Wall clock time and date at job start Mon Mar 30 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99905 * 2 1 4 4 C 1.53002 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.39244 * 302.23275 * 4 3 2 6 6 C 1.54289 * 110.34289 * 179.97438 * 4 3 2 7 7 C 1.54389 * 104.96102 * 241.13112 * 6 4 3 8 8 N 1.48146 * 104.71947 * 336.07694 * 7 6 4 9 9 C 1.34781 * 127.83592 * 219.64451 * 8 7 6 10 10 O 1.21280 * 120.00372 * 180.02562 * 9 8 7 11 11 C 1.50707 * 119.99767 * 0.02562 * 9 8 7 12 12 S 1.81000 * 109.46656 * 179.97438 * 11 9 8 13 13 C 1.76207 * 99.99713 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99868 * 0.02562 * 13 12 11 15 15 C 1.38799 * 119.99864 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00320 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99977 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46917 * 119.99861 * 17 15 13 20 20 H 1.48500 * 109.47162 * 239.99851 * 17 15 13 21 21 C 1.48427 * 104.18376 * 39.57151 * 8 7 6 22 22 H 1.08999 * 109.46928 * 59.99718 * 1 2 3 23 23 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47027 * 300.00073 * 1 2 3 25 25 H 1.08996 * 109.47355 * 60.00337 * 3 2 1 26 26 H 1.08998 * 109.47511 * 299.99568 * 3 2 1 27 27 H 1.08998 * 109.46904 * 297.76654 * 5 4 3 28 28 H 1.09003 * 109.46843 * 57.76289 * 5 4 3 29 29 H 1.08994 * 109.47149 * 177.76735 * 5 4 3 30 30 H 1.08997 * 110.34001 * 122.25878 * 6 4 3 31 31 H 1.09003 * 110.34028 * 0.02562 * 6 4 3 32 32 H 1.09002 * 110.40709 * 94.91993 * 7 6 4 33 33 H 1.09002 * 110.40588 * 217.23354 * 7 6 4 34 34 H 1.09000 * 109.47185 * 299.99787 * 11 9 8 35 35 H 1.08994 * 109.47044 * 60.00591 * 11 9 8 36 36 H 0.96995 * 120.00579 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.39413 * 201.64938 * 21 8 7 38 38 H 1.09000 * 110.39150 * 79.23723 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0060 0.3802 1.2141 6 6 4.1844 2.5844 0.0000 7 6 5.0058 2.6423 -1.3059 8 7 5.2837 1.2257 -1.6390 9 6 6.4231 0.7003 -2.1311 10 8 6.4954 -0.4896 -2.3541 11 6 7.6073 1.5914 -2.4042 12 16 8.9733 0.5972 -3.0538 13 6 10.1873 1.8546 -3.2778 14 1 9.9563 2.8791 -3.0262 15 6 11.4404 1.5282 -3.7775 16 7 11.7217 0.2795 -4.0847 17 14 12.7276 2.8610 -4.0143 18 1 12.1660 4.1711 -3.5980 19 1 13.9213 2.5486 -3.1882 20 1 13.1186 2.9229 -5.4456 21 6 4.0217 0.5194 -1.3050 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.7238 0.9028 2.1280 28 1 3.5395 -0.6049 1.2001 29 1 5.0897 0.2696 1.1786 30 1 4.8383 2.6992 0.8644 31 1 3.4165 3.3580 -0.0003 32 1 4.4252 3.1125 -2.0996 33 1 5.9375 3.1847 -1.1451 34 1 7.3299 2.3504 -3.1358 35 1 7.9189 2.0755 -1.4787 36 1 12.5975 0.0514 -4.4336 37 1 4.2117 -0.5417 -1.1430 38 1 3.2874 0.6580 -2.0985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436369568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:52 Heat of formation + Delta-G solvation = -83.609080 kcal Electronic energy + Delta-G solvation = -18975.302113 eV Core-core repulsion = 15944.125118 eV Total energy + Delta-G solvation = -3031.176995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11529 -38.33669 -36.99359 -33.22044 -32.41327 -29.70800 -29.47248 -27.68611 -26.33504 -25.57805 -25.11061 -23.08699 -19.39028 -19.32542 -17.63666 -16.78512 -16.53010 -16.13748 -15.95875 -15.02062 -14.89369 -14.79073 -14.24185 -13.82228 -13.80899 -13.52631 -13.05302 -12.66134 -12.54173 -12.31615 -12.11610 -11.91318 -11.68637 -11.55036 -11.06108 -11.03051 -10.99576 -10.91154 -10.77159 -10.70377 -9.94850 -9.78507 -9.34634 -9.06001 -8.51888 -8.20381 -6.48161 -6.20103 -3.90539 2.93887 3.11436 3.22544 3.27304 3.32236 3.43369 3.65193 4.21453 4.37808 4.39535 4.60235 4.89296 4.93433 5.03538 5.05834 5.08229 5.13624 5.15002 5.23465 5.37486 5.40113 5.46177 5.54105 5.65279 5.74716 5.78242 5.87008 5.93806 5.95153 6.01408 6.15911 6.23228 6.42442 6.86601 7.61245 7.79150 8.36959 8.61840 9.25106 10.87401 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.046021 B = 0.003464 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.266464 B = 8081.638695 C = 8385.253250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.077 3.923 4 C -0.074 4.074 5 C -0.133 4.133 6 C -0.125 4.125 7 C 0.101 3.899 8 N -0.631 5.631 9 C 0.554 3.446 10 O -0.516 6.516 11 C -0.146 4.146 12 S -0.061 6.061 13 C -0.534 4.534 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.122 3.878 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.086 0.914 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.283 6.316 9.832 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.000 4.000 4 C -0.075 4.075 5 C -0.190 4.190 6 C -0.163 4.163 7 C -0.023 4.023 8 N -0.368 5.368 9 C 0.343 3.657 10 O -0.389 6.389 11 C -0.297 4.297 12 S 0.166 5.834 13 C -0.682 4.682 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.001 4.001 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.802 4.192 9.371 23.197 hybrid contribution 0.438 2.586 0.102 2.624 sum -20.365 6.778 9.473 23.461 Atomic orbital electron populations 1.22732 0.81176 1.02800 0.99786 1.87920 1.19433 1.27699 1.95342 1.22607 0.92407 0.84824 1.00187 1.21525 0.92852 0.96158 0.96983 1.21776 1.01493 1.00229 0.95492 1.22623 0.99411 0.95635 0.98644 1.22337 1.00253 0.83724 0.95980 1.49085 1.12753 1.08982 1.66022 1.19975 0.81677 0.88444 0.75642 1.90711 1.81740 1.15842 1.50654 1.23501 0.98539 1.02924 1.04695 1.85423 1.03733 1.11785 1.82499 1.22898 0.99719 0.95382 1.50203 0.90905 1.24999 0.97711 0.96194 0.94733 1.70029 1.22201 1.16956 1.41084 0.86111 0.80490 0.80842 0.78012 1.19628 1.20569 1.20577 1.22296 0.85150 0.98318 0.94365 0.94136 0.89615 0.94247 0.92993 0.93005 0.92759 0.91552 0.92189 0.90123 0.90309 0.91208 0.89841 0.89345 0.89343 0.92241 0.89571 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.81 9.75 -35.23 -0.34 -4.15 16 3 C 0.08 0.64 4.53 37.16 0.17 0.81 16 4 C -0.07 -0.74 0.84 -153.10 -0.13 -0.87 16 5 C -0.13 -1.40 8.10 37.16 0.30 -1.10 16 6 C -0.12 -1.06 6.30 -25.33 -0.16 -1.22 16 7 C 0.10 1.09 6.91 -2.41 -0.02 1.07 16 8 N -0.63 -9.60 3.33 -169.06 -0.56 -10.17 16 9 C 0.55 11.17 7.94 -10.98 -0.09 11.08 16 10 O -0.52 -12.50 16.15 5.56 0.09 -12.41 16 11 C -0.15 -3.08 5.13 36.01 0.18 -2.89 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 14 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 17 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.12 1.61 5.95 -2.25 -0.01 1.60 16 22 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.75 7.62 -51.93 -0.40 0.35 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.68 7.71 -51.93 -0.40 0.28 16 31 H 0.08 0.49 7.71 -51.93 -0.40 0.08 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.89 7.30 -51.93 -0.38 0.51 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.72 7.95 -51.92 -0.41 1.31 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 1.33 7.61 -51.93 -0.40 0.94 16 38 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -34.85 328.69 -6.94 -41.79 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -6.14 Total: -3.69 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 1.56 Total: -3.27 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.17 Total: -35.84 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.25 Total: -16.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.85 -6.94 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436369568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.815 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds