Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.53007 * 110.30474 * 57.82603 * 4 3 2 6 6 C 1.54285 * 110.34752 * 180.02562 * 4 3 2 7 7 C 1.54390 * 104.96231 * 118.87096 * 6 4 3 8 8 N 1.48142 * 104.61475 * 23.86591 * 7 6 4 9 9 C 1.34782 * 127.83223 * 140.41602 * 8 7 6 10 10 O 1.21282 * 119.99815 * 180.02562 * 9 8 7 11 11 C 1.50696 * 120.00325 * 0.02562 * 9 8 7 12 12 S 1.80995 * 109.47619 * 180.02562 * 11 9 8 13 13 C 1.76191 * 100.00322 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00530 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00290 * 179.97438 * 13 12 11 16 16 N 1.31631 * 120.00516 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99821 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47100 * 89.99635 * 17 15 13 19 19 H 1.48505 * 109.47188 * 209.99920 * 17 15 13 20 20 H 1.48506 * 109.47008 * 329.99666 * 17 15 13 21 21 C 1.48139 * 104.32965 * 320.41517 * 8 7 6 22 22 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.08996 * 109.47087 * 60.70259 * 5 4 3 28 28 H 1.09004 * 109.46922 * 180.70276 * 5 4 3 29 29 H 1.08999 * 109.47205 * 300.70089 * 5 4 3 30 30 H 1.09002 * 110.34506 * 237.74491 * 6 4 3 31 31 H 1.09000 * 110.33583 * 359.89346 * 6 4 3 32 32 H 1.08995 * 110.40413 * 142.65694 * 7 6 4 33 33 H 1.09003 * 110.40127 * 265.08512 * 7 6 4 34 34 H 1.09001 * 109.47266 * 300.00410 * 11 9 8 35 35 H 1.08997 * 109.47111 * 59.99678 * 11 9 8 36 36 H 0.97000 * 120.00243 * 180.02562 * 16 15 13 37 37 H 1.08993 * 110.40911 * 280.80332 * 21 8 7 38 38 H 1.09005 * 110.40913 * 158.36877 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0039 0.3812 -1.2156 6 6 4.1845 2.5843 0.0000 7 6 5.0060 2.6422 1.3059 8 7 5.2812 1.2248 1.6375 9 6 6.4194 0.6970 2.1300 10 8 6.4898 -0.4935 2.3508 11 6 7.6044 1.5859 2.4064 12 16 8.9683 0.5889 3.0558 13 6 10.1840 1.8439 3.2823 14 1 9.9547 2.8693 3.0326 15 6 11.4362 1.5150 3.7826 16 7 12.3447 2.4524 3.9514 17 14 11.8328 -0.2585 4.2152 18 1 12.4023 -0.9425 3.0265 19 1 12.8201 -0.2887 5.3241 20 1 10.5910 -0.9542 4.6390 21 6 4.0218 0.5193 1.3050 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.6973 0.8913 -2.1287 28 1 5.0902 0.2929 -1.1959 29 1 3.5581 -0.6131 -1.1876 30 1 4.8384 2.6992 -0.8645 31 1 3.4166 3.3579 -0.0011 32 1 5.9385 3.1829 1.1445 33 1 4.4254 3.1124 2.0996 34 1 7.9177 2.0716 1.4823 35 1 7.3270 2.3438 3.1391 36 1 13.2199 2.2225 4.3007 37 1 3.2875 0.6579 2.0984 38 1 4.2118 -0.5418 1.1429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436369622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -83.556321 kcal Electronic energy + Delta-G solvation = -19021.579311 eV Core-core repulsion = 15990.404603 eV Total energy + Delta-G solvation = -3031.174707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20405 -38.41868 -37.06698 -33.30209 -32.42602 -29.77244 -29.62375 -27.71865 -26.38267 -25.65907 -25.23496 -23.14988 -19.44806 -19.43414 -17.64381 -16.83768 -16.63947 -16.17897 -16.01137 -15.15976 -14.99379 -14.84129 -14.29290 -13.89036 -13.80366 -13.54325 -13.11924 -12.80928 -12.63113 -12.43344 -12.20162 -11.97577 -11.77481 -11.59899 -11.25925 -11.06058 -10.99584 -10.96212 -10.79681 -10.56447 -9.98054 -9.84058 -9.47351 -8.99059 -8.60958 -8.47731 -6.90426 -6.27789 -3.99343 2.71054 2.98568 3.21978 3.34802 3.40439 3.52509 3.62423 4.31063 4.34776 4.35336 4.54833 4.73778 4.86981 4.89821 5.02567 5.02841 5.06868 5.11368 5.17654 5.22840 5.34680 5.36295 5.42705 5.56231 5.69290 5.71236 5.79960 5.86275 5.87898 5.96155 6.02922 6.18128 6.34614 6.83258 7.68321 7.95309 8.42537 8.48498 9.18533 10.81432 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044175 B = 0.003647 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.696639 B = 7675.770336 C = 7999.673223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.076 3.924 4 C -0.074 4.074 5 C -0.132 4.132 6 C -0.125 4.125 7 C 0.100 3.900 8 N -0.629 5.629 9 C 0.552 3.448 10 O -0.518 6.518 11 C -0.117 4.117 12 S -0.142 6.142 13 C -0.520 4.520 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.881 5.881 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.122 3.878 22 H 0.085 0.915 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.068 0.932 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.258 1.265 -9.613 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.001 4.001 4 C -0.075 4.075 5 C -0.190 4.190 6 C -0.163 4.163 7 C -0.024 4.024 8 N -0.366 5.366 9 C 0.341 3.659 10 O -0.392 6.392 11 C -0.268 4.268 12 S 0.084 5.916 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.518 5.518 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.001 4.001 22 H 0.104 0.896 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.730 -0.673 -9.166 24.517 hybrid contribution 0.057 1.197 -0.044 1.200 sum -22.673 0.524 -9.210 24.478 Atomic orbital electron populations 1.22734 0.81144 1.02803 0.99816 1.87917 1.19461 1.27699 1.95351 1.22613 0.92366 0.84835 1.00242 1.21528 0.92911 0.96170 0.96913 1.21776 1.01409 1.00253 0.95528 1.22624 0.99457 0.95636 0.98619 1.22378 1.00426 0.83458 0.96108 1.48971 1.12710 1.09155 1.65778 1.19932 0.81810 0.88384 0.75769 1.90709 1.81827 1.15761 1.50921 1.23248 0.96578 1.01993 1.04956 1.84800 1.08012 1.15178 1.83582 1.22308 0.98771 0.95375 1.50335 0.89406 1.24710 0.94901 0.97945 0.93743 1.69937 1.05200 1.32948 1.43683 0.86737 0.80818 0.84942 0.79382 1.19189 1.19945 1.15883 1.22255 0.85076 0.98293 0.94468 0.89618 0.94121 0.94218 0.92946 0.92984 0.92698 0.92237 0.91581 0.90063 0.90220 0.89672 0.91024 0.88616 0.88575 0.91945 0.91422 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.67 9.78 -35.23 -0.34 -4.01 16 3 C 0.08 0.61 4.52 37.16 0.17 0.78 16 4 C -0.07 -0.70 0.84 -153.10 -0.13 -0.83 16 5 C -0.13 -1.34 8.08 37.16 0.30 -1.04 16 6 C -0.13 -1.02 6.30 -25.33 -0.16 -1.18 16 7 C 0.10 1.03 6.92 -2.41 -0.02 1.01 16 8 N -0.63 -9.10 3.32 -169.31 -0.56 -9.67 16 9 C 0.55 10.58 7.93 -10.99 -0.09 10.49 16 10 O -0.52 -11.90 16.13 5.56 0.09 -11.81 16 11 C -0.12 -2.36 5.14 36.00 0.18 -2.18 16 12 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 13 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 14 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 15 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.76 13.97 55.49 0.78 -25.98 16 17 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 21 C 0.12 1.54 5.94 -2.41 -0.01 1.52 16 22 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 30 H 0.08 0.66 7.71 -51.93 -0.40 0.26 16 31 H 0.08 0.47 7.71 -51.93 -0.40 0.07 16 32 H 0.08 0.87 7.30 -51.93 -0.38 0.49 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.80 7.95 -51.91 -0.41 1.38 16 35 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 38 H 0.09 1.27 7.60 -51.93 -0.39 0.88 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -34.39 326.00 -6.43 -40.82 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -6.17 Total: -3.68 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 1.57 Total: -2.21 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.21 Total: -35.65 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.25 Total: -15.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.39 -6.43 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436369622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.736 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds