.00370 * 2 1 4 4 C 1.39673 * 120.00030 * 180.02562 * 3 2 1 5 5 C 1.47796 * 119.99511 * 179.97438 * 4 3 2 6 6 O 1.21463 * 120.00459 * 359.72954 * 5 4 3 7 7 O 1.34718 * 119.99775 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99774 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47366 * 30.00163 * 8 7 5 10 10 C 1.53003 * 109.46950 * 270.00281 * 8 7 5 11 11 C 1.50697 * 109.46840 * 150.00159 * 8 7 5 12 12 H 1.08001 * 120.00237 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00246 * 179.97438 * 11 8 7 14 14 N 1.31524 * 119.99531 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00342 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47292 * 90.00096 * 15 13 11 17 17 H 1.48503 * 109.47024 * 209.99929 * 15 13 11 18 18 H 1.48498 * 109.47120 * 329.99624 * 15 13 11 19 19 C 1.39670 * 120.00108 * 0.25518 * 4 3 2 20 20 C 1.37713 * 120.00309 * 359.49009 * 19 4 3 21 21 C 1.50699 * 120.00524 * 180.25317 * 20 19 4 22 22 C 1.39678 * 119.99738 * 0.50986 * 20 19 4 23 23 C 1.43196 * 120.00125 * 179.72308 * 22 20 19 24 24 N 3.48323 * 80.32091 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47055 * 90.00139 * 1 2 3 26 26 H 1.09007 * 109.46829 * 209.99994 * 1 2 3 27 27 H 1.08997 * 109.47108 * 329.99599 * 1 2 3 28 28 H 1.08000 * 119.99661 * 0.04945 * 3 2 1 29 29 H 1.08991 * 109.47493 * 60.00203 * 10 8 7 30 30 H 1.08999 * 109.46585 * 180.02562 * 10 8 7 31 31 H 1.09003 * 109.46818 * 299.99862 * 10 8 7 32 32 H 0.96999 * 119.99569 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.99886 * 179.72283 * 19 4 3 34 34 H 1.09009 * 109.46824 * 270.26297 * 21 20 19 35 35 H 1.09007 * 109.46806 * 30.25363 * 21 20 19 36 36 H 1.08993 * 109.47910 * 150.25902 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1926 0.0000 4 6 3.5924 1.1925 -0.0005 5 6 4.3313 2.4725 -0.0011 6 8 3.7241 3.5244 -0.0061 7 8 5.6785 2.4725 -0.0011 8 6 6.3377 3.7662 -0.0011 9 1 5.7097 4.4940 0.5127 10 6 6.5691 4.2206 -1.4437 11 6 7.6621 3.6551 0.7093 12 1 7.9767 2.7072 1.1200 13 6 8.4722 4.7637 0.8348 14 7 8.0888 5.9183 0.3350 15 14 10.1141 4.6259 1.7147 16 1 11.1724 4.2714 0.7352 17 1 10.4449 5.9259 2.3520 18 1 10.0304 3.5711 2.7566 19 6 4.2907 -0.0171 -0.0065 20 6 3.6022 -1.2097 -0.0012 21 6 4.3556 -2.5149 -0.0018 22 6 2.2054 -1.2097 -0.0006 23 6 1.4894 -2.4498 -0.0011 24 7 0.9214 -3.4336 -0.0015 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6557 2.1279 0.0008 29 1 5.6113 4.3010 -1.9574 30 1 7.0643 5.1916 -1.4436 31 1 7.1972 3.4928 -1.9575 32 1 8.6585 6.6983 0.4237 33 1 5.3707 -0.0171 -0.0114 34 1 4.5369 -2.8292 -1.0297 35 1 5.3083 -2.3846 0.5117 36 1 3.7668 -3.2747 0.5120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347052917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:41 Heat of formation + Delta-G solvation = -63.536430 kcal Electronic energy + Delta-G solvation = -19894.629374 eV Core-core repulsion = 16728.878843 eV Total energy + Delta-G solvation = -3165.750531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64980 -40.50014 -37.77096 -37.39168 -35.34650 -34.78741 -33.52910 -31.56896 -28.91158 -27.81942 -27.43706 -26.39782 -23.39924 -21.91842 -21.55066 -19.78014 -18.93135 -18.52243 -17.51364 -17.01707 -16.77483 -16.37304 -15.65386 -15.43265 -15.07881 -14.50773 -14.31890 -14.21064 -14.14162 -14.09010 -13.94288 -13.84762 -13.69084 -13.22900 -13.03805 -12.88684 -12.83778 -12.77441 -12.56235 -12.38006 -12.17748 -12.13376 -11.58521 -11.49010 -10.98008 -10.57686 -10.06017 -9.76935 -8.26535 -6.43051 -0.82872 0.16793 1.18547 1.45150 1.46953 1.50966 1.57801 1.88908 2.03598 2.42413 2.68315 2.70472 3.04820 3.53396 3.54858 3.75300 4.03649 4.16272 4.36551 4.43600 4.54023 4.60593 4.70766 4.72985 4.75686 4.81303 4.85174 5.07329 5.08980 5.15332 5.21007 5.26481 5.27246 5.50638 5.59532 5.64313 5.91144 6.06391 6.32151 6.61002 6.89755 7.28254 8.81226 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.003978 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.432979 B = 7037.139560 C = 7707.761265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.033 4.033 3 C -0.070 4.070 4 C -0.090 4.090 5 C 0.489 3.511 6 O -0.543 6.543 7 O -0.351 6.351 8 C 0.218 3.782 9 H 0.010 0.990 10 C -0.144 4.144 11 C -0.546 4.546 12 H 0.071 0.929 13 C 0.016 3.984 14 N -0.918 5.918 15 Si 0.982 3.018 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.071 4.071 20 C -0.034 4.034 21 C -0.123 4.123 22 C -0.013 4.013 23 C 0.282 3.718 24 N -0.439 5.439 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.149 0.851 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.270 0.730 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -13.760 -1.198 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.035 4.035 3 C -0.088 4.088 4 C -0.092 4.092 5 C 0.335 3.665 6 O -0.436 6.436 7 O -0.267 6.267 8 C 0.165 3.835 9 H 0.028 0.972 10 C -0.202 4.202 11 C -0.584 4.584 12 H 0.089 0.911 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.805 3.195 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.089 4.089 20 C -0.036 4.036 21 C -0.179 4.179 22 C -0.016 4.016 23 C -0.033 4.033 24 N -0.115 5.115 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.167 0.833 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.564 -14.773 -1.222 18.203 hybrid contribution 0.988 1.185 0.306 1.572 sum -9.577 -13.588 -0.916 16.649 Atomic orbital electron populations 1.20994 0.87906 1.04416 1.04433 1.19938 0.97676 0.89835 0.96089 1.21103 0.91365 0.99212 0.97112 1.19430 0.93977 0.90322 1.05508 1.21827 0.82316 0.89990 0.72321 1.90754 1.70103 1.35110 1.47587 1.86518 1.19197 1.38945 1.82077 1.20402 0.91008 0.77096 0.94992 0.97225 1.22003 0.98937 1.03189 0.96023 1.21301 1.02265 0.97298 1.37520 0.91054 1.25817 1.02387 0.94161 0.95964 1.70022 1.39208 1.00909 1.45407 0.85186 0.77843 0.77798 0.78625 1.19236 1.20574 1.18808 1.21372 1.01669 0.89579 0.96280 1.20011 0.91252 0.96516 0.95835 1.21005 1.00876 0.91583 1.04428 1.16025 0.91679 0.86622 1.07322 1.25375 0.92476 0.92311 0.93145 1.81285 1.09520 1.11435 1.09287 0.88734 0.91200 0.88756 0.83328 0.95690 0.90052 0.93338 0.92029 0.82914 0.88734 0.88759 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.60 71.24 0.68 -0.95 16 2 C -0.03 -0.62 5.91 -19.64 -0.12 -0.74 16 3 C -0.07 -1.68 9.23 22.49 0.21 -1.47 16 4 C -0.09 -2.68 5.88 -20.06 -0.12 -2.80 16 5 C 0.49 20.04 7.87 70.35 0.55 20.59 16 6 O -0.54 -25.31 15.59 19.96 0.31 -25.00 16 7 O -0.35 -16.15 9.10 -56.28 -0.51 -16.66 16 8 C 0.22 11.64 2.56 29.85 0.08 11.71 16 9 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 10 C -0.14 -7.21 9.33 71.98 0.67 -6.54 16 11 C -0.55 -30.01 8.90 25.60 0.23 -29.78 16 12 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 13 C 0.02 0.88 5.30 84.65 0.45 1.33 16 14 N -0.92 -51.67 11.32 21.45 0.24 -51.43 16 15 Si 0.98 41.69 29.54 68.60 2.03 43.71 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 19 C -0.07 -1.72 9.25 22.49 0.21 -1.51 16 20 C -0.03 -0.65 5.91 -19.64 -0.12 -0.76 16 21 C -0.12 -1.76 9.60 71.24 0.68 -1.07 16 22 C -0.01 -0.25 5.73 -21.34 -0.12 -0.37 16 23 C 0.28 5.59 12.22 88.33 1.08 6.67 16 24 N -0.44 -10.15 18.54 19.00 0.35 -9.80 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.94 7.08 -2.38 -0.02 0.92 16 27 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 28 H 0.15 3.52 7.64 -2.91 -0.02 3.50 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 4.40 6.07 -2.39 -0.01 4.38 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.15 3.70 7.60 -2.91 -0.02 3.68 16 34 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 1.18 8.09 -2.38 -0.02 1.16 16 36 H 0.07 0.98 7.07 -2.39 -0.02 0.97 16 Total: -1.00 -64.92 320.17 7.89 -57.03 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.10 Total: 7.84 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.37 Total: -5.69 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.60 Total: -61.23 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.20 Total: -41.66 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -64.92 7.89 -57.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347052917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.504 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds