Wall clock time and date at job start Mon Mar 30 2020 01:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47106 * 120.00343 * 2 1 4 4 C 1.32875 * 120.00343 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00549 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47551 * 124.99738 * 5 4 3 7 7 O 1.21285 * 119.99680 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.39928 * 120.00389 * 174.78743 * 8 6 5 10 10 C 1.38964 * 120.03212 * 326.15967 * 9 8 6 11 11 C 1.38155 * 120.06362 * 179.76114 * 10 9 8 12 12 C 1.38168 * 120.13935 * 0.50882 * 11 10 9 13 13 C 1.38917 * 120.07128 * 359.74633 * 12 11 10 14 14 O 1.35751 * 120.03529 * 179.97438 * 13 12 11 15 15 C 1.34822 * 116.99963 * 185.92303 * 14 13 12 16 16 H 1.07998 * 120.00491 * 5.40982 * 15 14 13 17 17 C 1.38653 * 120.00164 * 185.40724 * 15 14 13 18 18 N 1.31568 * 119.99884 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00473 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46696 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47100 * 119.99476 * 19 17 15 22 22 H 1.48497 * 109.47283 * 240.00217 * 19 17 15 23 23 C 1.38712 * 120.03645 * 146.42628 * 9 8 6 24 24 H 1.07998 * 120.00274 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99324 * 359.72912 * 1 2 3 26 26 H 1.08009 * 119.99417 * 180.02562 * 2 1 3 27 27 H 1.07998 * 120.00004 * 359.97438 * 3 2 1 28 28 H 1.08008 * 119.99604 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.46918 * 244.99965 * 5 4 3 30 30 H 1.09007 * 109.46743 * 4.99473 * 5 4 3 31 31 H 0.97006 * 120.00398 * 354.79515 * 8 6 5 32 32 H 1.08001 * 119.96889 * 359.97438 * 10 9 8 33 33 H 1.07997 * 119.93393 * 180.23211 * 11 10 9 34 34 H 1.08000 * 119.96709 * 179.72186 * 12 11 10 35 35 H 0.96996 * 119.99926 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.06933 * 359.96616 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2739 0.0000 4 6 3.3931 1.2739 0.0005 5 6 4.1467 2.5789 0.0011 6 6 5.1031 2.6063 1.1653 7 8 5.1663 1.6594 1.9206 8 7 5.8884 3.6828 1.3673 9 6 6.6964 3.7556 2.5073 10 6 6.2614 3.2003 3.7047 11 6 7.0608 3.2674 4.8295 12 6 8.2900 3.8956 4.7705 13 6 8.7282 4.4573 3.5779 14 8 9.9358 5.0748 3.5209 15 6 10.2476 5.7045 2.3703 16 1 9.5161 5.7771 1.5790 17 6 11.5073 6.2589 2.2027 18 7 12.3983 6.1709 3.1668 19 14 11.9397 7.1307 0.6082 20 1 10.7721 7.0931 -0.3087 21 1 12.2961 8.5431 0.8972 22 1 13.0940 6.4496 -0.0312 23 6 7.9299 4.3869 2.4450 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9354 0.0044 26 1 1.8687 -0.9354 -0.0004 27 1 1.5244 2.2093 -0.0004 28 1 3.9331 0.3385 0.0014 29 1 4.7049 2.6766 -0.9301 30 1 3.4417 3.4055 0.0905 31 1 5.8933 4.4074 0.7223 32 1 5.2990 2.7128 3.7551 33 1 6.7223 2.8319 5.7579 34 1 8.9107 3.9504 5.6526 35 1 13.2794 6.5591 3.0497 36 1 8.2685 4.8225 1.5165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001441552388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:32 Heat of formation + Delta-G solvation = -4.227003 kcal Electronic energy + Delta-G solvation = -19297.663729 eV Core-core repulsion = 16134.485047 eV Total energy + Delta-G solvation = -3163.178681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21706 -38.69216 -36.62242 -35.85269 -34.23300 -32.61206 -32.23026 -29.57061 -28.78016 -27.36806 -25.30894 -22.64287 -21.83075 -20.92819 -19.91657 -19.83882 -17.99058 -17.72888 -16.79660 -15.85561 -15.66956 -15.11433 -14.93504 -14.56452 -14.18285 -14.09007 -13.70120 -13.57682 -13.00748 -12.92685 -12.43216 -12.34810 -11.93676 -11.73948 -11.54726 -11.30400 -11.22037 -11.13170 -10.95911 -10.81229 -10.46021 -9.91492 -9.64672 -9.42322 -8.82859 -8.55903 -7.74913 -7.17102 -6.46607 -4.06335 1.12565 1.94913 2.35944 2.82379 2.83438 3.10384 3.10795 3.16334 3.34330 3.94048 4.44363 4.55828 4.69422 4.83251 4.99906 5.08445 5.12221 5.26351 5.29921 5.33082 5.57598 5.70517 5.97753 6.05805 6.07226 6.23331 6.26829 6.28849 6.42895 6.62038 6.66450 6.95645 6.97780 7.10816 7.29794 7.40584 7.67759 7.79910 7.97563 8.29647 8.98786 9.69437 10.71543 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.003343 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.625002 B = 8373.405223 C = 9264.478660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.512 3.488 7 O -0.517 6.517 8 N -0.671 5.671 9 C 0.180 3.820 10 C -0.206 4.206 11 C -0.063 4.063 12 C -0.200 4.200 13 C 0.168 3.832 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.090 0.910 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.256 4.256 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.407 0.593 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.269 0.731 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.674 -5.386 -7.870 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.140 4.140 3 C -0.159 4.159 4 C -0.130 4.130 5 C -0.153 4.153 6 C 0.299 3.701 7 O -0.391 6.391 8 N -0.316 5.316 9 C 0.087 3.913 10 C -0.227 4.227 11 C -0.082 4.082 12 C -0.220 4.220 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.278 4.278 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.242 0.758 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.244 -5.975 -7.152 19.601 hybrid contribution 0.281 0.811 -1.229 1.498 sum -16.963 -5.165 -8.381 19.613 Atomic orbital electron populations 1.24324 0.95595 1.01879 1.00636 1.21978 0.95420 0.96737 0.99818 1.21881 0.94413 0.96905 1.02679 1.22982 0.94641 0.97732 0.97626 1.20783 0.98251 0.98251 0.98037 1.20602 0.80860 0.82086 0.86580 1.90734 1.66883 1.34573 1.46934 1.43543 1.42523 1.21620 1.23899 1.17415 0.89839 0.98562 0.85511 1.20532 1.01817 1.08670 0.91641 1.20530 0.93264 0.97112 0.97280 1.20257 0.98207 1.06805 0.96754 1.19089 0.86450 0.90536 0.92563 1.84020 1.27652 1.58968 1.37322 1.21309 0.99083 1.33221 0.93175 0.89221 1.25291 0.94565 0.97585 0.99118 1.70049 1.05366 1.42433 1.31817 0.85653 0.78907 0.78843 0.80011 1.19209 1.20141 1.20162 1.20819 0.94738 1.11907 1.00310 0.88204 0.88446 0.86929 0.86900 0.86223 0.87490 0.88162 0.75824 0.86426 0.86612 0.86360 0.92056 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 14.43 28.88 0.42 -0.99 16 2 C -0.12 -1.07 9.83 -37.84 -0.37 -1.44 16 3 C -0.14 -1.30 9.44 -37.84 -0.36 -1.66 16 4 C -0.11 -1.13 8.46 -36.16 -0.31 -1.43 16 5 C -0.11 -1.05 6.15 -29.04 -0.18 -1.22 16 6 C 0.51 7.25 7.56 -10.99 -0.08 7.16 16 7 O -0.52 -9.40 13.75 5.55 0.08 -9.33 16 8 N -0.67 -9.81 5.34 -9.88 -0.05 -9.87 16 9 C 0.18 3.43 6.27 -83.72 -0.52 2.91 16 10 C -0.21 -3.98 8.65 -39.34 -0.34 -4.32 16 11 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 12 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 13 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 14 O -0.18 -5.00 9.76 0.07 0.00 -5.00 16 15 C -0.39 -10.78 9.44 30.89 0.29 -10.49 16 16 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 17 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.11 13.67 55.48 0.76 -24.36 16 19 Si 0.94 20.17 29.55 -169.99 -5.02 15.14 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.26 -5.53 9.04 -39.21 -0.35 -5.88 16 24 H 0.10 0.62 8.06 -52.49 -0.42 0.19 16 25 H 0.10 0.65 8.05 -52.49 -0.42 0.23 16 26 H 0.11 0.93 8.06 -52.48 -0.42 0.51 16 27 H 0.11 0.89 7.87 -52.49 -0.41 0.48 16 28 H 0.12 1.30 8.05 -52.48 -0.42 0.87 16 29 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.71 7.82 -51.92 -0.41 0.30 16 31 H 0.41 4.52 8.82 -40.82 -0.36 4.16 16 32 H 0.12 2.23 6.45 -52.49 -0.34 1.89 16 33 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -33.15 321.58 -6.54 -39.69 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.19 Total: 7.80 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -2.95 Total: -18.93 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.71 Total: -34.22 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.15 -6.54 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441552388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.464 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds