Wall clock time and date at job start Mon Mar 30 2020 01:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37952 * 119.84591 * 179.67802 * 4 3 2 6 6 C 1.38365 * 120.14802 * 0.61944 * 5 4 3 7 7 C 1.50696 * 119.84884 * 179.69659 * 6 5 4 8 8 C 1.52998 * 109.47235 * 269.98146 * 7 6 5 9 9 O 1.45206 * 109.47156 * 179.97438 * 8 7 6 10 10 C 1.34222 * 116.99847 * 179.97438 * 9 8 7 11 11 O 1.20828 * 120.00744 * 0.02562 * 10 9 8 12 12 C 1.50708 * 120.00002 * 179.97438 * 10 9 8 13 13 C 1.52991 * 109.47168 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.47168 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99413 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00218 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47005 * 89.99483 * 18 16 14 20 20 H 1.48495 * 109.47011 * 210.00184 * 18 16 14 21 21 H 1.48511 * 109.46687 * 329.99771 * 18 16 14 22 22 C 1.38366 * 120.30592 * 359.68013 * 6 5 4 23 23 C 1.37947 * 120.14940 * 359.97438 * 22 6 5 24 24 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.92876 * 180.29624 * 5 4 3 26 26 H 1.09004 * 109.46695 * 29.98272 * 7 6 5 27 27 H 1.08997 * 109.47414 * 149.97949 * 7 6 5 28 28 H 1.08996 * 109.47541 * 299.99980 * 8 7 6 29 29 H 1.09002 * 109.47189 * 60.00332 * 8 7 6 30 30 H 1.08998 * 109.46924 * 300.00435 * 12 10 9 31 31 H 1.09000 * 109.46534 * 59.99948 * 12 10 9 32 32 H 1.08998 * 109.47400 * 299.99957 * 13 12 10 33 33 H 1.09000 * 109.47588 * 60.00407 * 13 12 10 34 34 H 0.97007 * 119.99952 * 179.97438 * 17 16 14 35 35 H 1.07993 * 119.92703 * 180.02562 * 22 6 5 36 36 H 1.08003 * 120.07687 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1976 1.1841 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3542 1.4246 -0.2361 9 8 8.8062 1.4249 -0.2355 10 6 9.4154 2.6046 -0.4319 11 8 8.7574 3.6042 -0.5984 12 6 10.9205 2.6828 -0.4436 13 6 11.3541 4.1302 -0.6842 14 6 12.8591 4.2085 -0.6953 15 1 13.4473 3.3151 -0.5461 16 6 13.4849 5.4205 -0.8959 17 7 12.7685 6.5082 -1.0781 18 14 15.3503 5.5175 -0.9103 19 1 15.8458 5.3138 -2.2953 20 1 15.7803 6.8522 -0.4219 21 1 15.9076 4.4632 -0.0252 22 6 4.6489 -0.1954 -1.1838 23 6 3.2694 -0.1976 -1.1909 24 1 2.7328 0.3633 2.1140 25 1 5.1923 0.3506 2.1046 26 1 7.2076 -0.3594 0.9625 27 1 7.2078 -0.6511 -0.7934 28 1 6.9909 1.7856 -1.1983 29 1 6.9908 2.0773 0.5576 30 1 11.3094 2.3421 0.5159 31 1 11.3109 2.0490 -1.2398 32 1 10.9651 4.4713 -1.6436 33 1 10.9636 4.7637 0.1122 34 1 13.2088 7.3611 -1.2189 35 1 5.1926 -0.3483 -2.1042 36 1 2.7332 -0.3517 -2.1157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350079084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:00 Heat of formation + Delta-G solvation = -54.897852 kcal Electronic energy + Delta-G solvation = -18663.403587 eV Core-core repulsion = 15498.027653 eV Total energy + Delta-G solvation = -3165.375934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22048 -39.78642 -37.02580 -36.29133 -33.88010 -33.59819 -31.56761 -31.19829 -29.63485 -26.22252 -24.62348 -23.25917 -22.28820 -21.68320 -19.84580 -19.36571 -17.42939 -16.59993 -16.37537 -15.86309 -15.83073 -15.43360 -14.95842 -14.49174 -14.42225 -14.24785 -13.93393 -13.40979 -13.32290 -13.23671 -12.67616 -12.53237 -12.28894 -11.95073 -11.81333 -11.69371 -11.42214 -11.20834 -10.97764 -10.66133 -10.36988 -10.06924 -9.96143 -9.59928 -9.50050 -9.22663 -9.17511 -8.39763 -6.03496 -4.08539 0.27978 0.87121 2.27242 2.48037 2.79126 3.03467 3.30242 3.36649 3.39283 3.44927 3.46532 4.32046 4.38461 4.41373 4.45738 4.76757 4.82464 4.89652 5.03147 5.19927 5.28063 5.31972 5.44035 5.50028 5.59593 5.74651 5.80645 5.82183 6.08887 6.10818 6.16956 6.33612 6.61348 6.89989 7.08038 7.64215 7.70839 7.95800 8.22610 8.38186 8.98646 9.55688 11.07454 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.054469 B = 0.002327 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.931064 B =12028.303609 C =12218.933239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.256 3.744 3 C -0.035 4.035 4 C -0.067 4.067 5 C -0.113 4.113 6 C -0.049 4.049 7 C -0.086 4.086 8 C 0.068 3.932 9 O -0.367 6.367 10 C 0.457 3.543 11 O -0.505 6.505 12 C -0.103 4.103 13 C 0.032 3.968 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.113 4.113 23 C -0.067 4.067 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.137 0.863 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.459 -16.419 2.726 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.059 4.059 3 C -0.039 4.039 4 C -0.088 4.088 5 C -0.131 4.131 6 C -0.050 4.050 7 C -0.123 4.123 8 C -0.006 4.006 9 O -0.286 6.286 10 C 0.301 3.699 11 O -0.391 6.391 12 C -0.141 4.141 13 C -0.005 4.005 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.131 4.131 23 C -0.088 4.088 24 H 0.152 0.848 25 H 0.155 0.845 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.451 -15.920 2.647 23.770 hybrid contribution 1.215 0.281 -0.056 1.249 sum -16.236 -15.639 2.591 22.692 Atomic orbital electron populations 1.81267 1.12116 1.08866 1.07280 1.25746 0.92696 0.93685 0.93818 1.16023 0.84260 1.08052 0.95528 1.21188 0.94242 0.96589 0.96749 1.21089 0.93513 1.00055 0.98472 1.19994 0.95359 0.96274 0.93374 1.20602 0.90013 0.96647 1.05021 1.22834 0.78454 0.96572 1.02732 1.86535 1.21705 1.36705 1.83612 1.24778 0.93174 0.80134 0.71863 1.90645 1.67263 1.36541 1.44662 1.21770 0.83637 1.04624 1.04047 1.19022 0.95888 0.86996 0.98569 1.21154 0.91208 0.94093 1.50244 0.92282 1.25028 0.98463 0.95746 0.95141 1.69994 1.35338 0.98956 1.48478 0.86535 0.85401 0.77410 0.78286 1.20608 1.21197 1.19786 1.21085 0.93515 1.00220 0.98307 1.21187 0.94240 0.96654 0.96690 0.84818 0.84525 0.89218 0.89221 0.91236 0.91245 0.88918 0.88923 0.95600 0.95589 0.92832 0.84528 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.82 18.54 41.83 0.78 -4.05 16 2 C 0.26 2.31 15.33 -22.47 -0.34 1.96 16 3 C -0.04 -0.25 5.73 -106.93 -0.61 -0.86 16 4 C -0.07 -0.41 9.76 -39.17 -0.38 -0.80 16 5 C -0.11 -0.70 9.68 -39.64 -0.38 -1.08 16 6 C -0.05 -0.33 5.14 -104.53 -0.54 -0.87 16 7 C -0.09 -0.65 5.72 -27.89 -0.16 -0.81 16 8 C 0.07 0.79 5.45 37.16 0.20 0.99 16 9 O -0.37 -5.47 10.22 -39.24 -0.40 -5.87 16 10 C 0.46 8.55 7.96 36.01 0.29 8.84 16 11 O -0.50 -11.11 15.73 -18.75 -0.29 -11.41 16 12 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 13 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 14 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.11 -0.70 9.68 -39.64 -0.38 -1.08 16 23 C -0.07 -0.41 9.76 -39.17 -0.38 -0.80 16 24 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 25 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 26 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 31 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -33.28 330.61 -7.21 -40.50 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -4.60 Total: -5.05 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.39 Total: -9.26 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 1.51 Total: -30.01 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.70 Total: -17.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.28 -7.21 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350079084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.401 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds