Wall clock time and date at job start Mon Mar 30 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99905 * 2 1 4 4 C 1.53002 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.39244 * 302.23275 * 4 3 2 6 6 C 1.54289 * 110.34289 * 179.97438 * 4 3 2 7 7 C 1.54389 * 104.96102 * 241.13112 * 6 4 3 8 8 N 1.48146 * 104.71947 * 336.07694 * 7 6 4 9 9 C 1.34781 * 127.83592 * 219.64451 * 8 7 6 10 10 O 1.21280 * 120.00372 * 180.02562 * 9 8 7 11 11 C 1.50707 * 119.99767 * 0.02562 * 9 8 7 12 12 S 1.81000 * 109.46656 * 179.97438 * 11 9 8 13 13 C 1.76207 * 99.99713 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99868 * 0.02562 * 13 12 11 15 15 C 1.38799 * 119.99864 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00320 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99977 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46917 * 119.99861 * 17 15 13 20 20 H 1.48500 * 109.47162 * 239.99851 * 17 15 13 21 21 C 1.48427 * 104.18376 * 39.57151 * 8 7 6 22 22 H 1.08999 * 109.46928 * 59.99718 * 1 2 3 23 23 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47027 * 300.00073 * 1 2 3 25 25 H 1.08996 * 109.47355 * 60.00337 * 3 2 1 26 26 H 1.08998 * 109.47511 * 299.99568 * 3 2 1 27 27 H 1.08998 * 109.46904 * 297.76654 * 5 4 3 28 28 H 1.09003 * 109.46843 * 57.76289 * 5 4 3 29 29 H 1.08994 * 109.47149 * 177.76735 * 5 4 3 30 30 H 1.08997 * 110.34001 * 122.25878 * 6 4 3 31 31 H 1.09003 * 110.34028 * 0.02562 * 6 4 3 32 32 H 1.09002 * 110.40709 * 94.91993 * 7 6 4 33 33 H 1.09002 * 110.40588 * 217.23354 * 7 6 4 34 34 H 1.09000 * 109.47185 * 299.99787 * 11 9 8 35 35 H 1.08994 * 109.47044 * 60.00591 * 11 9 8 36 36 H 0.96995 * 120.00579 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.39413 * 201.64938 * 21 8 7 38 38 H 1.09000 * 110.39150 * 79.23723 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0060 0.3802 1.2141 6 6 4.1844 2.5844 0.0000 7 6 5.0058 2.6423 -1.3059 8 7 5.2837 1.2257 -1.6390 9 6 6.4231 0.7003 -2.1311 10 8 6.4954 -0.4896 -2.3541 11 6 7.6073 1.5914 -2.4042 12 16 8.9733 0.5972 -3.0538 13 6 10.1873 1.8546 -3.2778 14 1 9.9563 2.8791 -3.0262 15 6 11.4404 1.5282 -3.7775 16 7 11.7217 0.2795 -4.0847 17 14 12.7276 2.8610 -4.0143 18 1 12.1660 4.1711 -3.5980 19 1 13.9213 2.5486 -3.1882 20 1 13.1186 2.9229 -5.4456 21 6 4.0217 0.5194 -1.3050 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.7238 0.9028 2.1280 28 1 3.5395 -0.6049 1.2001 29 1 5.0897 0.2696 1.1786 30 1 4.8383 2.6992 0.8644 31 1 3.4165 3.3580 -0.0003 32 1 4.4252 3.1125 -2.0996 33 1 5.9375 3.1847 -1.1451 34 1 7.3299 2.3504 -3.1358 35 1 7.9189 2.0755 -1.4787 36 1 12.5975 0.0514 -4.4336 37 1 4.2117 -0.5417 -1.1430 38 1 3.2874 0.6580 -2.0985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436369568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:52 Heat of formation + Delta-G solvation = -107.818667 kcal Electronic energy + Delta-G solvation = -18976.351920 eV Core-core repulsion = 15944.125118 eV Total energy + Delta-G solvation = -3032.226802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22893 -39.47142 -37.96007 -34.59692 -34.33409 -31.05527 -30.60475 -28.32559 -27.77981 -27.13985 -26.11736 -23.99239 -20.79754 -20.26761 -19.51241 -18.07542 -17.51496 -16.92857 -16.89006 -16.77764 -16.46141 -16.01988 -15.70104 -15.06568 -14.80806 -14.68974 -14.36058 -13.94931 -13.66909 -13.47277 -13.17632 -13.13450 -12.91955 -12.81754 -12.64443 -12.60040 -12.24771 -11.85937 -11.71677 -11.70372 -11.47614 -11.16489 -10.97259 -10.52990 -10.28880 -9.77964 -8.69603 -8.35243 -6.14519 1.22649 1.41829 1.44437 1.55153 1.57087 2.06719 2.26485 2.82986 2.98902 3.24821 3.52476 3.59822 3.77544 3.94570 4.20086 4.21567 4.25345 4.35833 4.42733 4.47911 4.56546 4.62127 4.67084 4.68755 4.74620 4.86026 4.90741 4.92224 5.02196 5.05412 5.20466 5.32141 5.41144 5.43548 6.19440 6.31196 6.44754 7.05616 7.10139 8.74463 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.046021 B = 0.003464 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.266464 B = 8081.638695 C = 8385.253250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.078 3.922 4 C -0.068 4.068 5 C -0.130 4.130 6 C -0.114 4.114 7 C 0.090 3.910 8 N -0.625 5.625 9 C 0.550 3.450 10 O -0.572 6.572 11 C -0.117 4.117 12 S -0.155 6.155 13 C -0.544 4.544 14 H 0.084 0.916 15 C 0.012 3.988 16 N -0.912 5.912 17 Si 1.002 2.998 18 H -0.255 1.255 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.118 3.882 22 H 0.049 0.951 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.271 0.729 37 H 0.052 0.948 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.784 9.802 10.832 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C 0.002 3.998 4 C -0.069 4.069 5 C -0.187 4.187 6 C -0.152 4.152 7 C -0.032 4.032 8 N -0.359 5.359 9 C 0.338 3.662 10 O -0.451 6.451 11 C -0.268 4.268 12 S 0.073 5.927 13 C -0.691 4.691 14 H 0.102 0.898 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.824 3.176 18 H -0.179 1.179 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.005 4.005 22 H 0.068 0.932 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.365 7.726 10.401 25.847 hybrid contribution 0.734 1.487 -0.157 1.666 sum -21.631 9.214 10.244 25.646 Atomic orbital electron populations 1.22874 0.79678 1.03414 1.00926 1.87890 1.21184 1.28864 1.95607 1.22662 0.90546 0.84622 1.02018 1.21507 0.94596 0.96543 0.94245 1.21741 0.99695 1.00173 0.97114 1.22633 0.99940 0.95395 0.97241 1.22772 1.01457 0.80808 0.98157 1.49047 1.11710 1.11554 1.63634 1.19786 0.82819 0.87543 0.76038 1.90685 1.82924 1.17912 1.53550 1.23282 0.96177 1.01918 1.05442 1.85648 1.07717 1.15685 1.83689 1.23215 1.00045 0.95503 1.50366 0.89805 1.26177 1.00252 0.98882 0.93985 1.70197 1.23029 1.19583 1.42069 0.84860 0.76925 0.77740 0.78121 1.17856 1.19905 1.19911 1.22478 0.84287 0.96854 0.96867 0.93218 0.89459 0.92780 0.90641 0.91509 0.90405 0.92964 0.94652 0.89732 0.86484 0.88726 0.89385 0.87416 0.87470 0.91967 0.92900 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.47 9.75 -148.98 -1.45 -8.93 16 3 C 0.08 1.03 4.53 71.98 0.33 1.36 16 4 C -0.07 -1.20 0.84 -51.27 -0.04 -1.24 16 5 C -0.13 -2.62 8.10 71.98 0.58 -2.03 16 6 C -0.11 -1.48 6.30 31.50 0.20 -1.29 16 7 C 0.09 1.65 6.91 86.53 0.60 2.25 16 8 N -0.62 -18.49 3.33 -807.18 -2.69 -21.18 16 9 C 0.55 22.58 7.94 87.66 0.70 23.27 16 10 O -0.57 -29.24 16.15 -3.03 -0.05 -29.29 16 11 C -0.12 -4.93 5.13 71.24 0.37 -4.56 16 12 S -0.15 -8.89 20.57 -56.49 -1.16 -10.05 16 13 C -0.54 -31.49 9.50 67.95 0.65 -30.85 16 14 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 15 C 0.01 0.67 5.49 84.86 0.47 1.13 16 16 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 17 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.12 3.05 5.95 86.48 0.51 3.56 16 22 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.19 7.62 -2.39 -0.02 1.17 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.10 7.71 -2.39 -0.02 1.08 16 31 H 0.12 0.73 7.71 -2.39 -0.02 0.71 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.58 7.30 -2.39 -0.02 1.56 16 34 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 35 H 0.11 4.07 7.95 -2.40 -0.02 4.05 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.05 1.72 7.61 -2.38 -0.02 1.71 16 38 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 Total: -1.00 -80.05 328.69 3.59 -76.47 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.02 Total: 10.45 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.60 Total: -6.84 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.40 Total: -77.73 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.50 Total: -38.21 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -80.05 3.59 -76.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436369568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.353 kcal (2) G-P(sol) polarization free energy of solvation -80.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds