Wall clock time and date at job start Mon Mar 30 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48501 * 109.47016 * 269.99535 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99989 * 3 2 1 6 6 H 1.48508 * 109.47117 * 150.00090 * 3 2 1 7 7 C 1.37884 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47402 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47293 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54189 * 68.37430 * 12 11 10 14 14 O 1.42099 * 110.54203 * 291.62169 * 12 11 10 15 15 N 1.65608 * 104.44917 * 179.97438 * 12 11 10 16 16 C 1.47069 * 136.05426 * 89.99784 * 15 12 11 17 17 C 1.53495 * 87.98211 * 207.08836 * 16 15 12 18 18 C 1.47061 * 136.05749 * 269.63087 * 15 12 11 19 19 H 1.08998 * 113.46753 * 267.69117 * 18 15 12 20 20 C 1.52997 * 113.47000 * 38.13598 * 18 15 12 21 21 C 1.53004 * 117.50023 * 248.62092 * 20 18 15 22 22 C 1.52995 * 59.99872 * 252.50959 * 21 20 18 23 23 H 0.97004 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47291 * 60.00239 * 9 7 2 25 25 H 1.09001 * 109.47238 * 300.00056 * 9 7 2 26 26 H 1.09001 * 109.47713 * 59.99658 * 10 9 7 27 27 H 1.09001 * 109.46817 * 299.99882 * 10 9 7 28 28 H 1.09001 * 109.47069 * 59.99138 * 11 10 9 29 29 H 1.09001 * 109.46935 * 299.99683 * 11 10 9 30 30 H 1.09000 * 113.46809 * 321.86681 * 16 15 12 31 31 H 1.09001 * 113.46340 * 92.31137 * 16 15 12 32 32 H 1.08993 * 114.20720 * 87.52341 * 17 16 15 33 33 H 1.09001 * 114.20142 * 220.34855 * 17 16 15 34 34 H 1.09000 * 115.54934 * 34.32619 * 20 18 15 35 35 H 1.09003 * 117.49419 * 0.02562 * 21 20 18 36 36 H 1.09000 * 117.50086 * 145.01169 * 21 20 18 37 37 H 1.09003 * 117.49710 * 252.50715 * 22 21 20 38 38 H 1.08993 * 117.50082 * 107.49008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3549 -6.4263 1.2395 14 8 3.3566 -6.4262 -1.2346 15 7 1.7086 -7.7221 0.0019 16 6 1.1013 -8.5895 -1.0188 17 6 0.0073 -8.9327 0.0017 18 6 1.1059 -8.5928 1.0223 19 1 1.7299 -9.4459 1.2885 20 6 0.5900 -7.8317 2.2452 21 6 1.3307 -8.0353 3.5684 22 6 -0.0559 -8.6493 3.3655 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6040 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 0.8545 -5.0449 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 0.7298 -8.0443 -1.8865 31 1 1.7242 -9.4417 -1.2905 32 1 -0.8363 -8.2425 0.0017 33 1 -0.2908 -9.9811 0.0016 34 1 0.1806 -6.8416 2.0444 35 1 2.1858 -8.7113 3.5675 36 1 1.4089 -7.1791 4.2383 37 1 -0.8900 -8.1971 3.9020 38 1 -0.1133 -9.7295 3.2314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475317814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:07 Heat of formation + Delta-G solvation = -24.961615 kcal Electronic energy + Delta-G solvation = -19372.271530 eV Core-core repulsion = 16343.637680 eV Total energy + Delta-G solvation = -3028.633850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89834 -36.86788 -36.38446 -35.67586 -34.66102 -32.18216 -28.74690 -27.78331 -26.64873 -23.73437 -22.47164 -21.64905 -21.17258 -20.25569 -18.76203 -17.58518 -16.62214 -16.22316 -15.96187 -15.34527 -15.09655 -14.50093 -14.47497 -13.87831 -13.70349 -13.42639 -12.59324 -12.36175 -12.27442 -12.18968 -11.90724 -11.77630 -11.74315 -11.63787 -11.24862 -11.13887 -11.05076 -10.92141 -10.83600 -10.48713 -10.39147 -10.03096 -9.95038 -9.49127 -9.23725 -8.96389 -8.40973 -6.05947 -4.08980 0.44364 2.71513 3.30399 3.36377 3.40672 3.63242 4.05400 4.08856 4.40234 4.42410 4.44465 4.59760 4.82391 4.88914 4.95267 5.04716 5.13739 5.22386 5.30442 5.34560 5.45043 5.51853 5.56596 5.83135 5.86209 5.91106 5.94838 6.02759 6.05128 6.29000 6.41553 6.46519 6.87263 7.56538 7.66512 7.92054 8.32669 8.97167 9.55710 11.05316 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.004343 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.174991 B = 6445.890557 C = 6824.387006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.604 4.604 12 S 2.618 3.382 13 O -0.953 6.953 14 O -0.962 6.962 15 N -1.043 6.043 16 C 0.126 3.874 17 C -0.148 4.148 18 C 0.191 3.809 19 H 0.091 0.909 20 C -0.180 4.180 21 C -0.166 4.166 22 C -0.166 4.166 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -20.741 2.478 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.736 4.736 12 S 2.717 3.283 13 O -0.943 6.943 14 O -0.953 6.953 15 N -0.881 5.881 16 C 0.000 4.000 17 C -0.187 4.187 18 C 0.085 3.915 19 H 0.109 0.891 20 C -0.199 4.199 21 C -0.203 4.203 22 C -0.204 4.204 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.467 -20.448 2.461 20.647 hybrid contribution -0.207 1.320 -0.036 1.337 sum -1.674 -19.127 2.425 19.353 Atomic orbital electron populations 1.69960 1.06101 1.26772 1.50632 1.25018 0.94882 0.99362 0.95077 0.86553 0.79888 0.83150 0.78207 1.20548 1.21153 1.19730 1.21256 0.93260 0.90885 1.51044 0.92371 1.19054 0.93506 0.90425 0.97698 1.21510 0.99421 0.91707 1.01903 1.30590 1.16359 1.15629 1.11011 1.04828 0.74941 0.74423 0.74060 1.93558 1.69824 1.85698 1.45250 1.93552 1.69935 1.85940 1.45865 1.60389 1.70720 1.40438 1.16519 1.22355 0.92426 0.93016 0.92205 1.23634 0.96991 1.02512 0.95606 1.21643 0.91822 0.90636 0.87411 0.89111 1.22609 1.05877 1.01237 0.90149 1.22971 0.95107 1.03471 0.98784 1.22870 0.96944 0.99356 1.01182 0.92900 0.96135 0.96149 0.91594 0.91658 0.85575 0.85610 0.90331 0.90042 0.88427 0.89824 0.87269 0.88503 0.88368 0.88467 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.81 4.97 -27.89 -0.14 0.67 16 10 C -0.11 -2.23 5.16 -26.73 -0.14 -2.36 16 11 C -0.60 -9.90 6.18 37.16 0.23 -9.67 16 12 S 2.62 42.34 5.85 -107.50 -0.63 41.71 16 13 O -0.95 -17.72 18.07 -57.54 -1.04 -18.76 16 14 O -0.96 -18.37 18.07 -57.54 -1.04 -19.41 16 15 N -1.04 -12.78 3.93 -117.74 -0.46 -13.25 16 16 C 0.13 1.13 8.68 -8.50 -0.07 1.06 16 17 C -0.15 -1.06 8.04 -26.08 -0.21 -1.27 16 18 C 0.19 1.87 4.15 -72.26 -0.30 1.57 16 19 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 20 C -0.18 -1.86 5.62 -90.62 -0.51 -2.37 16 21 C -0.17 -1.73 10.24 -26.73 -0.27 -2.00 16 22 C -0.17 -1.35 10.25 -26.73 -0.27 -1.62 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.13 1.86 8.14 -51.92 -0.42 1.44 16 29 H 0.13 1.87 7.53 -51.92 -0.39 1.48 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.11 1.20 7.53 -51.93 -0.39 0.81 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -34.98 332.99 -10.78 -45.76 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.24 Total: -2.00 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -2.10 Total: -29.76 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.27 Total: -39.27 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -2.08 Total: -38.17 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 42.34 SS G_CDS: -0.63 Total: 41.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.98 -10.78 -45.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475317814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.794 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds