Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47073 * 0.43573 * 3 2 1 5 5 C 1.36904 * 120.00409 * 274.20124 * 4 3 2 6 6 H 1.07996 * 119.99902 * 138.23902 * 5 4 3 7 7 C 1.39024 * 119.99713 * 318.24372 * 5 4 3 8 8 N 1.31382 * 119.99689 * 161.83716 * 7 5 4 9 9 Si 1.86793 * 120.00307 * 341.83551 * 7 5 4 10 10 H 1.48503 * 109.47157 * 89.09465 * 9 7 5 11 11 H 1.48494 * 109.47250 * 209.09590 * 9 7 5 12 12 H 1.48499 * 109.47006 * 329.09711 * 9 7 5 13 13 C 1.34779 * 120.00018 * 94.20771 * 4 3 2 14 14 O 1.21624 * 119.99938 * 185.53057 * 13 4 3 15 15 C 1.47494 * 120.00133 * 5.52925 * 13 4 3 16 16 C 1.39820 * 120.09768 * 130.16965 * 15 13 4 17 17 C 1.37659 * 119.90479 * 180.24935 * 16 15 13 18 18 C 1.39032 * 120.09702 * 359.52577 * 17 16 15 19 19 O 1.35715 * 119.90662 * 180.27346 * 18 17 16 20 20 C 1.42897 * 117.00041 * 0.02562 * 19 18 17 21 21 C 1.38989 * 120.18810 * 0.24809 * 18 17 16 22 22 C 1.50694 * 119.95585 * 180.02562 * 21 18 17 23 23 C 1.37711 * 120.09422 * 359.97438 * 21 18 17 24 24 H 4.40633 * 5.51409 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.47014 * 240.43697 * 3 2 1 26 26 H 1.08999 * 109.46909 * 120.43524 * 3 2 1 27 27 H 0.96998 * 120.00025 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.04293 * 0.04918 * 16 15 13 29 29 H 1.08005 * 119.95303 * 179.79492 * 17 16 15 30 30 H 1.08994 * 109.47439 * 59.99887 * 20 19 18 31 31 H 1.09003 * 109.47309 * 180.02562 * 20 19 18 32 32 H 1.09005 * 109.46860 * 299.99868 * 20 19 18 33 33 H 1.08997 * 109.47607 * 89.99944 * 22 21 18 34 34 H 1.08998 * 109.47578 * 210.00481 * 22 21 18 35 35 H 1.09005 * 109.47147 * 329.99986 * 22 21 18 36 36 H 1.07996 * 120.04731 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3803 -0.0105 5 6 3.2816 -2.0636 1.1667 6 1 2.9795 -3.0984 1.2316 7 6 3.8192 -1.4253 2.2786 8 7 3.6404 -1.9322 3.4774 9 14 4.7959 0.1530 2.0681 10 1 3.8755 1.3168 2.1306 11 1 5.8036 0.2601 3.1535 12 1 5.4849 0.1370 0.7528 13 6 3.4406 -1.9781 -1.1792 14 8 3.7498 -3.1542 -1.1980 15 6 3.4000 -1.2060 -2.4352 16 6 4.4851 -1.2429 -3.3163 17 6 4.4451 -0.5167 -4.4851 18 6 3.3239 0.2448 -4.7947 19 8 3.2864 0.9548 -5.9507 20 6 4.4325 0.8724 -6.8002 21 6 2.2411 0.2806 -3.9240 22 6 1.0283 1.1073 -4.2652 23 6 2.2746 -0.4392 -2.7505 24 1 -1.0497 -0.0004 0.0002 25 1 3.0091 0.5078 0.8938 26 1 3.0091 0.5214 -0.8861 27 1 4.0152 -1.4867 4.2532 28 1 5.3546 -1.8377 -3.0786 29 1 5.2842 -0.5420 -5.1646 30 1 4.5901 -0.1641 -7.0982 31 1 4.2722 1.4854 -7.6871 32 1 5.3096 1.2335 -6.2630 33 1 0.3212 0.4995 -4.8298 34 1 0.5557 1.4554 -3.3467 35 1 1.3305 1.9652 -4.8659 36 1 1.4330 -0.4105 -2.0743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354968974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = 8.295492 kcal Electronic energy + Delta-G solvation = -20836.344822 eV Core-core repulsion = 17673.709157 eV Total energy + Delta-G solvation = -3162.635665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64590 -40.51054 -38.11325 -37.32116 -34.63958 -33.88224 -33.38732 -31.52178 -28.58353 -28.43502 -27.71303 -26.99526 -23.87970 -22.86369 -20.76476 -20.24818 -19.00545 -18.59968 -18.05258 -17.72472 -17.20979 -16.71885 -16.33906 -15.75936 -15.71334 -15.01183 -14.88241 -14.65545 -14.43077 -14.27245 -14.24171 -13.96606 -13.53014 -13.05274 -12.97822 -12.87215 -12.72366 -12.52200 -12.06565 -12.00448 -11.78182 -11.43006 -11.23070 -10.99265 -10.56933 -9.96162 -9.87490 -9.14766 -8.57350 -6.27714 0.04264 0.26803 1.12256 1.25412 1.37814 1.63792 1.83915 1.87873 2.11651 2.31820 2.59223 2.81257 2.88564 3.53662 3.71839 3.73488 3.85594 4.17282 4.18771 4.22676 4.35576 4.45113 4.45323 4.53382 4.66978 4.79200 4.86439 4.88079 5.06696 5.16212 5.22557 5.33460 5.42970 5.48894 5.66730 5.96197 6.37016 6.43355 6.67839 6.79039 7.12094 7.67731 8.59268 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.006066 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.056313 B = 4614.513241 C = 5002.786117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.234 4.234 3 C 0.186 3.814 4 N -0.464 5.464 5 C -0.337 4.337 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.904 5.904 9 Si 0.935 3.065 10 H -0.234 1.234 11 H -0.275 1.275 12 H -0.255 1.255 13 C 0.511 3.489 14 O -0.606 6.606 15 C -0.170 4.170 16 C -0.052 4.052 17 C -0.199 4.199 18 C 0.141 3.859 19 O -0.317 6.317 20 C 0.013 3.987 21 C -0.125 4.125 22 C -0.099 4.099 23 C -0.070 4.070 24 H 0.259 0.741 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.283 0.717 28 H 0.125 0.875 29 H 0.165 0.835 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 13.698 -18.744 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.235 4.235 3 C 0.065 3.935 4 N -0.184 5.184 5 C -0.465 4.465 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.541 5.541 9 Si 0.757 3.243 10 H -0.160 1.160 11 H -0.201 1.201 12 H -0.179 1.179 13 C 0.302 3.698 14 O -0.490 6.490 15 C -0.174 4.174 16 C -0.071 4.071 17 C -0.217 4.217 18 C 0.095 3.905 19 O -0.230 6.230 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.155 4.155 23 C -0.088 4.088 24 H 0.275 0.725 25 H 0.102 0.898 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.183 0.817 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.517 13.234 -18.596 22.875 hybrid contribution 0.640 -0.444 0.828 1.137 sum -0.877 12.790 -17.768 21.910 Atomic orbital electron populations 1.25738 0.96434 0.97153 0.99231 1.23550 0.95128 1.03037 1.01814 1.19095 0.85805 0.84869 1.03770 1.43610 1.57022 1.12534 1.05212 1.18584 1.43366 0.97105 0.87426 0.93687 1.26147 0.96006 1.02347 0.93770 1.69803 1.42489 1.42815 0.98956 0.86061 0.79585 0.79178 0.79437 1.15963 1.20074 1.17926 1.18991 0.78936 0.87263 0.84612 1.90611 1.52904 1.18111 1.87417 1.19891 0.98483 1.02976 0.96012 1.20984 0.96923 0.96633 0.92579 1.21341 0.99864 1.01431 0.99053 1.19058 0.93506 0.91312 0.86619 1.86011 1.43186 1.64920 1.28879 1.23434 0.86986 1.03710 0.93940 1.19409 0.97248 1.02304 0.93574 1.20637 0.93454 0.98807 1.02653 1.21397 0.96981 0.93816 0.96604 0.72464 0.89828 0.86551 0.90687 0.85657 0.81745 0.91701 0.85738 0.91546 0.90471 0.90756 0.90125 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 19.02 74.32 1.41 -3.82 16 2 C -0.23 -9.04 11.16 31.12 0.35 -8.69 16 3 C 0.19 7.91 4.34 84.57 0.37 8.28 16 4 N -0.46 -24.31 2.08 -649.09 -1.35 -25.66 16 5 C -0.34 -20.70 9.30 84.09 0.78 -19.92 16 6 H 0.05 3.22 7.94 -2.91 -0.02 3.20 16 7 C 0.02 1.19 5.37 84.95 0.46 1.65 16 8 N -0.90 -54.63 13.95 21.68 0.30 -54.32 16 9 Si 0.94 42.20 25.20 68.60 1.73 43.93 16 10 H -0.23 -9.27 6.45 99.48 0.64 -8.63 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.51 26.51 7.16 86.68 0.62 27.13 16 14 O -0.61 -36.73 16.94 -4.11 -0.07 -36.80 16 15 C -0.17 -6.84 4.89 -20.08 -0.10 -6.93 16 16 C -0.05 -1.77 9.72 22.52 0.22 -1.55 16 17 C -0.20 -5.07 9.01 22.32 0.20 -4.87 16 18 C 0.14 3.56 6.67 22.64 0.15 3.71 16 19 O -0.32 -6.36 9.52 -90.37 -0.86 -7.22 16 20 C 0.01 0.15 9.81 113.37 1.11 1.27 16 21 C -0.12 -3.41 5.89 -19.81 -0.12 -3.53 16 22 C -0.10 -2.03 9.78 71.23 0.70 -1.34 16 23 C -0.07 -2.35 7.21 22.52 0.16 -2.19 16 24 H 0.26 5.21 7.80 -4.43 -0.03 5.18 16 25 H 0.08 3.61 3.14 -2.39 -0.01 3.61 16 26 H 0.12 4.29 5.55 -2.39 -0.01 4.27 16 27 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.17 2.95 6.28 -2.91 -0.02 2.93 16 30 H 0.06 0.67 7.65 -2.39 -0.02 0.65 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.67 7.65 -2.38 -0.02 0.65 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.41 8.08 -2.39 -0.02 1.40 16 35 H 0.08 1.47 7.52 -2.38 -0.02 1.45 16 36 H 0.14 4.68 4.66 -2.91 -0.01 4.67 16 Total: -1.00 -79.22 306.62 7.11 -72.12 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.04 Total: 18.76 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 6.31 Total: -10.81 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.04 Total: -79.98 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.93 Total: -44.02 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.73 Total: 43.93 kcal Total: -79.22 7.11 -72.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354968974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.412 kcal (2) G-P(sol) polarization free energy of solvation -79.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds