Wall clock time and date at job start Mon Mar 30 2020 00:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37952 * 119.84591 * 179.67802 * 4 3 2 6 6 C 1.38365 * 120.14802 * 0.61944 * 5 4 3 7 7 C 1.50696 * 119.84884 * 179.69659 * 6 5 4 8 8 C 1.52998 * 109.47235 * 269.98146 * 7 6 5 9 9 O 1.45206 * 109.47156 * 179.97438 * 8 7 6 10 10 C 1.34222 * 116.99847 * 179.97438 * 9 8 7 11 11 O 1.20828 * 120.00744 * 0.02562 * 10 9 8 12 12 C 1.50708 * 120.00002 * 179.97438 * 10 9 8 13 13 C 1.52991 * 109.47168 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.47168 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99413 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00218 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47005 * 89.99483 * 18 16 14 20 20 H 1.48495 * 109.47011 * 210.00184 * 18 16 14 21 21 H 1.48511 * 109.46687 * 329.99771 * 18 16 14 22 22 C 1.38366 * 120.30592 * 359.68013 * 6 5 4 23 23 C 1.37947 * 120.14940 * 359.97438 * 22 6 5 24 24 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.92876 * 180.29624 * 5 4 3 26 26 H 1.09004 * 109.46695 * 29.98272 * 7 6 5 27 27 H 1.08997 * 109.47414 * 149.97949 * 7 6 5 28 28 H 1.08996 * 109.47541 * 299.99980 * 8 7 6 29 29 H 1.09002 * 109.47189 * 60.00332 * 8 7 6 30 30 H 1.08998 * 109.46924 * 300.00435 * 12 10 9 31 31 H 1.09000 * 109.46534 * 59.99948 * 12 10 9 32 32 H 1.08998 * 109.47400 * 299.99957 * 13 12 10 33 33 H 1.09000 * 109.47588 * 60.00407 * 13 12 10 34 34 H 0.97007 * 119.99952 * 179.97438 * 17 16 14 35 35 H 1.07993 * 119.92703 * 180.02562 * 22 6 5 36 36 H 1.08003 * 120.07687 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1976 1.1841 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3542 1.4246 -0.2361 9 8 8.8062 1.4249 -0.2355 10 6 9.4154 2.6046 -0.4319 11 8 8.7574 3.6042 -0.5984 12 6 10.9205 2.6828 -0.4436 13 6 11.3541 4.1302 -0.6842 14 6 12.8591 4.2085 -0.6953 15 1 13.4473 3.3151 -0.5461 16 6 13.4849 5.4205 -0.8959 17 7 12.7685 6.5082 -1.0781 18 14 15.3503 5.5175 -0.9103 19 1 15.8458 5.3138 -2.2953 20 1 15.7803 6.8522 -0.4219 21 1 15.9076 4.4632 -0.0252 22 6 4.6489 -0.1954 -1.1838 23 6 3.2694 -0.1976 -1.1909 24 1 2.7328 0.3633 2.1140 25 1 5.1923 0.3506 2.1046 26 1 7.2076 -0.3594 0.9625 27 1 7.2078 -0.6511 -0.7934 28 1 6.9909 1.7856 -1.1983 29 1 6.9908 2.0773 0.5576 30 1 11.3094 2.3421 0.5159 31 1 11.3109 2.0490 -1.2398 32 1 10.9651 4.4713 -1.6436 33 1 10.9636 4.7637 0.1122 34 1 13.2088 7.3611 -1.2189 35 1 5.1926 -0.3483 -2.1042 36 1 2.7332 -0.3517 -2.1157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350079084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:59 Heat of formation + Delta-G solvation = -72.677753 kcal Electronic energy + Delta-G solvation = -18664.174581 eV Core-core repulsion = 15498.027653 eV Total energy + Delta-G solvation = -3166.146928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.43904 -40.51116 -37.93250 -37.48048 -35.61417 -34.60363 -33.09254 -32.03354 -30.43078 -28.01796 -25.62816 -23.90961 -23.72942 -22.46881 -21.41565 -19.91342 -19.05356 -18.12048 -17.72715 -16.93786 -16.62517 -16.49374 -16.34199 -15.49579 -15.42789 -15.14369 -14.59860 -14.45706 -14.26454 -14.23479 -14.00147 -13.87293 -13.48659 -13.14717 -12.84458 -12.71101 -12.64797 -12.46291 -12.38130 -11.99496 -11.95596 -11.71379 -11.42863 -11.38479 -11.21794 -10.55420 -9.96139 -9.77674 -8.17757 -6.31269 -0.27949 0.41278 1.29973 1.45507 1.47693 1.56698 1.58527 1.69392 1.96544 2.45406 2.83405 2.87445 3.16226 3.74983 3.82666 3.97462 4.03732 4.09225 4.18063 4.38430 4.44005 4.47024 4.51373 4.54294 4.79648 4.85421 4.93645 5.10037 5.10259 5.24959 5.33960 5.45946 5.52090 5.59121 5.59906 5.83734 5.86327 6.16066 6.39447 6.83933 6.91370 7.39071 8.94774 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.054469 B = 0.002327 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.931064 B =12028.303609 C =12218.933239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.279 3.721 3 C -0.047 4.047 4 C -0.066 4.066 5 C -0.116 4.116 6 C -0.055 4.055 7 C -0.074 4.074 8 C 0.061 3.939 9 O -0.354 6.354 10 C 0.466 3.534 11 O -0.547 6.547 12 C -0.095 4.095 13 C 0.037 3.963 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.936 5.936 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.255 1.255 22 C -0.116 4.116 23 C -0.066 4.066 24 H 0.148 0.852 25 H 0.152 0.848 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.117 0.883 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -18.511 3.078 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.035 4.035 3 C -0.051 4.051 4 C -0.087 4.087 5 C -0.134 4.134 6 C -0.056 4.056 7 C -0.111 4.111 8 C -0.013 4.013 9 O -0.271 6.271 10 C 0.312 3.688 11 O -0.437 6.437 12 C -0.132 4.132 13 C -0.001 4.001 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.179 1.179 22 C -0.134 4.134 23 C -0.087 4.087 24 H 0.166 0.834 25 H 0.170 0.830 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.170 0.830 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.113 -18.066 3.007 24.394 hybrid contribution 0.733 0.894 -0.161 1.167 sum -15.381 -17.172 2.847 23.228 Atomic orbital electron populations 1.81285 1.13537 1.10845 1.08896 1.26012 0.92901 0.92215 0.92358 1.16147 0.83181 1.09274 0.96473 1.21370 0.94410 0.95894 0.97009 1.21295 0.93537 0.99532 0.99007 1.20025 0.94911 0.96785 0.93908 1.20545 0.90343 0.93910 1.06253 1.23194 0.76084 0.99440 1.02535 1.86489 1.23904 1.34121 1.82590 1.24453 0.92893 0.80512 0.70986 1.90640 1.68054 1.38210 1.46768 1.21512 0.84813 1.00702 1.06211 1.18807 0.95487 0.90500 0.95267 1.21666 0.92157 0.94840 1.49356 0.90314 1.26106 1.04219 0.95376 0.94652 1.70163 1.37808 0.99723 1.49938 0.85315 0.78480 0.77631 0.78794 1.19784 1.21344 1.17882 1.21293 0.93541 0.99734 0.98806 1.21369 0.94406 0.95959 0.96945 0.83433 0.83007 0.87943 0.87945 0.91641 0.91651 0.86499 0.86483 0.99260 0.99247 0.92822 0.83009 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.84 18.54 19.00 0.35 -10.49 16 2 C 0.28 4.90 15.33 88.33 1.35 6.25 16 3 C -0.05 -0.60 5.73 -21.36 -0.12 -0.73 16 4 C -0.07 -0.70 9.76 22.54 0.22 -0.48 16 5 C -0.12 -1.17 9.68 22.23 0.22 -0.95 16 6 C -0.06 -0.62 5.14 -19.80 -0.10 -0.72 16 7 C -0.07 -0.90 5.72 29.85 0.17 -0.73 16 8 C 0.06 1.30 5.45 71.98 0.39 1.70 16 9 O -0.35 -9.85 10.22 -51.34 -0.52 -10.37 16 10 C 0.47 17.17 7.96 71.24 0.57 17.74 16 11 O -0.55 -24.57 15.73 21.96 0.35 -24.22 16 12 C -0.10 -3.62 5.75 29.85 0.17 -3.45 16 13 C 0.04 1.94 4.26 29.85 0.13 2.06 16 14 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 15 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 16 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 17 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 18 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.12 -1.17 9.68 22.23 0.22 -0.95 16 23 C -0.07 -0.70 9.76 22.54 0.22 -0.48 16 24 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 25 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 26 H 0.10 1.04 8.08 -2.38 -0.02 1.02 16 27 H 0.10 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 29 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 32 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 33 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 34 H 0.26 15.19 8.31 -92.70 -0.77 14.41 16 35 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -73.90 330.61 7.69 -66.21 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.08 Total: 1.22 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 4.12 Total: -10.01 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: 0.64 Total: -67.81 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.18 Total: -34.60 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.90 7.69 -66.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350079084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.469 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds